SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins

Open Access

Peer-reviewed

Research Article

Richard J. Edwards ,

*To whom correspondence should be addressed. E-mail: r.edwards@soton.ac.uk

Affiliations University College Dublin Complex and Adaptive Systems Laboratory, University College Dublin Conway Institute of Biomolecular and Biomedical Sciences, University College Dublin, Dublin, Ireland, School of Biological Sciences, University of Southampton, Southampton, United Kingdom
⨯
Norman E. Davey,

Affiliation University College Dublin Complex and Adaptive Systems Laboratory, University College Dublin Conway Institute of Biomolecular and Biomedical Sciences, University College Dublin, Dublin, Ireland
⨯
Denis C. Shields

Affiliation University College Dublin Complex and Adaptive Systems Laboratory, University College Dublin Conway Institute of Biomolecular and Biomedical Sciences, University College Dublin, Dublin, Ireland
⨯

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Sequence motif analysis
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BLAST algorithm
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Protein sequencing
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Phage display
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Endoplasmic reticulum
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Human genomics
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Molecular evolution
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Algorithms
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