Supplemental File 1. Read alignments for 49 novel miRNAs in Table 1 and Table S4. The first column on the left indicates the number of reads in the sequencing data; the second column indicates the length of the read; the third column indicates how many loci in the MHV68 or mouse genome (version mm9) the read can be mapped to. >mghv-mir-M1-8-AS AAACTCACTTAGGGTTGGTCAGATCTACTTGATCTCCTGACCAAACCCCCAGTGAGTGC ..(((((((..((((((((((((((.....)))...)))))).)))))..))))))).. (-28.00) AAACTCACTTAGGGTTGGTCAGA.................................... 2 23 1 .AACTCACTTAGGGTTGGTCAGA.................................... 8 22 1 ...CTCACTTAGGGTTGGTCAGA.................................... 1 20 1 .....................................TGACCAAACCCCCAGTGAGTGC 2 22 1 >mghv-mir-M1-10-AS AAAGAACCTTCCGTGTAATCACTCCAAATGCAGACAAGTGATTGCACTGAGGGTTCTTAATT .((((((((((.(((((((((((.............))))))))))).)))))))))).... (-29.02) AAAGAACCTTCCGTGTAATCACT....................................... 1 23 1 ......................................TGATTGCACTGAGGGTTCT..... 2 19 1 ......................................TGATTGCACTGAGGGTTCTTAA.. 2 22 1 ......................................TGATTGCACTGAGGGTTCTTAAT. 3 23 1 ........................................ATTGCACTGAGGGTTCTTAATT 2 22 1 >sno-miR-#1 TTTGAGGTCTATCCCGACGGGGCTTCCCTAGTAGCCAGACGTCGTTGGAAACGCCTCATACAGTAACTTGTGGTTTTACTTGACTCACAGGACTGACTGTTAGGTCTGTGGGAAGGAACTACAAGACAGCT ..((((((.(.((((((((.((((........))))...)))))..))).).))))))........((((((((((..(((..(((((((..((((...))))..))))))))))))))))))))...... (-49.70) TTTGAGGTCTATCCCGACGGGGC............................................................................................................ 1 23 1 ...............................................................TAACTTGTGGTTTTACTTGACTCAC........................................... 3 25 1 ................................................................AACTTGTGGTTTTACTTGACTCAC........................................... 1 24 1 ................................................................AACTTGTGGTTTTACTTGACTCA............................................ 1 23 1 ................................................................AACTTGTGGTTTTACTTGACT.............................................. 1 21 1 .................................................................ACTTGTGGTTTTACTTGACTCAC........................................... 1 23 1 ..................................................................CTTGTGGTTTTACTTGACTCACAGG........................................ 4 25 1 ...................................................................TTGTGGTTTTACTTGACTCACAGG........................................ 2 24 1 ..........................................................................TTTACTTGACTCACAGG........................................ 1 17 2 .........................................................................................GGACTGACTGTTAGGTCTG....................... 1 19 1 ..........................................................................................GACTGACTGTTAGGTCTGTGGGAAGG............... 1 26 1 ..........................................................................................GACTGACTGTTAGGTCTGTGGGAAG................ 1 25 1 ...........................................................................................ACTGACTGTTAGGTCTGTGGGAAGGA.............. 1 26 1 ................................................................................................CTGTTAGGTCTGTGGGAAGGAACTACA........ 1 27 1 ...................................................................................................TTAGGTCTGTGGGAAGGAACTACAA....... 1 25 1 ........................................................................................................TCTGTGGGAAGGAACTACAAGA..... 1 22 1 ........................................................................................................TCTGTGGGAAGGAACTACAAGACAGCT 2 27 1 .........................................................................................................CTGTGGGAAGGAACTACAAGACAGCT 2 26 1 ..........................................................................................................TGTGGGAAGGAACTACAAGACA... 276 22 1 ..........................................................................................................TGTGGGAAGGAACTACAAG...... 2 19 1 ..........................................................................................................TGTGGGAAGGAACTACAAGACAGCT 3 25 1 ..........................................................................................................TGTGGGAAGGAACTACAAGAC.... 57 21 1 ..........................................................................................................TGTGGGAAGGAACTACAAGACAGC. 7 24 1 ..........................................................................................................TGTGGGAAGGAACTACAAGA..... 8 20 1 ..........................................................................................................TGTGGGAAGGAACTACAAGACAG.. 99 23 1 ...........................................................................................................GTGGGAAGGAACTACAAGACAGCT 15 24 1 ...........................................................................................................GTGGGAAGGAACTACAAGACAGC. 1 23 1 ...........................................................................................................GTGGGAAGGAACTACAAGACAG.. 4 22 1 ............................................................................................................TGGGAAGGAACTACAAGACAGC. 15 22 1 ............................................................................................................TGGGAAGGAACTACAAGACAGCT 24 23 1 ............................................................................................................TGGGAAGGAACTACAAGAC.... 2 19 1 ............................................................................................................TGGGAAGGAACTACAAGACAG.. 55 21 1 ............................................................................................................TGGGAAGGAACTACAAGACA... 8 20 1 .............................................................................................................GGGAAGGAACTACAAGACAGCT 13 22 1 ..............................................................................................................GGAAGGAACTACAAGACAGCT 8 21 1 ...............................................................................................................GAAGGAACTACAAGACAGCT 25 20 1 ................................................................................................................AAGGAACTACAAGACAGCT 24 19 1 .................................................................................................................AGGAACTACAAGACAGCT 7 18 1 ..................................................................................................................GGAACTACAAGACAGCT 10 17 1 >sno-miR-#2 ACGCGCTGCCTTTGAGCCCCCGGCCCACCTTCTCGTGGTGCCGGGGGTTAAGCTGCGGCGCCATAACACTCTGCTAGCGCATAACTGGGGCCGCCTGCCCTTCGCGGGCGGCCCTTTTAACCGCTAGCTACAGGC ..(((((((.....((((((((((((((......)))).)))))))))).....))))))).......((..(((((((..(((..((((((((((((.....)))))))))))).)))..)))))))...)).. (-83.00) ACGCGCTGCCTTTGAGCCCCCGGCCCACCC......................................................................................................... 1 30 1 ACGCGCTGCCTTTGAGCCCCCGGCCCAC........................................................................................................... 1 28 1 ACGCGCTGCCTTTGAGCCCCCGG................................................................................................................ 