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Microbial genomics

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes

Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d’Ivoire

Christiane Essoh, Libera Latino, [ ... ], Christine Pourcel

A Jungle in There: Bacteria in Belly Buttons are Highly Diverse, but Predictable

Jiri Hulcr, Andrew M. Latimer, [ ... ], Robert R. Dunn

Composition of Human Skin Microbiota Affects Attractiveness to Malaria Mosquitoes

Niels O. Verhulst, Yu Tong Qiu, [ ... ], Renate C. Smallegange

Antibiotic Resistance Is Prevalent in an Isolated Cave Microbiome

Kirandeep Bhullar, Nicholas Waglechner, [ ... ], Gerard D. Wright

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

Tomáš Větrovský, Petr Baldrian

Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children

Dae-Wook Kang, Jin Gyoon Park, [ ... ], Rosa Krajmalnik-Brown

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Patrick D. Schloss, Dirk Gevers, Sarah L. Westcott

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling, Bob Mau, Nicole T. Perna

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy

Kjersti Aagaard, Kevin Riehle, [ ... ], James Versalovic

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

Bruce J. Walker, Thomas Abeel, [ ... ], Ashlee M. Earl

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

Christian Hoffmann, Serena Dollive, [ ... ], Frederic D. Bushman

The Effects of Circumcision on the Penis Microbiome

Lance B. Price, Cindy M. Liu, [ ... ], Ronald H. Gray

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