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Comparative genomics

Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?

Natalie Ward, Gabriel Moreno-Hagelsieb

published 11 Jul 2014

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Genomic Diversity within the Enterobacter cloacae Complex

Armand Paauw, Martien P. M. Caspers, Frank H. J. Schuren, Maurine A. Leverstein-van Hall, Alexis Delétoile, Roy C. Montijn, Jan Verhoef, Ad C. Fluit

published 21 Aug 2008

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Probiotic and anti-inflammatory potential of Lactobacillus rhamnosus 4B15 and Lactobacillus gasseri 4M13 isolated from infant feces

Nam Su Oh, Jae Yeon Joung, Ji Young Lee, Younghoon Kim

published 14 Feb 2018

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Genome Sequence of Cronobacter sakazakii BAA-894 and Comparative Genomic Hybridization Analysis with Other Cronobacter Species

Eva Kucerova, Sandra W. Clifton, Xiao-Qin Xia, Fred Long, Steffen Porwollik, Lucinda Fulton, Catrina Fronick, Patrick Minx, Kim Kyung, Wesley Warren, Robert Fulton, Dongyan Feng, Aye Wollam, Neha Shah, Veena Bhonagiri, William E. Nash, Kymberlie Hallsworth-Pepin, Richard K. Wilson, Michael McClelland, Stephen J. Forsythe

published 08 Mar 2010

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A Multi-Platform Draft de novo Genome Assembly and Comparative Analysis for the Scarlet Macaw (Ara macao)

Christopher M. Seabury, Scot E. Dowd, Paul M. Seabury, Terje Raudsepp, Donald J. Brightsmith, Poul Liboriussen, Yvette Halley, Colleen A. Fisher, Elaine Owens, Ganesh Viswanathan, Ian R. Tizard

published 08 May 2013

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The Genome Sequence of the North-European Cucumber (Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

Rafał Wóycicki, Justyna Witkowicz, Piotr Gawroński, Joanna Dąbrowska, Alexandre Lomsadze, Magdalena Pawełkowicz, Ewa Siedlecka, Kohei Yagi, Wojciech Pląder, Anna Seroczyńska, Mieczysław Śmiech, Wojciech Gutman, Katarzyna Niemirowicz-Szczytt, Grzegorz Bartoszewski, Norikazu Tagashira, Yoshikazu Hoshi, Mark Borodovsky, Stanisław Karpiński, Stefan Malepszy, Zbigniew Przybecki

published 28 Jul 2011

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Comparative Genomics and Transcriptomics of Propionibacterium acnes

Elzbieta Brzuszkiewicz, January Weiner, Antje Wollherr, Andrea Thürmer, Jennifer Hüpeden, Hans B. Lomholt, Mogens Kilian, Gerhard Gottschalk, Rolf Daniel, Hans-Joachim Mollenkopf, Thomas F. Meyer, Holger Brüggemann

published 27 Jun 2011

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Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles

Benoît Remenant, Jean-Charles de Cambiaire, Gilles Cellier, Jonathan M. Jacobs, Sophie Mangenot, Valérie Barbe, Aurélie Lajus, David Vallenet, Claudine Medigue, Mark Fegan, Caitilyn Allen, Philippe Prior

published 08 Sep 2011

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The Princeton Protein Orthology Database (P-POD): A Comparative Genomics Analysis Tool for Biologists

Sven Heinicke, Michael S. Livstone, Charles Lu, Rose Oughtred, Fan Kang, Samuel V. Angiuoli, Owen White, David Botstein, Kara Dolinski

published 22 Aug 2007

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CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics

Tammi Vesth, Karin Lagesen, Öncel Acar, David Ussery

published 05 Apr 2013

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A Glimpse of Streptococcal Toxic Shock Syndrome from Comparative Genomics of S. suis 2 Chinese Isolates

Chen Chen, Jiaqi Tang, Wei Dong, Changjun Wang, Youjun Feng, Jing Wang, Feng Zheng, Xiuzhen Pan, Di Liu, Ming Li, Yajun Song, Xinxing Zhu, Haibo Sun, Tao Feng, Zhaobiao Guo, Aiping Ju, Junchao Ge, Yaqing Dong, Wen Sun, Yongqiang Jiang, Jun Wang, Jinghua Yan, Huanming Yang, Xiaoning Wang, George F. Gao, Ruifu Yang, Jian Wang, Jun Yu

published 21 Mar 2007

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Comparative Genomics of Mycoplasma: Analysis of Conserved Essential Genes and Diversity of the Pan-Genome

Wei Liu, Liurong Fang, Mao Li, Sha Li, Shaohua Guo, Rui Luo, Zhixin Feng, Bin Li, Zhemin Zhou, Guoqing Shao, Huanchun Chen, Shaobo Xiao

published 20 Apr 2012

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De Novo Assembly of the Complete Genome of an Enhanced Electricity-Producing Variant of Geobacter sulfurreducens Using Only Short Reads

Harish Nagarajan, Jessica E. Butler, Anna Klimes, Yu Qiu, Karsten Zengler, Joy Ward, Nelson D. Young, Barbara A. Methé, Bernhard Ø. Palsson, Derek R. Lovley, Christian L. Barrett

published 08 Jun 2010

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