1 23 1 ACGCGCTGCCTTTGAGCC..................................................................................................................... 1 18 1 ACGCGCTGCCTTTGAGCCCCCGGCCCA............................................................................................................ 2 27 1 ACGCGCTGCCTTTGAGCCCCCGGC............................................................................................................... 3 24 1 .CGCGCTGCCTTTGAGCCCCCGGCCCACC.......................................................................................................... 1 28 1 .CGCGCTGCCTTTGAGCCCCCGG................................................................................................................ 2 22 1 ........CCTTTGAGCCCCCGGCCCACC.......................................................................................................... 1 21 1 .....................................................TGCGGCGCCATAACACTCTGCTAGCG........................................................ 1 26 1 .....................................................................TCTGCTAGCGCATAACTGGGGCCGC......................................... 1 25 1 .....................................................................TCTGCTAGCGCATAACTGGGGCC........................................... 2 23 1 .....................................................................TCTGCTAGCGCATAACTGGGG............................................. 2 21 1 .....................................................................TCTGCTAGCGCATAACTGGGGCCG.......................................... 4 24 1 .....................................................................TCTGCTAGCGCATAACTGGGGC............................................ 8 22 1 ......................................................................CTGCTAGCGCATAACTGGGGCCG.......................................... 1 23 1 ......................................................................CTGCTAGCGCATAACTGGGGCC........................................... 1 22 1 ......................................................................CTGCTAGCGCATAACTGGGGC............................................ 4 21 1 ..............................................................................................................GCCCTTTTAACCGCTAGCTACAGGC 1 25 1 ...............................................................................................................CCCTTTTAACCGCTAGCTACAGGC 2 24 1 ...................................................................................................................TTTAACCGCTAGCTACAGGC 2 20 1 ....................................................................................................................TTAACCGCTAGCTACAGGC 1 19 1 .....................................................................................................................TAACCGCTAGCTACAGGC 2 18 1 ......................................................................................................................AACCGCTAGCTACAGGC 11 17 1 >sno-miR-#3 GACCTCTTGGGATCGCGTCTGGAGAGTAGCTAGTATTCTTCCAGCTTCGGAAGCAAGAGGGAGAGCAAGCCTAGCAGAGGTACCCATTCCATTCCCAGTTTGCTCGGTAGCTGGTGATTGGAAGACACTCTGCAACATTA ...(((((.((((...)))).)))))..(((.((..((((((..((((....).))).)))))))).)))...((((((((.....(((((.((((((((........)))))).)).))))).)).))))))....... (-50.40) GACCTCTTGGGATCGCGTCTGG...................................................................................................................... 10 22 1 GACCTCTTGGGATCGCGTCTGGAGAGTA................................................................................................................ 1 28 1 GACCTCTTGGGATCGCGTCTGGAG.................................................................................................................... 1 24 1 GACCTCTTGGGATCGCG........................................................................................................................... 2 17 1 GACCTCTTGGGATCGCGTCTGGAGAGTAG............................................................................................................... 2 29 1 GACCTCTTGGGATCGCGTCTGGAGAGT................................................................................................................. 2 27 1 GACCTCTTGGGATCGCGTCTGGA..................................................................................................................... 3 23 1 GACCTCTTGGGATCGCGTCTGGAGAG.................................................................................................................. 5 26 1 GACCTCTTGGGATCGCGTCTGGAGA................................................................................................................... 5 25 1 .ACCTCTTGGGATCGCGTCTG....................................................................................................................... 1 20 1 .ACCTCTTGGGATCGCGTCTGGAGA................................................................................................................... 2 24 1 ..CCTCTTGGGATCGCGTCTGGAGAG.................................................................................................................. 1 24 1 .............................................TTCGGAAGCAAGAGGGAGAGCAA........................................................................ 1 23 1 .....................................................CAAGAGGGAGAGCAAGCCTAGCAGAGG............................................................ 1 27 1 .......................................................................TAGCAGAGGTACCCATTCCATTC.............................................. 1 23 1 ............................................................................................TCCCAGTTTGCTCGGTAG.............................. 1 18 1 .......................................................................................................TCGGTAGCTGGTGATTGGAAGACA............. 1 24 2 ..........................................................................................................GTAGCTGGTGATTGGAAGACACTCTGCAA..... 1 29 2 ...............................................................................................................TGGTGATTGGAAGACACTCTGCAACA... 1 26 2 ...............................................................................................................TGGTGATTGGAAGACACTCTGCAA..... 1 24 3 ...............................................................................................................TGGTGATTGGAAGACACTCTG........ 1 21 3 ...............................................................................................................TGGTGATTGGAAGACACTCTGCAAC.... 2 25 2 ...............................................................................................................TGGTGATTGGAAGACACTCTGCA...... 2 23 3 ...............................................................................................................TGGTGATTGGAAGACACTCTGC....... 3 22 3 .................................................................................................................GTGATTGGAAGACACTCTGCAACAT.. 1 25 2 .................................................................................................................GTGATTGGAAGACACTCTGCA...... 15 21 3 .................................................................................................................GTGATTGGAAGACACTCTGCAA..... 31 22 3 .................................................................................................................GTGATTGGAAGACACTCTGC....... 3 20 3 .................................................................................................................GTGATTGGAAGACACTCTGCAAC.... 48 23 2 .................................................................................................................GTGATTGGAAGACACTCTGCAACA... 