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Gene fusion

Transcriptome Profiling of the Cancer, Adjacent Non-Tumor and Distant Normal Tissues from a Colorectal Cancer Patient by Deep Sequencing

Yan'an Wu, Xuetao Wang, Fangbo Wu, Ruolei Huang, Fangqin Xue, Guantao Liang, Min Tao, Pengwei Cai, Yi Huang

published 08 Aug 2012

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FusionFinder: A Software Tool to Identify Expressed Gene Fusion Candidates from RNA-Seq Data

Richard W. Francis, Katherine Thompson-Wicking, Kim W. Carter, Denise Anderson, Ursula R. Kees, Alex H. Beesley

published 27 Jun 2012

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Analytical validation of a next generation sequencing liquid biopsy assay for high sensitivity broad molecular profiling

Vincent Plagnol, Samuel Woodhouse, Karen Howarth, Stefanie Lensing, Matt Smith, Michael Epstein, Mikidache Madi, Sarah Smalley, Catherine Leroy, Jonathan Hinton, Frank de Kievit, Esther Musgrave-Brown, Colin Herd, Katherine Baker-Neblett, Will Brennan, Peter Dimitrov, Nathan Campbell, Clive Morris, Nitzan Rosenfeld, James Clark, Davina Gale, Jamie Platt, John Calaway, Greg Jones, Tim Forshew

published 15 Mar 2018

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Integrated Analysis of Whole Genome and Transcriptome Sequencing Reveals Diverse Transcriptomic Aberrations Driven by Somatic Genomic Changes in Liver Cancers

Yuichi Shiraishi, Akihiro Fujimoto, Mayuko Furuta, Hiroko Tanaka, Ken-ichi Chiba, Keith A. Boroevich, Tetsuo Abe, Yoshiiku Kawakami, Masaki Ueno, Kunihito Gotoh, Shun-ichi Ariizumi, Tetsuo Shibuya, Kaoru Nakano, Aya Sasaki, Kazuhiro Maejima, Rina Kitada, Shinya Hayami, Yoshinobu Shigekawa, Shigeru Marubashi, Terumasa Yamada, Michiaki Kubo, Osamu Ishikawa, Hiroshi Aikata, Koji Arihiro, Hideki Ohdan, Masakazu Yamamoto, Hiroki Yamaue, Kazuaki Chayama, Tatsuhiko Tsunoda, Satoru Miyano, Hidewaki Nakagawa

published 19 Dec 2014

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Reanalysis of RNA-Sequencing Data Reveals Several Additional Fusion Genes with Multiple Isoforms

Sara Kangaspeska, Susanne Hultsch, Henrik Edgren, Daniel Nicorici, Astrid Murumägi, Olli Kallioniemi

published 31 Oct 2012

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A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes

Lee T. Sam, Doron Lipson, Tal Raz, Xuhong Cao, John Thompson, Patrice M. Milos, Dan Robinson, Arul M. Chinnaiyan, Chandan Kumar-Sinha, Christopher A. Maher

published 01 Mar 2011

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An Efficient Method for Identifying Gene Fusions by Targeted RNA Sequencing from Fresh Frozen and FFPE Samples

Jonathan A. Scolnick, Michelle Dimon, I-Ching Wang, Stephanie C. Huelga, Douglas A. Amorese

published 01 Jul 2015

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InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data

Konstantin Okonechnikov, Aki Imai-Matsushima, Lukas Paul, Alexander Seitz, Thomas F. Meyer, Fernando Garcia-Alcalde

published 01 Dec 2016

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Fusion FISH Imaging: Single-Molecule Detection of Gene Fusion Transcripts In Situ

Fatu Badiane Markey, William Ruezinsky, Sanjay Tyagi, Mona Batish

published 27 Mar 2014

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FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer

Priyabrata Panigrahi, Abhay Jere, Krishanpal Anamika

published 01 May 2018

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Fusion Transcript Discovery in Formalin-Fixed Paraffin-Embedded Human Breast Cancer Tissues Reveals a Link to Tumor Progression

Yan Ma, Ranjana Ambannavar, James Stephans, Jennie Jeong, Andrew Dei Rossi, Mei-Lan Liu, Adam J. Friedman, Jason J. Londry, Richard Abramson, Ellen M. Beasley, Joffre Baker, Samuel Levy, Kunbin Qu

published 11 Apr 2014

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Characterization of Human Mesenchymal Stem Cells from Ewing Sarcoma Patients. Pathogenetic Implications

Ana Teresa Amaral, Maria Cristina Manara, Dagmar Berghuis, José Luis Ordóñez, Michele Biscuola, Maria Angeles Lopez-García, Daniel Osuna, Enrico Lucarelli, Francesco Alviano, Arjan Lankester, Katia Scotlandi, Enrique de Álava

published 03 Feb 2014

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Whole Genome Analyses of a Well-Differentiated Liposarcoma Reveals Novel SYT1 and DDR2 Rearrangements

Jan B. Egan, Michael T. Barrett, Mia D. Champion, Sumit Middha, Elizabeth Lenkiewicz, Lisa Evers, Princy Francis, Jessica Schmidt, Chang-Xin Shi, Scott Van Wier, Sandra Badar, Gregory Ahmann, K. Martin Kortuem, Nicole J. Boczek, Rafael Fonseca, David W. Craig, John D. Carpten, Mitesh J. Borad, A. Keith Stewart

published 05 Feb 2014

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