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Genetic networks

Relaxation Response Induces Temporal Transcriptome Changes in Energy Metabolism, Insulin Secretion and Inflammatory Pathways

Manoj K. Bhasin, Jeffery A. Dusek, [ ... ], Towia A. Libermann

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

Vân Anh Huynh-Thu, Alexandre Irrthum, Louis Wehenkel, Pierre Geurts

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

Daniele Merico, Ruth Isserlin, [ ... ], Gary D. Bader

High-Resolution Transcriptome of Human Macrophages

Marc Beyer, Michael R. Mallmann, [ ... ], Joachim L. Schultze

Automated Network Analysis Identifies Core Pathways in Glioblastoma

Ethan Cerami, Emek Demir, [ ... ], Chris Sander

Pathway Network Analyses for Autism Reveal Multisystem Involvement, Major Overlaps with Other Diseases and Convergence upon MAPK and Calcium Signaling

Ya Wen, Mohamad J. Alshikho, Martha R. Herbert

A Comparison of Phylogenetic Network Methods Using Computer Simulation

Steven M. Woolley, David Posada, Keith A. Crandall

Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast

Maria I. Davidich, Stefan Bornholdt

Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration

Kwanjeera Wanichthanarak, Sili Fan, [ ... ], Oliver Fiehn

Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays

Rajandeep S. Sekhon, Roman Briskine, [ ... ], Shawn M. Kaeppler

Effects of Psychological Stress on Innate Immunity and Metabolism in Humans: A Systematic Analysis

Sushri Priyadarshini, Palok Aich

Passing Messages between Biological Networks to Refine Predicted Interactions

Kimberly Glass, Curtis Huttenhower, John Quackenbush, Guo-Cheng Yuan

When Is Hub Gene Selection Better than Standard Meta-Analysis?

Peter Langfelder, Paul S. Mischel, Steve Horvath

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