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Microbial genetics

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

Tomáš Větrovský, Petr Baldrian

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling, Bob Mau, Nicole T. Perna

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

Bruce J. Walker, Thomas Abeel, [ ... ], Ashlee M. Earl

Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

Alexander Mellmann, Dag Harmsen, [ ... ], Helge Karch

Detection of Bacterial 16S rRNA and Identification of Four Clinically Important Bacteria by Real-Time PCR

Robert J. Clifford, Michael Milillo, [ ... ], Patrick Mc Gann

Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly

Yen-Chun Chen, Tsunglin Liu, [ ... ], Chi-Chuan Hwang

Sequencing DNA with nanopores: Troubles and biases

Clara Delahaye, Jacques Nicolas

Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices

Jenna Morgan Lang, Aaron E. Darling, Jonathan A. Eisen

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Andrew Tritt, Jonathan A. Eisen, Marc T. Facciotti, Aaron E. Darling

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

De Novo Designed Proteins from a Library of Artificial Sequences Function in Escherichia Coli and Enable Cell Growth

Michael A. Fisher, Kara L. McKinley, [ ... ], Michael H. Hecht

A novel Pseudomonas aeruginosa Bacteriophage, Ab31, a Chimera Formed from Temperate Phage PAJU2 and P. putida Lytic Phage AF: Characteristics and Mechanism of Bacterial Resistance

Libera Latino, Christiane Essoh, [ ... ], Christine Pourcel

A System to Automatically Classify and Name Any Individual Genome-Sequenced Organism Independently of Current Biological Classification and Nomenclature

Haitham Marakeby, Eman Badr, [ ... ], Boris A. Vinatzer

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