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Bioinformatics

Complete Genes May Pass from Food to Human Blood

Sándor Spisák, Norbert Solymosi, Péter Ittzés, András Bodor, Dániel Kondor, Gábor Vattay, Barbara K. Barták, Ferenc Sipos, Orsolya Galamb, Zsolt Tulassay, Zoltán Szállási, Simon Rasmussen, Thomas Sicheritz-Ponten, Søren Brunak, Béla Molnár, István Csabai

published 30 Jul 2013

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RNA-Seq differential expression analysis: An extended review and a software tool

Juliana Costa-Silva, Douglas Domingues, Fabricio Martins Lopes

published 21 Dec 2017

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Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d’Ivoire

Christiane Essoh, Libera Latino, Cédric Midoux, Yann Blouin, Guillaume Loukou, Simon-Pierre A. Nguetta, Serge Lathro, Arsher Cablanmian, Athanase K. Kouassi, Gilles Vergnaud, Christine Pourcel

published 26 Jun 2015

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Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens

Ramya Srinivasan, Ulas Karaoz, Marina Volegova, Joanna MacKichan, Midori Kato-Maeda, Steve Miller, Rohan Nadarajan, Eoin L. Brodie, Susan V. Lynch

published 06 Feb 2015

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The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

Takaya Saito, Marc Rehmsmeier

published 04 Mar 2015

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Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

Yong Wang, Pei-Yuan Qian

published 09 Oct 2009

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Protein 3D Structure Computed from Evolutionary Sequence Variation

Debora S. Marks, Lucy J. Colwell, Robert Sheridan, Thomas A. Hopf, Andrea Pagnani, Riccardo Zecchina, Chris Sander

published 07 Dec 2011

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FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

published 10 Mar 2010

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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

Chengwei Luo, Despina Tsementzi, Nikos Kyrpides, Timothy Read, Konstantinos T. Konstantinidis

published 10 Feb 2012

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An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Cristian Del Fabbro, Simone Scalabrin, Michele Morgante, Federico M. Giorgi

published 23 Dec 2013

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Assessment and verification of commercially available pressure cookers for laboratory sterilization

Vaille A. Swenson, Amanda D. Stacy, Michael O. Gaylor, Blake Ushijima, Benjamin Philmus, Loralyn M. Cozy, Nina M. Videau, Patrick Videau

published 11 Dec 2018

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Ubiquity and Diversity of Human-Associated Demodex Mites

Megan S. Thoemmes, Daniel J. Fergus, Julie Urban, Michelle Trautwein, Robert R. Dunn

published 27 Aug 2014

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DNA Barcoding the Native Flowering Plants and Conifers of Wales

Natasha de Vere, Tim C. G. Rich, Col R. Ford, Sarah A. Trinder, Charlotte Long, Chris W. Moore, Danielle Satterthwaite, Helena Davies, Joel Allainguillaume, Sandra Ronca, Tatiana Tatarinova, Hannah Garbett, Kevin Walker, Mike J. Wilkinson

published 06 Jun 2012

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