6 24 2 ..................................................................................................................TGATTGGAAGACACTCTGC....... 1 19 3 ..................................................................................................................TGATTGGAAGACACTCTGCAACA... 221 23 2 ..................................................................................................................TGATTGGAAGACACTCTGCAACATTA 2 26 1 ..................................................................................................................TGATTGGAAGACACTCTGCAACATT. 2 25 1 ..................................................................................................................TGATTGGAAGACACTCTGCAA..... 255 21 3 ..................................................................................................................TGATTGGAAGACACTCTGCAACAT.. 5 24 2 ..................................................................................................................TGATTGGAAGACACTCTG........ 5 18 3 ..................................................................................................................TGATTGGAAGACACTCTGCA...... 58 20 3 ..................................................................................................................TGATTGGAAGACACTCTGCAAC.... 682 22 2 ...................................................................................................................GATTGGAAGACACTCTGCAA..... 2 20 3 ...................................................................................................................GATTGGAAGACACTCTGCAACATTA 5 25 1 ...................................................................................................................GATTGGAAGACACTCTGCAAC.... 5 21 2 ...................................................................................................................GATTGGAAGACACTCTGCA...... 5 19 3 ....................................................................................................................ATTGGAAGACACTCTGCAACATTA 27 24 1 .....................................................................................................................TTGGAAGACACTCTGCAACAT.. 1 21 2 .....................................................................................................................TTGGAAGACACTCTGCAACATTA 27 23 1 ......................................................................................................................TGGAAGACACTCTGCAACATTA 11 22 1 ......................................................................................................................TGGAAGACACTCTGCAACATT. 1 21 1 .......................................................................................................................GGAAGACACTCTGCAACATTA 3 21 1 ........................................................................................................................GAAGACACTCTGCAACATTA 9 20 1 .........................................................................................................................AAGACACTCTGCAACATTA 1 19 1 ..........................................................................................................................AGACACTCTGCAACATTA 12 18 1 ...........................................................................................................................GACACTCTGCAACATTA 16 17 1 >sno-miR-#4 TTCCACAGCTACTGGTCTACAGCTGTCTTTATGGTAGCAGTTGTAGCATTCCTCTGTGGGAAAGAAACTGTTACACAATTTAATGCCTCTTTCTTAGCCACACAGGAGGAGGATTATGTGTGACAGACACAA ((((((((......(.(((((((((.((.......))))))))))))......))))))))......((((((((((...((((.(((((((((.........)))))))))))))))))))))))...... (-50.20) ..................................TAGCAGTTGTAGCATTCCTCTG............................................................................ 1 22 2 ..........................................................................................................AGGAGGATTATGTGTGACAGACA... 1 23 1 ..........................................................................................................AGGAGGATTATGTGTGACAGA..... 3 21 1 ...........................................................................................................GGAGGATTATGTGTGACAGACACA. 1 24 1 ...........................................................................................................GGAGGATTATGTGTGACAGACAC.. 1 23 1 ...........................................................................................................GGAGGATTATGTGTGACAGA..... 18 20 1 ...........................................................................................................GGAGGATTATGTGTGACAG...... 2 19 1 ...........................................................................................................GGAGGATTATGTGTGACAGAC.... 36 21 1 ...........................................................................................................GGAGGATTATGTGTGACAGACA... 74 22 1 ............................................................................................................GAGGATTATGTGTGACAGACA... 12 21 1 ............................................................................................................GAGGATTATGTGTGACAGACAC.. 1 22 1 ............................................................................................................GAGGATTATGTGTGACAGAC.... 1 20 1 .................................................................................................................TTATGTGTGACAGACACAA 1 19 1 >sno-miR-#5 TGCAGCTGTGTCAAATTCAGTGCCTCTCCTAATGATGGCAAGCACTGGCCCAGAAGGCTGCCATAGAAACTCTGTGACTCCTGAGCTCTGTTCCCCATGCTAGGTTCAGGGATAAATGGAGTCACAGACATCA .((((((...((....(((((((....((.......))...)))))))....)).))))))....((...(((((((((((....(((((..((........))..)))))......)))))))))))..)). (-50.70) ..........................................................................TGACTCCTGAGCTCTGTTCC....................................... 1 20 5 ..........................................................................TGACTCCTGAGCTCTGTTC........................................ 1 19 5 ......................................................................................TCTGTTCCCCATGCTAGGTTCAGGG...................... 1 25 2 ..................................................................................................GCTAGGTTCAGGGATAAATGGAG............ 1 23 2 ........................................................................................................TTCAGGGATAAATGGAGTCACAGAC.... 1 25 3 ........................................................................................................TTCAGGGATAAATGGAGTCACA....... 1 22 3 ........................................................................................................TTCAGGGATAAATGGAGTCA......... 1 20 3 ........................................................................................................TTCAGGGATAAATGGAGTCACAG...... 17 23 3 ........................................................................................................TTCAGGGATAAATGGAGTCACAGA..... 49 24 3 .........................................................................................................TCAGGGATAAATGGAGTCACAGA..... 1 23 3 .........................................................................................................TCAGGGATAAATGGAGTCACAG...... 4 22 3 ..........................................................................................................CAGGGATAAATGGAGTCACAGA..... 1 22 3 ...........................................................................................................AGGGATAAATGGAGTCACAGAC.... 