Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak

• Midori Kato-Maeda ,

  * E-mail: midori.kato-maeda@ucsf.edu

  Affiliation Curry International Tuberculosis Center, Division of Pulmonary and Critical Care Medicine, University of California San Francisco, San Francisco, California, United States of America

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• Christine Ho,

  Affiliations Tuberculosis Control Section, San Francisco Department of Public Health, San Francisco, California, United States of America, Centers for Disease Control (CDC), Division of TB Elimination, Field Services and Evaluation Branch (CDC/DTBE/FSEB), Atlanta, Georgia, United States of America

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• Ben Passarelli,

  Affiliation Department of Bioengineering, Stanford University, Palo Alto, California, United States of America

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• Niaz Banaei,

  Affiliation Department of Pathology, Stanford University, Palo Alto, California, United States of America

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• Jennifer Grinsdale,

  Affiliation Tuberculosis Control Section, San Francisco Department of Public Health, San Francisco, California, United States of America

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• Laura Flores,

  Affiliation Curry International Tuberculosis Center, Division of Pulmonary and Critical Care Medicine, University of California San Francisco, San Francisco, California, United States of America

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• Jillian Anderson,

  Affiliation Curry International Tuberculosis Center, Division of Pulmonary and Critical Care Medicine, University of California San Francisco, San Francisco, California, United States of America

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• Megan Murray,

  Affiliation Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, United States of America

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• Graham Rose,

  Affiliation MRC National Institute for Medical Research, London, United Kingdom

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• L. Masae Kawamura,

  Affiliation Tuberculosis Control Section, San Francisco Department of Public Health, San Francisco, California, United States of America

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• Nader Pourmand,

  Affiliation Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America

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• Muhammad A. Tariq,

  Affiliation Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America

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• Sebastien Gagneux,

  Affiliations Swiss Tropical and Public Health Institute, Basel, Switzerland, University of Basel, Basel, Switzerland

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• Philip C. Hopewell

  Affiliation Curry International Tuberculosis Center, Division of Pulmonary and Critical Care Medicine, University of California San Francisco, San Francisco, California, United States of America

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