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Microbial ecosystems

Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling

Mohsen Davoudkhani, Francesco Rubino, Christopher J. Creevey, Seppo Ahvenjärvi, Ali R. Bayat, Ilma Tapio, Alejandro Belanche, Rafael Muñoz-Tamayo

published 20 Mar 2024

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Soil bacterial assemblage responses to wildfire in low elevation southern California habitats

Elena Cox, André R. O. Cavalcanti, Edward J. Crane III, Wallace M. Meyer III

published 08 Apr 2022

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Clinical utility of subgingival plaque-specific bacteria in salivary microbiota for detecting periodontitis

Jiale Ma, Shinya Kageyama, Toru Takeshita, Yukie Shibata, Michiko Furuta, Mikari Asakawa, Yoshihisa Yamashita

published 25 Jun 2021

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Perturbation of the human gastrointestinal tract microbial ecosystem by oral drugs to treat chronic disease results in a spectrum of individual specific patterns of extinction and persistence of dominant microbial strains

Hyunmin Koo, Casey D. Morrow

published 01 Dec 2020

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Environmental control on the distribution of metabolic strategies of benthic microbial mats in Lake Fryxell, Antarctica

Megan L. Dillon, Ian Hawes, Anne D. Jungblut, Tyler J. Mackey, Jonathan A. Eisen, Peter T. Doran, Dawn Y. Sumner

published 13 Apr 2020

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The Community Simulator: A Python package for microbial ecology

Robert Marsland, Wenping Cui, Joshua Goldford, Pankaj Mehta

published 24 Mar 2020

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Effects of initial microbial biomass abundance on respiration during pine litter decomposition

Michaeline B. N. Albright, Andreas Runde, Deanna Lopez, Jason Gans, Sanna Sevanto, Dominic Woolf, John Dunbar

published 14 Feb 2020

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Enzyme stoichiometry indicates the variation of microbial nutrient requirements at different soil depths in subtropical forests

Jiebao Liu, Ji Chen, Guangshui Chen, Jianfen Guo, Yiqing Li

published 04 Feb 2020

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Geomicrobiology of a seawater-influenced active sulfuric acid cave

Ilenia M. D’Angeli, Daniele Ghezzi, Stefan Leuko, Andrea Firrincieli, Mario Parise, Adriano Fiorucci, Bartolomeo Vigna, Rosangela Addesso, Daniela Baldantoni, Cristina Carbone, Ana Zelia Miller, Valme Jurado, Cesareo Saiz-Jimenez, Jo De Waele, Martina Cappelletti

published 08 Aug 2019

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Canine endometrial and vaginal microbiomes reveal distinct and complex ecosystems

C. C. Lyman, G. R. Holyoak, K. Meinkoth, X. Wieneke, K. A. Chillemi, U. DeSilva

published 07 Jan 2019

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Gut microbiota signatures in cystic fibrosis: Loss of host CFTR function drives the microbiota enterophenotype

Pamela Vernocchi, Federica Del Chierico, Alessandra Russo, Fabio Majo, Martina Rossitto, Mariacristina Valerio, Luca Casadei, Antonietta La Storia, Francesca De Filippis, Cristiano Rizzo, Cesare Manetti, Paola Paci, Danilo Ercolini, Federico Marini, Ersilia Vita Fiscarelli, Bruno Dallapiccola, Vincenzina Lucidi, Alfredo Miccheli, Lorenza Putignani

published 06 Dec 2018

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The evolution of antibiotic production rate in a spatial model of bacterial competition

Jakub Kosakowski, Prateek Verma, Supratim Sengupta, Paul G. Higgs

published 31 Oct 2018

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Milk microbiome diversity and bacterial group prevalence in a comparison between healthy Holstein Friesian and Rendena cows

Paola Cremonesi, Camilla Ceccarani, Giulio Curone, Marco Severgnini, Claudia Pollera, Valerio Bronzo, Federica Riva, Maria Filippa Addis, Joel Filipe, Massimo Amadori, Erminio Trevisi, Daniele Vigo, Paolo Moroni, Bianca Castiglioni

published 24 Oct 2018

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