1 22 5 ....................................................................................................................TGGAGTCACAGACATCA 1 17 5 >sno-miR-#6 AGGTCATTCCAAAGAGGGCTTTTTGGGCTATAAAACCCACAGCTCTTAACGCTGTGACCAAAGATTGATGTTCTTCACAGAGAAAATCCTGCACTGTTTTGATAGTGCTGTGTTTTTCTGAGAAGATAACATA .((((((......(((((((...((((........)))).)))))))......))))))........(((((((((.((((((((.....(((((((....)))))))....)))))))).)))))..)))). (-47.70) ......................................................................TTCTTCACAGAGAAAATCCTGCA........................................ 2 23 6 ......................................................................TTCTTCACAGAGAAAATCCTGC......................................... 2 22 6 .......................................................................TCTTCACAGAGAAAATCCTGCACTGT.................................... 1 26 4 ...........................................................................................................CTGTGTTTTTCTGAGAAGATAAC... 14 23 4 ...........................................................................................................CTGTGTTTTTCTGAGAAGATAA.... 3 22 4 ...........................................................................................................CTGTGTTTTTCTGAGAAGATA..... 3 21 4 ............................................................................................................TGTGTTTTTCTGAGAAGATAAC... 13 22 4 ............................................................................................................TGTGTTTTTCTGAGAAGATA..... 3 20 4 ............................................................................................................TGTGTTTTTCTGAGAAGATAA.... 5 21 4 >sno-miR-#7 AGGCATGTTTCCAAGGGCTGTGGCTGCCTGTAGCCATGGGATCTCCAACTGCATGCCAGAGTAATGGAGAGACTTTGACAGCTCAGGTCAGCACAGTGCCTGCAGCTGCCACTCATCTTTCCTATATAT .(((((((.....(((.(((((((((....)))))))))..)))......)))))))........(((((((...((.(((((((((.((......)))))).))))).))....)))))))....... (-48.80) AGGCATGTTTCCAAGGGCTGTGGC......................................................................................................... 11 24 1 AGGCATGTTTCCAAGGGCTGTG........................................................................................................... 13 22 1 AGGCATGTTTCCAAGGGCTGTGGCTGCCC.................................................................................................... 1 29 1 AGGCATGTTTCCAAGGGCTGTGGCTGC...................................................................................................... 17 27 1 AGGCATGTTTCCAAGGGCTGTGG.......................................................................................................... 22 23 1 AGGCATGTTTCCAAGGGCTGTGGCTGCCTG................................................................................................... 2 30 1 AGGCATGTTTCCAAGGGCTGT............................................................................................................ 2 21 1 AGGCATGTTTCCAAGGGCTGTGGCT........................................................................................................ 31 25 1 AGGCATGTTTCCAAGGGC............................................................................................................... 3 18 1 AGGCATGTTTCCAAGGGCTG............................................................................................................. 4 20 1 AGGCATGTTTCCAAGGGCTGTGGCTG....................................................................................................... 61 26 1 AGGCATGTTTCCAAGGGCTGTGGCTGCC..................................................................................................... 6 28 1 .GGCATGTTTCCAAGGGCTGTGGCTG....................................................................................................... 1 25 1 .GGCATGTTTCCAAGGGCTGTGG.......................................................................................................... 1 22 1 .GGCATGTTTCCAAGGGCTGT............................................................................................................ 1 20 1 ....................TGGCTGCCTGTAGCCATGGG......................................................................................... 1 20 1 ..............................................................AATGGAGAGACTTTGACAGCT.............................................. 14 21 1 ..............................................................AATGGAGAGACTTTGACAGC............................................... 1 20 1 ..............................................................AATGGAGAGACTTTGACAGCTCAGG.......................................... 1 25 1 ..............................................................AATGGAGAGACTTTGACAG................................................ 1 19 3 ..............................................................AATGGAGAGACTTTGACAGCTC............................................. 19 22 1 ..............................................................AATGGAGAGACTTTGACAGCTCA............................................ 2 23 1 ...............................................................ATGGAGAGACTTTGACAGCTCA............................................ 135 22 1 ...............................................................ATGGAGAGACTTTGACAGC............................................... 13 19 1 ...............................................................ATGGAGAGACTTTGACAGCTCAGGT......................................... 1 25 1 ...............................................................ATGGAGAGACTTTGACAGCT.............................................. 178 20 1 ...............................................................ATGGAGAGACTTTGACAGCTC............................................. 201 21 1 ...............................................................ATGGAGAGACTTTGACA................................................. 2 17 3 ...............................................................ATGGAGAGACTTTGACAG................................................ 3 18 3 ...............................................................ATGGAGAGACTTTGACAGCTCAG........................................... 4 23 1 ................................................................TGGAGAGACTTTGACAGCTC............................................. 1 20 1 ................................................................TGGAGAGACTTTGACAGCT.............................................. 1 19 1 >sno-miR-#8 TTGGCCCTGAATCAAGGCTACAGTTTACTGAAGCTGTTGGTTTCAAGCAGGAGCCTAAAGAAATATCTTTCTATGGTCTGTTGGCCATTGCAGAAATTTGTAAGTCTAATGGCCAATTCATTAGAAAGAAACATCT ..(((((((((((((((((.(((....))).)))).)))))).....)))).)))..........(((((((((((...((((((((((((((....)))))......)))))))))))).))))))))....... (-43.50) TTGGCCCTGAATCAAGGC...................................................................................................................... 2 18 2 ...............................................................TATCTTTCTATGGTCTGTTGGCC.................................................. 1 23 2 ...............................................................TATCTTTCTATGGTCTGTTGG.................................................... 2 21 2 ...............................................................TATCTTTCTATGGTCTGTTGGC................................................... 6 22 2 ................................................................ATCTTTCTATGGTCTGTTGGCCA................................................. 1 23 2 ................................................................ATCTTTCTATGGTCTGTTGGCCAT................................................ 1 24 2 ................................................................ATCTTTCTATGGTCTGTTGGCCATTG.............................................. 