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Microbial evolution

Assessing the emergence time of SARS-CoV-2 zoonotic spillover

Stéphane Samson, Étienne Lord, Vladimir Makarenkov

The contribution of abortive infection to preventing populations of Lactococcus lactis from succumbing to infections with bacteriophage

Eduardo Rodríguez-Román, Joshua A. Manuel, David Goldberg, Bruce R. Levin

The weekly P25 of the age of the influenza-like illness shows a higher correlation with COVID-19 mortality than rapid tests and could predict the evolution of COVID-19 pandemics in sentinel surveillance, Piura, Perú, 2021

Víctor Raúl Ocaña Gutiérrez, Rodolfo Arturo González Ramírez, [ ... ], Carlos Enrique Holguín Mauricci

AutoPhy: Automated phylogenetic identification of novel protein subfamilies

Adrian N. Ortiz-Velez, Jeet Sukumaran, Ryin Rouzbehani, Scott T. Kelley

Molecular evidence for potential transovarial transmission of Dabieshan tick virus in Haemaphysalis longicornis from Shandong Province, China

Anan Wang, Yunfeng Tang, [ ... ], Guoyu Niu

A deterministic compartmental model for the transition between variants in the spread of Covid-19 in Italy

Mario Saviano, Annalisa Fierro, Antonella Liccardo

Antibody escape, the risk of serotype formation, and rapid immune waning: Modeling the implications of SARS-CoV-2 immune evasion

Catherine Albright, Debra Van Egeren, [ ... ], Madison Stoddard

Integrating gene expression data into a genome-scale metabolic model to identify reprogramming during adaptive evolution

Shaghayegh Yazdanpanah, Ehsan Motamedian, Seyed Abbas Shojaosadati

Assessment of positive selection across SARS-CoV-2 variants via maximum likelihood

Carly Middleton, Laura Kubatko

Optimal age-specific vaccination control for COVID-19: An Irish case study

Eleni Zavrakli, Andrew Parnell, [ ... ], Subhrakanti Dey

In silico epitope prediction and evolutionary analysis reveals capsid mutation patterns for enterovirus B

Hui Wang, Yulu Fang, [ ... ], Changzheng Dong

The chaos law is a principal driver of natural selection: A proposition on the evolution of recently emerged coronaviruses

Pier Francesco Roggero, Arianna Calistri, Giorgio Palù

Microbiome distribution modeling using gradient descent strategies for mock, in vitro and clinical community distributions

Juan Ricardo Velasco-Álvarez, Nimbe Torres y Torres, Isaac Chairez, José Luis Castrejón-Flores

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