Deep Sequencing of Target Linkage Assay-Identified Regions in Familial Breast Cancer: Methods, Analysis Pipeline and Troubleshooting

• Juan Manuel Rosa-Rosa,

  Affiliation Human Genetics Group, Spanish National Cancer Research Centre (CNIO), Madrid, Spain

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• Francisco Javier Gracia-Aznárez,

  Affiliation Human Genetics Group, Spanish National Cancer Research Centre (CNIO), Madrid, Spain

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• Emily Hodges,

  Affiliation Howard Hughes Medical Institute, Cold Spring Harbor Laboratory (CSHL), Cold Spring Harbor, New York, United States of America

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• Guillermo Pita,

  Affiliation Genotyping Unit (CEGEN), Spanish National Cancer Research Centre, Madrid, Spain

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• Michelle Rooks,

  Affiliation Howard Hughes Medical Institute, Cold Spring Harbor Laboratory (CSHL), Cold Spring Harbor, New York, United States of America

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• Zhenyu Xuan,

  Affiliation Department of Molecular and Cell Biology, The University of Texas, Richardson, Texas, United States of America

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• Arindam Bhattacharjee,

  Affiliation Agilent Technologies, Inc., Santa Clara, California, United States of America

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• Leonardo Brizuela,

  Affiliation Agilent Technologies, Inc., Santa Clara, California, United States of America

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• José M. Silva,

  Affiliation Irving Cancer Research Center, New York, New York, United States of America

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• Gregory J. Hannon,

  Affiliation Howard Hughes Medical Institute, Cold Spring Harbor Laboratory (CSHL), Cold Spring Harbor, New York, United States of America

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• Javier Benitez

  * E-mail: jbenitez@cnio.es

  Affiliations Human Genetics Group, Spanish National Cancer Research Centre (CNIO), Madrid, Spain, Genotyping Unit (CEGEN), Spanish National Cancer Research Centre, Madrid, Spain

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