1 26 2 ................................................................ATCTTTCTATGGTCTGTTGG.................................................... 1 20 2 ................................................................ATCTTTCTATGGTCTGTTGGC................................................... 27 21 2 ................................................................ATCTTTCTATGGTCTGTTGGCC.................................................. 2 22 2 .................................................................TCTTTCTATGGTCTGTTGGC................................................... 1 20 3 .................................................................................................................CAATTCATTAGAAAGAAACATCT 1 23 5 .....................................................................................................................TCATTAGAAAGAAACATCT 2 19 6 ......................................................................................................................CATTAGAAAGAAACATCT 1 18 6 .......................................................................................................................ATTAGAAAGAAACATCT 11 17 8 >sno-miR-#9 AGCCTCATTGTACATAAGAATGGGCATTGTTGGTCATTGTCCAGAACTGGTCGATGTGGCTAAATTGAGATACAGGTCATGCTTCCATCACAGCAGATACATTACAGTGGTGACAATGAGACCTGTAACATTT ((((.(((((.((...((..((((((.((.....)).))))))...)).))))))).)))).......(.((((((((.((((........)))).........((.((....)).)).)))))))).).... (-43.10) ((((.(((((.((.......((((((.((.....)).))))))......))))))).)))).........((((((((....((.((((((...............))))))..))...))))))))...... (-37.10) AGCCTCATTGTACATAAGAATGG.............................................................................................................. 1 23 1 .....CATTGTACATAAGAATGGGC............................................................................................................ 1 20 1 ..........................TTGTTGGTCATTGTCCAGAACTG.................................................................................... 1 23 1 .....................................................................ATACAGGTCATGCTTCCATCACAGCAGAT................................... 1 29 1 .....................................................................ATACAGGTCATGCTTCCATCACA......................................... 2 23 1 .....................................................................ATACAGGTCATGCTTCCATCAC.......................................... 2 22 1 .....................................................................ATACAGGTCATGCTTCCATCA........................................... 3 21 1 ..........................................................................................................GTGGTGACAATGAGACCTGTAACATTT 3 27 1 ...........................................................................................................TGGTGACAATGAGACCTGTAAC.... 10 22 1 ............................................................................................................GGTGACAATGAGACCTGTAACAT.. 1 23 1 ............................................................................................................GGTGACAATGAGACCTGTAACATT. 1 24 1 ............................................................................................................GGTGACAATGAGACCTGTAAC.... 3 21 1 ............................................................................................................GGTGACAATGAGACCTGTAACA... 7 22 1 ..............................................................................................................TGACAATGAGACCTGTAAC.... 1 19 1 ..............................................................................................................TGACAATGAGACCTGTAA..... 1 18 1 ..............................................................................................................TGACAATGAGACCTGTAACATT. 4 22 1 ..............................................................................................................TGACAATGAGACCTGTAACATTT 4 23 1 ..................................................................................................................AATGAGACCTGTAACATTT 1 19 2 ...................................................................................................................ATGAGACCTGTAACATTT 1 18 2 ....................................................................................................................TGAGACCTGTAACATTT 4 17 3 >tRNA-miR-#1 CACTTGTAGTCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACGATTGTGGGTTTTTGT .(((..(((((((((.((.((((((..(((.(((((.......))))).((((...))))......)))..))))..)))).)))))))))..)))...... (-29.88) .....................................................................CGAATCCTGCCGACTACGATTGTG......... 2 24 1 ..........................................................................CCTGCCGACTACGATTGTGG........ 1 20 1 ...........................................................................CTGCCGACTACGATTGTGG........ 1 19 1 ............................................................................TGCCGACTACGATTGTGGGT...... 2 20 1 ............................................................................TGCCGACTACGATTGTGGGTT..... 2 21 1 ............................................................................TGCCGACTACGATTGTGGG....... 3 19 1 ..................................................................................CTACGATTGTGGGTTTT... 1 17 1 >miRtron-#1 GTTATGTGACAGGGTGGGTGGGGCAGCCCTGTAACTTGTGGAGCTGACTGCCTCCTGCCTGCCCTGCAG ......((.(((((..((((((((((.(..((..(....)..)).).))))).)).)))..))))))). (-31.60) ......TGACAGGGTGGGTGGGGCAGCC......................................... 1 22 1 .........CAGGGTGGGTGGGGCAGCCCTG...................................... 2 22 1 ............................................TGACTGCCTCCTGCCTGCCCTG... 1 22 1 ............................................TGACTGCCTCCTGCCTGCCCTGC.. 3 23 1 ............................................TGACTGCCTCCTGCCTGCCCTGCA. 4 24 1 >miRtron-#2 AAGGCAGGGAGGGATAAAGACCAGTCACTATGGAAACTCATCTTTATCTCTCCCCAG ......((((((((((((((..(((..(....)..)))..))))))))))))))... (-23.10) ....CAGGGAGGGATAAAGACCAGTC............................... 2 22 2 ....CAGGGAGGGATAAAGACCAGT................................ 3 21 2 .....AGGGAGGGATAAAGACC................................... 1 17 2 ...................................ACTCATCTTTATCTCTCCCCAG 2 22 2 ....................................CTCATCTTTATCTCTCCCCAG 2 21 2 >miRtron-#3 GGGCAGGATGAGAAGAGTTTGGCTGGAAGCCCTGCTCAGCCAACCACCTCTCTCCTCAG ..(.((((.((((.(.(.(((((((..(((...)))))))))).).).))))))))).. (-21.10) ..GCAGGATGAGAAGAGTTTGGCTGG................................. 1 24 1 ..GCAGGATGAGAAGAGTTTGGCTG.................................. 2 23 1 ...CAGGATGAGAAGAGTTTGGCTGGA................................ 10 24 1 ...CAGGATGAGAAGAGTTTGG..................................... 10 19 1 ...CAGGATGAGAAGAGTTTGGC.................................... 1 20 1 ...CAGGATGAGAAGAGTTTGGCTGGAAG.............................. 1 26 1 ...CAGGATGAGAAGAGTTTGGCTGGAA............................... 6 25 1 ...CAGGATGAGAAGAGTTTGGCTG.................................. 6 22 1 ...CAGGATGAGAAGAGTTTGGCTGG................................. 71 23 1 ...CAGGATGAGAAGAGTTTGGCT................................... 8 21 1 ....AGGATGAGAAGAGTTTGGCTGG................................. 14 22 1 ....AGGATGAGAAGAGTTTGGCTGGAA............................... 1 24 1 ....AGGATGAGAAGAGTTTGGCT................................... 1 20 1 ....AGGATGAGAAGAGTTTGGCTGGA................................ 3 23 1 >miRtron-#4 CTTTCTGGGGGAATTGAAAGACTATGACTTAACAATTAACTGATAGCCTTTTCCTCCCCAACAG .......(((((...(((((.((((.(.(((.....))).).)))).)))))..)))))..... (-15.20) ..TTCTGGGGGAATTGAAAGACTATGA..................................... 