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Sequencing techniques

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

Robert J. Elshire, Jeffrey C. Glaubitz, [ ... ], Sharon E. Mitchell

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

Brant K. Peterson, Jesse N. Weber, [ ... ], Hopi E. Hoekstra

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes

RNA-Seq differential expression analysis: An extended review and a software tool

Juliana Costa-Silva, Douglas Domingues, Fabricio Martins Lopes

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

Shanrong Zhao, Wai-Ping Fung-Leung, [ ... ], Xuejun Liu

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

Nathan A. Baird, Paul D. Etter, [ ... ], Eric A. Johnson

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

Chengwei Luo, Despina Tsementzi, [ ... ], Konstantinos T. Konstantinidis

Golden Gate Shuffling: A One-Pot DNA Shuffling Method Based on Type IIs Restriction Enzymes

Carola Engler, Ramona Gruetzner, Romy Kandzia, Sylvestre Marillonnet

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Cristian Del Fabbro, Simone Scalabrin, Michele Morgante, Federico M. Giorgi

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, [ ... ], Bairong Shen

Predicting the Functional Effect of Amino Acid Substitutions and Indels

Yongwook Choi, Gregory E. Sims, [ ... ], Agnes P. Chan

Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types

Julia Salzman, Charles Gawad, [ ... ], Patrick O. Brown

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