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Protein interaction networks

ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software

Mathieu Jacomy, Tommaso Venturini, Sebastien Heymann, Mathieu Bastian

Relaxation Response Induces Temporal Transcriptome Changes in Energy Metabolism, Insulin Secretion and Inflammatory Pathways

Manoj K. Bhasin, Jeffery A. Dusek, [ ... ], Towia A. Libermann

The "Majority Illusion" in Social Networks

Kristina Lerman, Xiaoran Yan, Xin-Zeng Wu

Classification of Beta-Lactamases and Penicillin Binding Proteins Using Ligand-Centric Network Models

Hakime Öztürk, Elif Ozkirimli, Arzucan Özgür

Use of Natural Products as Chemical Library for Drug Discovery and Network Pharmacology

Jiangyong Gu, Yuanshen Gui, [ ... ], Xiaojie Xu

Automated Network Analysis Identifies Core Pathways in Glioblastoma

Ethan Cerami, Emek Demir, [ ... ], Chris Sander

Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast

Maria I. Davidich, Stefan Bornholdt

Characterizing the Community Structure of Complex Networks

Andrea Lancichinetti, Mikko Kivelä, Jari Saramäki, Santo Fortunato

Passing Messages between Biological Networks to Refine Predicted Interactions

Kimberly Glass, Curtis Huttenhower, John Quackenbush, Guo-Cheng Yuan

Gene-Disease Network Analysis Reveals Functional Modules in Mendelian, Complex and Environmental Diseases

Anna Bauer-Mehren, Markus Bundschus, [ ... ], Laura I. Furlong

A Comparison of Computational Methods for Identifying Virulence Factors

Lu-Lu Zheng, Yi-Xue Li, [ ... ], Kuo-Chen Chou

Boolean Network Model for Cancer Pathways: Predicting Carcinogenesis and Targeted Therapy Outcomes

Herman F. Fumiã, Marcelo L. Martins

Network-Based Relating Pharmacological and Genomic Spaces for Drug Target Identification

Shiwen Zhao, Shao Li

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