1 25 1 ..TTCTGGGGGAATTGAAAGACTATG...................................... 1 24 1 ...TCTGGGGGAATTGAAAGACTATGACT................................... 1 26 1 ...TCTGGGGGAATTGAAAGACTATG...................................... 2 23 1 ...TCTGGGGGAATTGAAAGACTATGA..................................... 9 24 1 ....CTGGGGGAATTGAAAGACTATG...................................... 3 22 1 ....CTGGGGGAATTGAAAGACTATGA..................................... 5 23 1 .....TGGGGGAATTGAAAGACTATGA..................................... 29 22 1 >miRtron-#5 GCCAGGGAAGTTGATTGTGTGAAGGGAGCAGGACTCCTGACACAGCCATTCTCTGAGCAG (((((((((..((..(((((...(((((.....))))).)))))..))))))))).)).. (-24.60) .CCAGGGAAGTTGATTGTGTGAAGGG.................................. 1 25 1 .CCAGGGAAGTTGATTGTGTGAAG.................................... 1 23 1 ................................ACTCCTGACACAGCCATTCTCTGAGCAG 2 28 1 ...................................CCTGACACAGCCATTCTCTGAGCAG 1 25 1 .....................................TGACACAGCCATTCTCTGAGCAG 2 23 1 .....................................TGACACAGCCATTCTCTGAGCA. 3 22 1 >miRtron-#6 GTGAGTGGAGACTCGGTAGAGGTAGAGGTGGGAGTCCTGCCCTTGTCGGTCCTCATGGCCTCTCCTGTTCTCCATCTAG ....(((((((..(((.((((((....(((((.(.((.((....)).)).)))))).)))))).))).))))))).... (-29.90) GTGAGTGGAGACTCGGTAGAGGTAG...................................................... 2 25 1 .TGAGTGGAGACTCGGTAGAGGTAG...................................................... 7 24 1 ..GAGTGGAGACTCGGTAGAGGTAG...................................................... 1 23 1 >miRtron-#7 GCTTCCTTGGACAGATGTGGGGCAGACTGACTTTCCTTCATGTCTGCTTTTCCCCTTGTGTCCCAG .....((.(((((.(.(.((((((((((((.......))).))))))....)))).).))))).)) (-22.40) ......TTGGACAGATGTGGGGCAGACT...................................... 3 22 1 ......TTGGACAGATGTGGGGCAGA........................................ 6 20 1 ......TTGGACAGATGTGGGGCAG......................................... 7 19 1 ..........................................TCTGCTTTTCCCCTTGTGTCCC.. 2 22 1 >miRtron-#8 CCTTCTTGGGGTGGACAGCCTGACTCATGAGTGGGCTGAGCCTGTCTCCTCCACCCCACAG ......(((((((((((((((.(((....)))))))))...........)))))))))... (-26.80) ...TCTTGGGGTGGACAGCCTGA...................................... 1 20 1 ...TCTTGGGGTGGACAGCCTGAC..................................... 2 21 1 ...TCTTGGGGTGGACAGCCTGACT.................................... 4 22 1 .....TTGGGGTGGACAGCCTGACTC................................... 1 21 1 .....TTGGGGTGGACAGCCTGACT.................................... 2 20 1 >miRtron-#9 AGTCTCCAGGAGTCTGAGGGGCAGGGTCGTCTCCAGCATCTTGGGCTTGGCCTAACCTGCCTCCATTCTCTTGGGCAGC ....((((((((..((.((((((((((((..(((((....)))))..))))....))))))))))..)))))))).... (-35.30) ..TCTCCAGGAGTCTGAGGGGCAGG...................................................... 4 23 1 ..TCTCCAGGAGTCTGAGGGGCAG....................................................... 6 22 1 ...CTCCAGGAGTCTGAGGGGCAGG...................................................... 1 22 1 ...CTCCAGGAGTCTGAGGGGCAG....................................................... 1 21 1 ....TCCAGGAGTCTGAGGGG.......................................................... 3 17 3 .........................................................TGCCTCCATTCTCTTGGGCAG. 4 21 1 >miRtron-#10 TAGTGGACCAGCAGGAGGGGTGACCCGGATGAGACACCCTCATCCTGCAGCTCCACTGTTGTCCCCACAG ..((((..((((((..(((((...(.(((((((.....))))))).)..))))).))))))...)))).. (-32.20) ..GTGGACCAGCAGGAGGGGTGAC.............................................. 1 22 1 ...TGGACCAGCAGGAGGGGTGACCC............................................ 2 23 1 ...TGGACCAGCAGGAGGGGTGACC............................................. 3 22 1 ...TGGACCAGCAGGAGGGGTGAC.............................................. 4 21 1 >miRtron-#11 ACCTGGGAGACCAGTCAGGTGTTGGGCATCAAGCAAGCTCCTCTCTACTGATTTGTCTCCTCAG ..(((((((((.((((((..(..((((.........))))..)....)))))).)))))).))) (-24.60) ...TGGGAGACCAGTCAGGTGTTGGG...................................... 1 23 1 ...TGGGAGACCAGTCAGGTGTTGG....................................... 5 22 1 .........................................TCTCTACTGATTTGTCTCCTCAG 2 23 1 ..........................................CTCTACTGATTTGTCTCCTCA. 1 21 1 ............................................CTACTGATTTGTCTCCTCAG 1 20 1 >miRtron-#12 TGGAGTGGGCTGAGTGGGTCTGTGGCATCTACCCCCACAAAGCCTGCCTCAATCACACTCTGTCCACAG ....((((((.((((((((.((.((((.................)))).))))).))))).)))))).. (-25.83) ...AGTGGGCTGAGTGGGTCTGTGGC........................................... 1 23 1 ...AGTGGGCTGAGTGGGTCTGTGG............................................ 1 22 1 ....GTGGGCTGAGTGGGTCTGTGG............................................ 1 21 1 .....TGGGCTGAGTGGGTCTGTGGCA.......................................... 1 22 1 .....TGGGCTGAGTGGGTCTGTGGC........................................... 2 21 1 .....TGGGCTGAGTGGGTCTGTGG............................................ 2 20 1 ..............................................CCTCAATCACACTCTGTCCAC.. 1 21 1 ................................................TCAATCACACTCTGTCCACAG 2 21 1 >miRtron-#13 GTAAGTTCAGGGCTGGGAGCAGAGACTGGGCCTGTGCGAGGTCTCACGCCACCCACCCTGTGCTCAG ...(((.(((((.((((.((.((((((..((....))..))))))..))..))))))))).)))... (-29.50) GTAAGTTCAGGGCTGGGAGCAGAG........................................... 1 24 1 GTAAGTTCAGGGCTGGGAGCAG............................................. 1 22 1 GTAAGTTCAGGGCTGGGAGCAGAGA.......................................... 2 25 1 GTAAGTTCAGGGCTGGGAGCAGA............................................ 4 23 1 .TAAGTTCAGGGCTGGGAGCAG............................................. 1 21 1 ..AAGTTCAGGGCTGGGAGCAGAGA.......................................... 1 23 1 .....TTCAGGGCTGGGAGCAGAGAC......................................... 1 21 1 .....TTCAGGGCTGGGAGCAGAGACT........................................ 4 22 1 >miRtron-#14 GTGAGTGGGGATGGGTGACTGGGAGCTGGCCCTGCCAGGCCTTGGCTGCTCTTACATCCCTCCTCCTCCCCCAG ..(((.(((((.(((((...(((((((((((......))))..)))).)))...))))).))))))))...... (-32.10) .TGAGTGGGGATGGGTGACTGGGAGCT............................................... 1 26 1 .TGAGTGGGGATGGGTGACTGGG................................................... 1 22 1 .TGAGTGGGGATGGGTGACTGGGAG................................................. 6 24 1 .TGAGTGGGGATGGGTGACTGGGAGC................................................ 4 25 1 .....TGGGGATGGGTGACTGGGAGCT............................................... 1 22 1 >miRtron-#15 AGGGTCGGGGCTGGACAAGCAGAGACATGTGCTCATCCCTCTGCTCTCCTGGACCCCAGA .(((((.(((..(((...((((((..(((....)))..)))))))))))).))))).... (-25.50) ...GTCGGGGCTGGACAAGCAGAGA................................... 2 22 1 ....TCGGGGCTGGACAAGCAGAG.................................... 4 20 1 ....TCGGGGCTGGACAAGCAGAGA................................... 4 21 1 .......................................TCTGCTCTCCTGGACCCCAGA 1 21 1 >novel-miR-#1 TTAGGACTAGCTCAGGCTACAGAGCGAGAACCTGCTTCAAAAACACCAGACTCACTATGTAGCCCAAGCTGGCCCACTTC ...((.((((((..(((((((.((.(((...(((............))).))).)).)))))))..)))))).))..... (-29.20) .TAGGACTAGCTCAGGCTACAGAGCG...................................................... 1 25 1 ...........TCAGGCTACAGAGCGAGAACC................................................ 10 21 1 ...........TCAGGCTACAGAGCGAGAACCTGC............................................. 172 24 1 ...........TCAGGCTACAGAGCGAGAACCT............................................... 20 22 1 ...........TCAGGCTACAGAGCGAGAACCTGCT............................................ 2 25 1 ...........TCAGGCTACAGAGCGAGAACCTG.............................................. 35 23 1 ...........TCAGGCTACAGAGCGAGAAC................................................. 6 20 1 ...............................................AGACTCACTATGTAGCCCAAGC........... 1 22 1 >novel-miR-#2 GGTATGCAAGTCAAGAGTCTTTGGTTTGACATGTGACAGGCGGGAGATCAGTTGCCGCCTGCCACATGTCAAACCAAAGACTCTTGACTGGGAGGTAT ...