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Comparative genomics

Speeding genomic island discovery through systematic design of reference database composition

Steven L. Yu, Catherine M. Mageeney, Fatema Shormin, Noushin Ghaffari, Kelly P. Williams

published 13 Mar 2024

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Comparative genomic analysis of Methylocystis sp. MJC1 as a platform strain for polyhydroxybutyrate biosynthesis

Sanzhar Naizabekov, Seung Woon Hyun, Jeong-Geol Na, Sukhwan Yoon, Ok Kyung Lee, Eun Yeol Lee

published 10 May 2023

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Genomic diversity in Fructobacillus spp. isolated from fructose-rich niches

Florencia Mohamed, Luciana G. Ruiz Rodriguez, Azul Zorzoli, Helge C. Dorfmueller, Raúl R. Raya, Fernanda Mozzi

published 16 Feb 2023

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Insights into the genome of Methylobacterium sp. NMS14P, a novel bacterium for growth promotion of maize, chili, and sugarcane

Jiraporn Jirakkakul, Ahmad Nuruddin Khoiri, Thanawat Duangfoo, Sudarat Dulsawat, Sawannee Sutheeworapong, Kantiya Petsong, Songsak Wattanachaisaereekul, Prasobsook Paenkaew, Anuwat Tachaleat, Supapon Cheevadhanarak, Peerada Prommeenate

published 07 Feb 2023

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Genetic associations with resistance to Meloidogyne enterolobii in guava (Psidium sp.) using cross-genera SNPs and comparative genomics to Eucalyptus highlight evolutionary conservation across the Myrtaceae

Carlos Antonio Fernandes Santos, Soniane Rodrigues da Costa, Leonardo Silva Boiteux, Dario Grattapaglia, Orzenil Bonfim Silva-Junior

published 02 Nov 2022

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Comparative analysis of chloroplast genomes of three medicinal Carpesium species: Genome structures and phylogenetic relationships

Xingyu Shi, Wenfen Xu, Mingxiang Wan, Qingwen Sun, Qiyu Chen, Chao Zhao, Kaifen Sun, Yanxia Shu

published 05 Aug 2022

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Genome insights from the identification of a novel Pandoraea sputorum isolate and its characteristics

Rui-Fang Gao, Ying Wang, Ying Wang, Zhi-Wen Wang, Gui-Ming Zhang

published 05 Aug 2022

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Whole-genome sequencing for the characterization of resistance mechanisms and epidemiology of colistin-resistant Acinetobacter baumannii

Chorong Hahm, Hae-Sun Chung, Miae Lee

published 04 Mar 2022

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Prometheus, an omics portal for interkingdom comparative genomic analyses

Gunhwan Ko, Insu Jang, Namjin Koo, Seong-Jin Park, Sang-Ho Oh, Min-Seo Kim, Jin-Hyuk Choi, Hyeongmin Kim, Young Mi Sim, Iksu Byeon, Pan-Gyu Kim, Kye Young Kim, Jong-Cheol Yoon, Kyung-Lok Mun, Banghyuk Lee, Gukhee Han, Yong-Min Kim

published 28 Oct 2020

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Logicome Profiler: Exhaustive detection of statistically significant logic relationships from comparative omics data

Tsukasa Fukunaga, Wataru Iwasaki

published 01 May 2020

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Development and characterization of genomic resources for a non-model marine teleost, the red snapper (Lutjanus campechanus, Lutjanidae): Construction of a high-density linkage map, anchoring of genome contigs and comparative genomic analysis

Adrienne E. Norrell, Kenneth L. Jones, Eric A. Saillant

published 29 Apr 2020

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Two genes involved in clindamycin resistance of Bacillus licheniformis and Bacillus paralicheniformis identified by comparative genomic analysis

Do-Won Jeong, Byunghoon Lee, Sojeong Heo, Yeongmin Oh, Ganghun Heo, Jong-Hoon Lee

published 09 Apr 2020

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Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family

Gustavo Akira Toma, Renata Luiza Rosa de Moraes, Francisco de Menezes Cavalcante Sassi, Luiz Antonio Carlos Bertollo, Ezequiel Aguiar de Oliveira, Petr Rab, Alexandr Sember, Thomas Liehr, Terumi Hatanaka, Patrik Ferreira Viana, Manoela Maria Ferreira Marinho, Eliana Feldberg, Marcelo de Bello Cioffi

published 19 Dec 2019

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