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Open Access

Peer-reviewed

Research Article

Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results

  • Niina Haiminen ,

    nhaimin@us.ibm.com (NH); isidore.rigoutsos@jefferson.edu (IR)

    Affiliation Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York, United States of America

    ⨯
  • David N. Kuhn,

    Affiliation Subtropical Horticulture Research Station, Agricultural Research Service (ARS), United States Department of Agriculture (USDA), Miami, Florida, United Sates of America

    ⨯
  • Laxmi Parida,

    Affiliation Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York, United States of America

    ⨯
  • Isidore Rigoutsos

    nhaimin@us.ibm.com (NH); isidore.rigoutsos@jefferson.edu (IR)

    Current address: Computational Medicine Center, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America

    Affiliation Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York, United States of America

    ⨯

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