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Programming languages

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

Open source software in quantum computing

Mark Fingerhuth, Tomáš Babej, Peter Wittek

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

Wei Shen, Shuai Le, Yan Li, Fuquan Hu

An Evaluation Framework and Comparative Analysis of the Widely Used First Programming Languages

Muhammad Shoaib Farooq, Sher Afzal Khan, [ ... ], Adnan Abid

Parametric CAD modeling for open source scientific hardware: Comparing OpenSCAD and FreeCAD Python scripts

Felipe Machado, Norberto Malpica, Susana Borromeo

The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web

Janna Hastings, Leonid Chepelev, [ ... ], Michel Dumontier

OxMaR: Open Source Free Software for Online Minimization and Randomization for Clinical Trials

Christopher A. O’Callaghan

SPOTting Model Parameters Using a Ready-Made Python Package

Tobias Houska, Philipp Kraft, Alejandro Chamorro-Chavez, Lutz Breuer

Open Source Software to Control Bioflo Bioreactors

David A. Burdge, Igor G. L. Libourel

A Format for Phylogenetic Placements

Frederick A. Matsen, Noah G. Hoffman, Aaron Gallagher, Alexandros Stamatakis

Community evolution on Stack Overflow

Iraklis Moutidis, Hywel T. P. Williams

Mining Biological Pathways Using WikiPathways Web Services

Thomas Kelder, Alexander R. Pico, [ ... ], Bruce R. Conklin

Quanfima: An open source Python package for automated fiber analysis of biomaterials

Roman Shkarin, Andrei Shkarin, [ ... ], Ralf Mikut

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