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Epigenomics

Artificial intelligence and leukocyte epigenomics: Evaluation and prediction of late-onset Alzheimer’s disease

Ray O. Bahado-Singh, Sangeetha Vishweswaraiah, Buket Aydas, Ali Yilmaz, Raghu P. Metpally, David J. Carey, Richard C. Crist, Wade H. Berrettini, George D. Wilson, Khalid Imam, Michael Maddens, Halil Bisgin, Stewart F. Graham, Uppala Radhakrishna

published 31 Mar 2021

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Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information

Koh Onimaru, Osamu Nishimura, Shigehiro Kuraku

published 23 Jul 2020

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Exploring the overlap between rheumatoid arthritis susceptibility loci and long non-coding RNA annotations

James Ding, Chenfu Shi, John Bowes, Stephen Eyre, Gisela Orozco

published 20 Mar 2020

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A deadline constrained scheduling algorithm for cloud computing system based on the driver of dynamic essential path

Xia Shao, Zhiqiang Xie, Yu Xin, Jing Yang

published 08 Mar 2019

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Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data

Stephanie A. Bien, Paul L. Auer, Tabitha A. Harrison, Conghui Qu, Charles M. Connolly, Peyton G. Greenside, Sai Chen, Sonja I. Berndt, Stéphane Bézieau, Hyun M. Kang, Jeroen Huyghe, Hermann Brenner, Graham Casey, Andrew T. Chan, John L. Hopper, Barbara L. Banbury, Jenny Chang-Claude, Stephen J. Chanock, Robert W. Haile, Michael Hoffmeister, Christian Fuchsberger, Mark A. Jenkins, Suzanne M. Leal, Mathieu Lemire, Polly A. Newcomb, Steven Gallinger, John D. Potter, Robert E. Schoen, Martha L. Slattery, Joshua D. Smith, Loic Le Marchand, Emily White, Brent W. Zanke, Goncalo R. Abeçasis, Christopher S. Carlson, Ulrike Peters, Deborah A. Nickerson, Anshul Kundaje, Li Hsu, on behalf of GECCO and CCFR

published 21 Nov 2017

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Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN

Benedikt Zacher, Margaux Michel, Björn Schwalb, Patrick Cramer, Achim Tresch, Julien Gagneur

published 05 Jan 2017

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iFORM: Incorporating Find Occurrence of Regulatory Motifs

Chao Ren, Hebing Chen, Bite Yang, Feng Liu, Zhangyi Ouyang, Xiaochen Bo, Wenjie Shu

published 19 Dec 2016

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Extensive Association of Common Disease Variants with Regulatory Sequence

Michal Mokry, Magdalena Harakalova, Folkert W. Asselbergs, Paul I. W. de Bakker, Edward E. S. Nieuwenhuis

published 22 Nov 2016

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Tissue-Specific Enrichment of Lymphoma Risk Loci in Regulatory Elements

James E. Hayes, Gosia Trynka, Joseph Vijai, Kenneth Offit, Soumya Raychaudhuri, Robert J. Klein

published 30 Sep 2015

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Integrative Analysis of Transcriptomic and Epigenomic Data to Reveal Regulation Patterns for BMD Variation

Ji-Gang Zhang, Li-Jun Tan, Chao Xu, Hao He, Qing Tian, Yu Zhou, Chuan Qiu, Xiang-Ding Chen, Hong-Wen Deng

published 21 Sep 2015

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ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads

Christopher A. Miller, Oliver Hampton, Cristian Coarfa, Aleksandar Milosavljevic

published 31 Jan 2011

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Discovering Cooperative Relationships of Chromatin Modifications in Human T Cells Based on a Proposed Closeness Measure

Jie Lv, Hong Qiao, Hongbo Liu, Xueting Wu, Jiang Zhu, Jianzhong Su, Fang Wang, Ying Cui, Yan Zhang

published 03 Dec 2010

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