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Bioinformatics

Complete Genes May Pass from Food to Human Blood

Sándor Spisák, Norbert Solymosi, [ ... ], István Csabai

RNA-Seq differential expression analysis: An extended review and a software tool

Juliana Costa-Silva, Douglas Domingues, Fabricio Martins Lopes

Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d’Ivoire

Christiane Essoh, Libera Latino, [ ... ], Christine Pourcel

Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens

Ramya Srinivasan, Ulas Karaoz, [ ... ], Susan V. Lynch

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

Takaya Saito, Marc Rehmsmeier

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

Yong Wang, Pei-Yuan Qian

Protein 3D Structure Computed from Evolutionary Sequence Variation

Debora S. Marks, Lucy J. Colwell, [ ... ], Chris Sander

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

Chengwei Luo, Despina Tsementzi, [ ... ], Konstantinos T. Konstantinidis

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Cristian Del Fabbro, Simone Scalabrin, Michele Morgante, Federico M. Giorgi

Assessment and verification of commercially available pressure cookers for laboratory sterilization

Vaille A. Swenson, Amanda D. Stacy, [ ... ], Patrick Videau

Ubiquity and Diversity of Human-Associated Demodex Mites

Megan S. Thoemmes, Daniel J. Fergus, [ ... ], Robert R. Dunn

DNA Barcoding the Native Flowering Plants and Conifers of Wales

Natasha de Vere, Tim C. G. Rich, [ ... ], Mike J. Wilkinson

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