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Computational biology

Genome Features of “Dark-Fly”, a Drosophila Line Reared Long-Term in a Dark Environment

Minako Izutsu, Jun Zhou, [ ... ], Naoyuki Fuse

A comprehensive SARS-CoV-2 genomic analysis identifies potential targets for drug repurposing

Nithishwer Mouroug Anand, Devang Haresh Liya, [ ... ], Ashwin Kumar Jainarayanan

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

Brant K. Peterson, Jesse N. Weber, [ ... ], Hopi E. Hoekstra

Exon Exchange Approach to Repair Duchenne Dystrophin Transcripts

Stéphanie Lorain, Cécile Peccate, Maëva Le Hir, Luis Garcia

On Pixel-Wise Explanations for Non-Linear Classifier Decisions by Layer-Wise Relevance Propagation

Sebastian Bach, Alexander Binder, [ ... ], Wojciech Samek

RNA-Seq differential expression analysis: An extended review and a software tool

Juliana Costa-Silva, Douglas Domingues, Fabricio Martins Lopes

Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d’Ivoire

Christiane Essoh, Libera Latino, [ ... ], Christine Pourcel

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek, Matko Bošnjak, Nives Škunca, Tomislav Šmuc

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

Shanrong Zhao, Wai-Ping Fung-Leung, [ ... ], Xuejun Liu

Resistance Exercise Reverses Aging in Human Skeletal Muscle

Simon Melov, Mark A. Tarnopolsky, [ ... ], Alan Hubbard

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

Genomic Counter-Stress Changes Induced by the Relaxation Response

Jeffery A. Dusek, Hasan H. Otu, [ ... ], Towia A. Libermann

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

Takaya Saito, Marc Rehmsmeier

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