Supplement 9: Transcripts with significantly higher expression in bluegill sneaker males compared to satellite males, but not differentially expressed between parental males and sneaker males. CPM = Counts per million. FDR = False discovery rate. *denotes transcripts without significant blastx hits from the custom fish database (see methods) at E values < 1E-10.						
Query ID	log2 Fold Change	log CPM	PValue	FDR pvalue	Ensembl Gene ID	Name
c48671_g6_i2	0.459531798	3.880475132	0.005753577	0.04498208	ENSLOCG00000016026 	 Uncharacterized protein {ECO:0000313|Ensembl:ENSLOCP00000019740}  
c43530_g6_i4	0.521781712	3.926161417	0.002697741	0.029402446	ENSONIG00000017484 	 PC4 and SFRS1 interacting protein 1 
c48244_g1_i7	0.53343834	5.437039266	0.006401965	0.048176299	ENSONIG00000008928 	 SH3 and PX domains 2Aa 
c31552_g1_i1	0.539436432	5.931314232	0.005690609	0.044704812	ENSONIG00000003981 	 neurofilament, light polypeptide a 
c44234_g6_i1	0.546251136	3.380623407	0.006650776	0.049267878	ENSPFOG00000008106 	 Rho guanine nucleotide exchange factor (GEF) 25 
c48182_g3_i12	0.553491894	4.701592749	0.001089736	0.017135594	ENSTRUG00000007868 	 protein tyrosine phosphatase, receptor-type, F interacting protein, binding protein 2b 
c47504_g1_i5	0.559139184	3.475014736	0.004125007	0.037522225	ENSONIG00000009529 	 suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) 
c36490_g1_i1	0.642281478	3.513110865	0.006186574	0.046981529	ENSDARG00000008720 	 LIM domain only 3 
c44456_g6_i5	0.577872761	3.616683203	0.001262098	0.01873103	ENSONIG00000002027 	 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing 
c43960_g1_i3	0.580373944	3.992155557	0.003489404	0.034101482	ENSTRUG00000001297 	 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1a 
c42761_g2_i1	0.600386162	4.502783811	0.004900796	0.041292183	ENSGACG00000015314 	 formin 2b 
c45901_g5_i1	0.601626743	3.626493772	0.004594943	0.039714625	ENSGACG00000016394 	 alpha-tropomyosin 
c46361_g2_i2	0.602494569	3.698559162	0.003802821	0.035873937	ENSLOCG00000018039 	 mab-21-like 1 
c43301_g5_i1	0.607958215	3.501241199	0.002545296	0.028356353	ENSONIG00000015828 	 RAB33A, member RAS oncogene family 
c48352_g8_i9	0.59085468	4.292841523	0.004736634	0.040453866	ENSGACG00000006240 	 DIP2 disco-interacting protein 2 homolog A 
c47507_g1_i7	0.626426636	3.397489637	0.002778495	0.029906821	ENSONIG00000008724 	 clustered mitochondria (cluA/CLU1) homolog b 
c48369_g4_i1	0.63575521	3.700594932	0.004874102	0.041181502	ENSORLG00000001704 	 B-cell CLL/lymphoma 11Aa 
c44139_g3_i5	0.63685817	3.745651315	0.003735302	0.035456081	ENSONIG00000017441 	 topoisomerase (DNA) I 
c47507_g1_i1	0.637266329	3.273375649	0.00596029	0.045809981	ENSGACG00000020485 	 clustered mitochondria (cluA/CLU1) homolog b 
c36490_g1_i1	0.642281478	3.513110865	0.006186574	0.046981529	ENSDARG00000008720 	 LIM domain only 3 
c45774_g3_i1	0.652112291	4.43912253	0.006273493	0.047325568	ENSONIG00000010029 	 nuclear receptor subfamily 3, group C, member 2 
c47792_g1_i1	0.666616274	4.378235888	0.004507522	0.039189775	ENSPFOG00000005603 	 zgc:109889 
c48539_g3_i8	0.666839148	3.396786202	0.002459419	0.027772513	ENSAMXG00000014572 	 Uncharacterized protein {ECO:0000313|Ensembl:ENSAMXP00000015008}  
c48830_g2_i10	0.669290173	3.755220239	0.005279107	0.04299892	ENSONIG00000013332 	 spectrin repeat containing, nuclear envelope 1a 
c45431_g4_i1	0.682509411	3.63354761	0.002408762	0.027408721	ENSTNIG00000016810 	 Uncharacterized protein {ECO:0000313|Ensembl:ENSTNIP00000019924}  
c38956_g1_i1	0.695814058	4.715892038	0.002949804	0.0307282	ENSONIG00000011038 	 neurofilament, light polypeptide b 
c47009_g8_i2	0.723482569	2.983378649	0.00538828	0.04350858		no blastx hit*
c43448_g6_i1	0.730798251	3.585961646	0.000674968	0.012937267	ENSTRUG00000007236 	 N-myristoyltransferase 2 
c41838_g2_i3	0.733061101	4.870558626	0.000368953	0.009305177	ENSPFOG00000007247 	 neurofilament, medium polypeptide a 
c47047_g6_i1	0.741787937	3.896022	0.004538246	0.039385126	ENSONIG00000004019 	 Uncharacterized protein {ECO:0000313|Ensembl:ENSONIP00000005066}  
c47758_g1_i1	0.783208469	3.482110181	0.001908905	0.023834643	ENSPFOG00000011899 	 WW domain binding protein 1 
c23130_g1_i1	1.216257238	3.913581259	7.62E-05	0.003856559	ENSONIG00000019203 	 peripherin 
c43297_g2_i1	1.567813058	3.221664104	0.002455694	0.027758697	ENSDARG00000089082 	 Uncharacterized protein  
c47942_g9_i1	10.64664648	3.249636911	0.000436195	0.010050326	ENSONIG00000007074 	 Uncharacterized protein {ECO:0000313|Ensembl:ENSONIP00000008927}