BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology

• Thomas E. Gorochowski ,

  * E-mail: thomas.gorochowski@bristol.ac.uk

  Affiliation Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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• Antoni Matyjaszkiewicz,

  Affiliation Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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• Thomas Todd,

  Affiliation Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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• Neeraj Oak,

  Affiliation Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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• Kira Kowalska,

  Affiliation Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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• Stephen Reid,

  Affiliation Bristol Centre for Complexity Sciences, Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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• Krasimira T. Tsaneva-Atanasova,

  Affiliation Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom

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• Nigel J. Savery ,

  Contributed equally to this work with: Nigel J. Savery, Claire S. Grierson, Mario di Bernardo

  Affiliation School of Biochemistry, Medical Sciences, University Walk, Bristol, United Kingdom

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• Claire S. Grierson ,

  Contributed equally to this work with: Nigel J. Savery, Claire S. Grierson, Mario di Bernardo

  Affiliation School of Biological Sciences, University of Bristol, Bristol, United Kingdom

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• Mario di Bernardo

  Contributed equally to this work with: Nigel J. Savery, Claire S. Grierson, Mario di Bernardo

  Affiliations Department of Engineering Mathematics, University of Bristol, Bristol, United Kingdom, Department of Systems and Computer Engineering, University of Naples Federico II, Napoli, Italy

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