((((.(((((((((((((((((((((((((((.(((((((.((.....)).))))))).))))))))))))))))))))))))))).....)))) (-64.80) ..................CTTTGGTTTGACATGTGACAGGC......................................................... 2 23 1 ...................TTTGGTTTGACATGTGACAGGC......................................................... 1 22 1 ...................TTTGGTTTGACATGTGACAGG.......................................................... 1 21 1 ....................TTGGTTTGACATGTGACAGGCG........................................................ 14 22 1 .....................TGGTTTGACATGTGACAGGCGG....................................................... 15 22 1 .....................TGGTTTGACATGTGACAGGCG........................................................ 1 21 1 >novel-miR-#3 GTAGTCTGGGGCTACCCTTTACACCGTGTAGTGACCTGAAACACACTATACCATGTAAAGGGTAGTTTCAGACTGTT .(((((((..(((((((((((((..((((((((..........))))))))..)))))))))))))..))))))).. (-44.80) ..........GCTACCCTTTACACCGTGTAG.............................................. 1 21 1 ..........GCTACCCTTTACACCGTGTAGTGA........................................... 1 24 1 ..........GCTACCCTTTACACCGTGTAGTG............................................ 341 23 1 >cand-miR-#1 AACUAUGAAGGCAAAUGGUAAACUGAACUGUAUUGUUCUUAGAAACAGUUUUUUUGUCAUUUGCUUCAGUC .....(((((.((((((..(((..(((((((.((.......)).))))))).)))..)))))))))))... (-21.30) .......AAGGCAAATGGTAAACTGAACT.......................................... 11 22 1 .......AAGGCAAATGGTAAACTGAAC........................................... 1 21 1 .......AAGGCAAATGGTAAACTGAACTG......................................... 50 23 1 ........AGGCAAATGGTAAACTGAACTGT........................................ 2 23 1 >cand-miR-#2 ACAAGAAUCAAAGUUGCCUGGGGCAGUGUGAGUUAUCUUGAGGCACUUGACGUAAAGUUAGCUAGUCAAGUGUGACAAGAUCUCUACAUGGCACUAUGCUGACUUUGAUCUCUUUUA ..(((((((((((((((.(((.((.(((((((..((((((..(((((((((....((....)).)))))))))..))))))))).)))).)).))).)).))))))))).))))... (-44.90) ............................TGAGTTATCTTGAGGCACTTG.................................................................... 1 21 1 ............................TGAGTTATCTTGAGGCACTTGAC.................................................................. 3 23 1 ............................TGAGTTATCTTGAGGCACTTGA................................................................... 3 22 1 .................................................................TCAAGTGTGACAAGATCTCTAC.............................. 10 22 1 .................................................................TCAAGTGTGACAAGATCTCTA............................... 1 21 1 .................................................................TCAAGTGTGACAAGATCTCTACA............................. 4 23 1 ..................................................................CAAGTGTGACAAGATCTCTAC.............................. 1 21 1 >cand-miR-#3 UUCUUACUAGCUUGCUUUCCUGGGGUUGACGCAGAGCCUUAGGAAUGCUAGGCUAGUGCUCA ....(((((((((((.(((((((((((.......))))))))))).)).))))))))).... (-29.10) ......................................TTAGGAATGCTAGGCTAGTGCT.. 13 22 1 ......................................TTAGGAATGCTAGGCTAGTGC... 2 21 1 ......................................TTAGGAATGCTAGGCTAGTG.... 2 20 1 >cand-miR-#4 GUCACUUAGCUGUUUCUGAAGUUGUUCAGCAGCUGGCUGUUUUAAAAUCCUUGCACAGCUAGUUCCUGAAUACAGUUGAAAUAGUCUAGUGUG ..((((..((((((((......(((((((.((((((((((..............)))))))))).))))))).....))))))))..)))).. (-33.84) ..................AAGTTGTTCAGCAGCTGGCTGT..................................................... 1 22 1 ...................AGTTGTTCAGCAGCTGGCTGTT.................................................... 1 22 1 ...................AGTTGTTCAGCAGCTGGCTGTTT................................................... 2 23 1 ......................................................ACAGCTAGTTCCTGAATACAGT................. 22 22 1 ......................................................ACAGCTAGTTCCTGAATACAG.................. 2 21 1 .......................................................CAGCTAGTTCCTGAATACAGT................. 4 21 1 >cand-miR-#5 AACUAGGACUUCCUGAGAGAGAGAGAGGAAGUGUCACCCAUUAUGCUUCUUCUAUCCUCUCAUGCACUCCGAAAUCC .....(((...(.((((((.((.(((((((((((........))))))))))).)))))))).)...)))....... (-25.70) .........TTCCTGAGAGAGAGAGAGGAAG.............................................. 1 22 1 .........TTCCTGAGAGAGAGAGAGGAAGT............................................. 2 23 1 ..........TCCTGAGAGAGAGAGAGGAAG.............................................. 17 21 1 ..........TCCTGAGAGAGAGAGAGGAAGTG............................................ 22 23 1 ..........TCCTGAGAGAGAGAGAGGAAGT............................................. 26 22 1 ...........CCTGAGAGAGAGAGAGGAAGTG............................................ 1 22 1 >cand-miR-#6 AUCAAGUUGAUAGGCCGGCAAUACGCACACUUAAGACUUUAGAAGCUCUCAGACUAAAGUCUUAAGGGUGUGUAUUGCAGGCCUAGCAAUGCCAGA .....((((.((((((.(((((((((((.(((((((((((((...........))))))))))))).))))))))))).)))))).))))...... (-49.30) ....................ATACGCACACTTAAGACTTTAG...................................................... 32 22 1 ....................ATACGCACACTTAAGACTTTAGA..................................................... 3 23 1 .....................TACGCACACTTAAGACTTTAG...................................................... 1 21 1 >cand-miR-#7 GGGGGAGGAGUGAGUGGUAAGCUGGUGGGAUGCUUCCAGUUCCCACCAGUUUAUAAUUCAUUCCGUUACUUU ......(((((((((.((((((((((((((.((.....)))))))))))))))).)))))))))........ (-37.30) .....AGGAGTGAGTGGTAAGCTGGTG............................................. 14 22 1 .....AGGAGTGAGTGGTAAGCTGG............................................... 4 20 1 >cand-miR-#8 CUCCCAGAUCGUGGCGACUGAACCUAUAUAUAGGACUUUGGGCGGCUCCUGGCCUCAGCUACCUCCAGGUCCUAUAUAUAGCUUGGGUCUCCAUAGC ..........((((.((((.((.(((((((((((((((.(((.((...(((....)))...)))))))))))))))))))).)).)))).))))... (-40.00) .TCCCAGATCGTGGCGACTGAAC.......................................................................... 1 22 1 ..CCCAGATCGTGGCGACTGAAC.......................................................................... 2 21 1 ......................CCTATATATAGGACTTTGGGCGG.................................................... 32 23 1 ......................CCTATATATAGGACTTTGGG....................................................... 3 20 1 ......................CCTATATATAGGACTTTGGGCG..................................................... 53 22 1 ......................CCTATATATAGGACTTTGGGC...................................................... 7 21 1 .......................CTATATATAGGACTTTGGGCGG.................................................... 11 22 1 .......................CTATATATAGGACTTTGGGC...................................................... 1 20 1 .......................CTATATATAGGACTTTGGGCG..................................................... 4 21 1 .......................CTATATATAGGACTTTGGGCGGC................................................... 5 23 1 ........................TATATATAGGACTTTGGGCGGCT.................................................. 1 23 1 ........................TATATATAGGACTTTGGGCGG.................................................... 1 21 1 ........................TATATATAGGACTTTGGGCGGC................................................... 2 22 1 >cand-miR-#9 CUCGGACUACACAUGUGUGCUGAUGCUCGGACCACAUGUGUGUGCUGAUGCUGGGACCACACGUGUGUGCUGAUGCUCGGAUCACACGUGUGUGCUGAUG .((((.(.(((((((((((((((.((((((..(((((((((((.((......)).).))))))))))..)))).))))))..)))))))))))))))).. (-47.70) CTCGGACTACACATGTGTGC................................................................................ 2 20 2 ....................TGATGCTCGGACCACATGTGTGT......................................................... 10 23 1 ....................TGATGCTCGGACCACATGTG............................................................ 