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Metabolic networks

Weighted Correlation Network Analysis (WGCNA) Applied to the Tomato Fruit Metabolome

Matthew V. DiLeo, Gary D. Strahan, Meghan den Bakker, Owen A. Hoekenga

The Tricarboxylic Acid Cycle, an Ancient Metabolic Network with a Novel Twist

Ryan J. Mailloux, Robin Bériault, [ ... ], Vasu D. Appanna

Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration

Kwanjeera Wanichthanarak, Sili Fan, [ ... ], Oliver Fiehn

Effects of Psychological Stress on Innate Immunity and Metabolism in Humans: A Systematic Analysis

Sushri Priyadarshini, Palok Aich

Duality between Time Series and Networks

Andriana S. L. O. Campanharo, M. Irmak Sirer, [ ... ], Luís A. Nunes. Amaral

Community Flux Balance Analysis for Microbial Consortia at Balanced Growth

Ruchir A. Khandelwal, Brett G. Olivier, [ ... ], Frank J. Bruggeman

MediaDB: A Database of Microbial Growth Conditions in Defined Media

Matthew A. Richards, Victor Cassen, [ ... ], Nathan D. Price

Modulation of the Metabiome by Rifaximin in Patients with Cirrhosis and Minimal Hepatic Encephalopathy

Jasmohan S. Bajaj, Douglas M. Heuman, [ ... ], Patrick M. Gillevet

A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease

Carl J. Yeoman, Susan M. Thomas, [ ... ], Bryan A. White

Systematic Construction of Kinetic Models from Genome-Scale Metabolic Networks

Natalie J. Stanford, Timo Lubitz, [ ... ], Wolfram Liebermeister

UniDrug-Target: A Computational Tool to Identify Unique Drug Targets in Pathogenic Bacteria

Sree Krishna Chanumolu, Chittaranjan Rout, Rajinder S. Chauhan

Interaction with Diurnal and Circadian Regulation Results in Dynamic Metabolic and Transcriptional Changes during Cold Acclimation in Arabidopsis

Carmen Espinoza, Thomas Degenkolbe, [ ... ], Matthew A. Hannah

Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom

Jennifer Levering, Jared Broddrick, [ ... ], Karsten Zengler

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