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Evaluating Experimental Bias and Completeness in Comparative Phosphoproteomics Analysis

  • Jos Boekhorst ,

    Jos.Boekhorst@gmail.com

    Current address: NIZO Food Research, Ede, The Netherlands

    Affiliation Theoretical Biology and Bioinformatics, Department of Biology, Faculty of Science, Utrecht University, Utrecht, The Netherlands

  • Paul J. Boersema,

    Affiliations Biomolecular Mass Spectrometry and Proteomics Group, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands, Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany

  • Bastiaan B. J. Tops,

    Affiliation Biomolecular Mass Spectrometry and Proteomics Group, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands

  • Bas van Breukelen,

    Affiliation Biomolecular Mass Spectrometry and Proteomics Group, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands

  • Albert J. R. Heck,

    Affiliation Biomolecular Mass Spectrometry and Proteomics Group, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands

  • Berend Snel

    Affiliations Theoretical Biology and Bioinformatics, Department of Biology, Faculty of Science, Utrecht University, Utrecht, The Netherlands, Netherlands Consortium for Systems Biology (NCSB), Amsterdam, The Netherlands, Centre for Biosystems Genomics, Wageningen, The Netherlands

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