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Gene identification and analysis

Relaxation Response Induces Temporal Transcriptome Changes in Energy Metabolism, Insulin Secretion and Inflammatory Pathways

Manoj K. Bhasin, Jeffery A. Dusek, [ ... ], Towia A. Libermann

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

Vân Anh Huynh-Thu, Alexandre Irrthum, Louis Wehenkel, Pierre Geurts

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

Daniele Merico, Ruth Isserlin, [ ... ], Gary D. Bader

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

A PCR Based Protocol for Detecting Indel Mutations Induced by TALENs and CRISPR/Cas9 in Zebrafish

Chuan Yu, Yaguang Zhang, Shaohua Yao, Yuquan Wei

High-Resolution Transcriptome of Human Macrophages

Marc Beyer, Michael R. Mallmann, [ ... ], Joachim L. Schultze

Synergistic and Antagonistic Drug Combinations Depend on Network Topology

Ning Yin, Wenzhe Ma, [ ... ], Luhua Lai

Benefits and Challenges with Applying Unique Molecular Identifiers in Next Generation Sequencing to Detect Low Frequency Mutations

Ruqin Kou, Ham Lam, [ ... ], Shihong Li

Multiplex Fluorescence Melting Curve Analysis for Mutation Detection with Dual-Labeled, Self-Quenched Probes

Qiuying Huang, Zanzan Liu, [ ... ], Qingge Li

Automated Network Analysis Identifies Core Pathways in Glioblastoma

Ethan Cerami, Emek Demir, [ ... ], Chris Sander

Pathway Network Analyses for Autism Reveal Multisystem Involvement, Major Overlaps with Other Diseases and Convergence upon MAPK and Calcium Signaling

Ya Wen, Mohamad J. Alshikho, Martha R. Herbert

High-Efficiency FLP and ΦC31 Site-Specific Recombination in Mammalian Cells

Christopher S. Raymond, Philippe Soriano

A Comparison of Phylogenetic Network Methods Using Computer Simulation

Steven M. Woolley, David Posada, Keith A. Crandall

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