MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima; Shinichi Sunagawa; Junhua Li; Weineng Chen; Hua Chen; Daniel R. Mende; Manimozhiyan Arumugam; Qi Pan; Binghang Liu; Junjie Qin; Jun Wang; Peer Bork

doi:10.1371/journal.pone.0047656

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Open Access

Peer-reviewed

Research Article

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima ,

Contributed equally to this work with: Jens Roat Kultima, Shinichi Sunagawa

Affiliation Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
⨯
Shinichi Sunagawa ,

Contributed equally to this work with: Jens Roat Kultima, Shinichi Sunagawa

Affiliation Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
⨯
Junhua Li,

Affiliations Department of Science and Technology, BGI-Shenzhen, Shenzhen, Guangdong, China, School of Bioscience and Biotechnology, South China University of Technology, Guangzhou, Guangdong, China
⨯
Weineng Chen,

Affiliation Department of Science and Technology, BGI-Shenzhen, Shenzhen, Guangdong, China
⨯
Hua Chen,

Affiliation Department of Science and Technology, BGI-Shenzhen, Shenzhen, Guangdong, China
⨯
Daniel R. Mende,

Affiliation Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
⨯
Manimozhiyan Arumugam,

Affiliation Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
⨯
Qi Pan,

Affiliation Department of Science and Technology, BGI-Shenzhen, Shenzhen, Guangdong, China
⨯
Binghang Liu,

Affiliation Department of Science and Technology, BGI-Shenzhen, Shenzhen, Guangdong, China
⨯
Junjie Qin,

Affiliation Department of Science and Technology, BGI-Shenzhen, Shenzhen, Guangdong, China
⨯
Jun Wang,

Affiliation Department of Science and Technology, BGI-Shenzhen, Shenzhen, Guangdong, China
⨯
Peer Bork

* E-mail: bork@embl.de

Affiliations Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany, Max-Delbruck-Centre for Molecular Medicine, Berlin-Buch, Germany
⨯

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima,
Shinichi Sunagawa,
Junhua Li,
Weineng Chen,
Hua Chen,
Daniel R. Mende,
Manimozhiyan Arumugam,
Qi Pan,
Binghang Liu,
Junjie Qin

x

Published: October 17, 2012
https://doi.org/10.1371/journal.pone.0047656

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Metagenomics
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Gene prediction
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Human genomics
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Computational pipelines
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Computer software
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Sequence alignment
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Sequence databases
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Data processing
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