1 20 1 ....................TGATGCTCGGACCACATGTGTG.......................................................... 23 22 1 ....................TGATGCTCGGACCACATGTGT........................................................... 50 21 1 .....................GATGCTCGGACCACATGTGTG.......................................................... 11 21 1 .....................GATGCTCGGACCACATGTGT........................................................... 23 20 1 .....................GATGCTCGGACCACATGTGTGT......................................................... 5 22 1 ...........................................................CACGTGTGTGCTGATGCTCGGAT.................. 1 23 1 ...........................................................CACGTGTGTGCTGATGCTCGGA................... 4 22 1 >cand-miR-#10 GAACUGCCUCUUGCAGCAGACCACAGUUCAGUUGCCAUAUAGGGUGCUGGUAACUGAACUGUGGUCCUCUGCAAGAGCAGCAA ...((((.((((((((..(((((((((((((((((((..........)))))))))))))))))))..))))))))))))... (-52.70) ..................................................TAACTGAACTGTGGTCCTCTGC........... 12 22 1 ..................................................TAACTGAACTGTGGTCCTCTGCA.......... 3 23 1 ..................................................TAACTGAACTGTGGTCCTCTG............ 4 21 2 >cand-miR-#11 UUUCAGUGAAGUGGGAAAAUUGACAUGGAUUGUUACAGAGAAAUCUGUCAUUUUUCCCACCUAAAAAUUGAUCU ..(((((...(((((((((.(((((..((((..........))))))))).)))))))))......)))))... (-22.90) ........AAGTGGGAAAATTGACATGGAT............................................ 1 22 2 ...........................................TCTGTCATTTTTCCCACCTAAA......... 14 22 1 ...........................................TCTGTCATTTTTCCCACCTAAAA........ 1 23 1 ...........................................TCTGTCATTTTTCCCACCTAA.......... 22 21 1 ...........................................TCTGTCATTTTTCCCACCTA........... 9 20 1 >cand-miR-#12 ACGGUAUCCUGCCAGUCUCUGGGAACAUCUACAAAGUGAAGUAGAAAGAAUGCAAGAGCUCACUUUCUAGAUGUUCCCGGAAGCUUGGUGGGGACAG ...((.(((..((((..((((((((((((((.(((((((.((...............))))))))).))))))))))))))..).)))..))))).. (-45.76) ..................CTGGGAACATCTACAAAGTGAAG........................................................ 1 23 1 ..................CTGGGAACATCTACAAAGTGA.......................................................... 1 21 1 ...................TGGGAACATCTACAAAGTGAAGT....................................................... 10 23 1 ...................TGGGAACATCTACAAAGTGAAG........................................................ 8 22 1 ....................GGGAACATCTACAAAGTGAAGT....................................................... 1 22 1 ....................GGGAACATCTACAAAGTGAAG........................................................ 2 21 1 ..........................................................CTCACTTTCTAGATGTTCCCGG................. 1 22 1 ...........................................................TCACTTTCTAGATGTTCCCGG................. 2 21 1 .............................................................ACTTTCTAGATGTTCCCGGAA............... 1 21 1 .............................................................ACTTTCTAGATGTTCCCGGA................ 1 20 1 .............................................................ACTTTCTAGATGTTCCCGGAAG.............. 2 22 1 >cand-miR-#13 AAGGUUGUGAGCUGCCCUAUGAGUUCUAGGCAUUGAAUCUGGGGCCUCUGGAAGAGCAGUCAAUGCUCUGAACUCCUAAGACAUCUCUCUAACCAGA ..(((((.(((.((.(.((.((((((..((((((((..(((....(((.....))))))))))))))..)))))).)).).)).))).).))))... (-32.40) ..........................................................GTCAATGCTCTGAACTCCTAA.................. 1 21 1 ..........................................................GTCAATGCTCTGAACTCCTA................... 1 20 1 ..........................................................GTCAATGCTCTGAACTCCTAAG................. 8 22 1 >cand-miR-#14 UGUCCCAAAGGAGUCCUGCACAAUCAUUCAGAGGUAAAAAGAGAAAAAUCAACUCAAGCAGCAUGUGUUUGUCCCUUAGCAGUGCCAAGACCCUGGAUGAUGUAGCACUGACUUUCUGGAGU ....(((..((((((.((((((.((((((((.(((.....(((.........))).....((((.((((........))))))))....)))))))))))))).)))..)))))).)))... (-33.70) ...........................................................................................CCTGGATGATGTAGCACTGACT......... 21 22 1 ...........................................................................................CCTGGATGATGTAGCACTGACTT........ 2 23 1 ............................................................................................CTGGATGATGTAGCACTGACT......... 11 21 1 ............................................................................................CTGGATGATGTAGCACTGACTT........ 1 22 1 >cand-miR-#15 GCUGAAACUUCUAAACUUAUGAGCCCAAACACUUUCUCUCAAAUGUUUGUUAUAGUAAUGCAAAAUUUGAGAGAAAUGUUUGGGCUCAUAAGUUUAGAAUUUUUUUCAGU (((((((.(((((((((((((((((((((((.((((((((((((.(((((.........))))))))))))))))))))))))))))))))))))))))....))))))) (-60.00) ..............................................................AAATTTGAGAGAAATGTTTGGG.......................... 1 22 1 ...............................................................AATTTGAGAGAAATGTTTGG........................... 1 20 1 ................................................................ATTTGAGAGAAATGTTTGGGC......................... 1 21 1 ................................................................ATTTGAGAGAAATGTTTGGGCTC....................... 1 23 1 ................................................................ATTTGAGAGAAATGTTTGGGCT........................ 3 22 1 .................................................................TTTGAGAGAAATGTTTGGGCTCA...................... 10 23 1 .................................................................TTTGAGAGAAATGTTTGGGC......................... 1 20 1 .................................................................TTTGAGAGAAATGTTTGGGCTC....................... 21 22 1 .................................................................TTTGAGAGAAATGTTTGGGCT........................ 4 21 1 ..................................................................TTGAGAGAAATGTTTGGGCTC....................... 21 21 1 ..................................................................TTGAGAGAAATGTTTGGGCT........................ 2 20 1 ..................................................................TTGAGAGAAATGTTTGGGCTCAT..................... 3 23 1 ..................................................................TTGAGAGAAATGTTTGGGCTCA...................... 5 22 1 >cand-miR-#16 GGGUAGUGCUGAGGAUUGACCUAGAACAUCAUGCAAGCUAGGCAAGCACUCAGUUACUGA ...((((((((((..(((.(((((.............))))))))...))))).))))). (-19.32) ...TAGTGCTGAGGATTGACCTAG.................................... 17 21 1 ...TAGTGCTGAGGATTGACCTA..................................... 1 20 1 ...TAGTGCTGAGGATTGACCTAGAA.................................. 3 23 1 ...TAGTGCTGAGGATTGACCTAGA................................... 43 22 1 ....AGTGCTGAGGATTGACCTAG.................................... 1 20 1 .....................................CTAGGCAAGCACTCAGTTACTGA 1 23 1 ......................................TAGGCAAGCACTCAGTTACTGA 2 22 1 >cand-miR-#17 GCCUGCUUCUAGAGGAUAGAGGUAGAGAGUGGCCAGCUGCUGCCAGCCUCUGACCCCUGUCCUCUGCACCACAGGU (((((....((((((((((.(((((((..((((........))))..)))).))).)))))))))).....))))) (-35.90) .......TCTAGAGGATAGAGGTAGAGAGT.............................................. 1 23 1 ........CTAGAGGATAGAGGTAGAGAG............................................... 2 21 1 ........CTAGAGGATAGAGGTAGAGAGT.............................................. 7 22 1 .........TAGAGGATAGAGGTAGAGAGTG............................................. 11 22 1 .........TAGAGGATAGAGGTAGAGAGTGG............................................ 18 23 1 .........TAGAGGATAGAGGTAGAGAGT.............................................. 4 21 1 ..........AGAGGATAGAGGTAGAGAGTGG............................................ 1 22 1 >cand-miR-#18 GGGAGGUGUGUGUGUGUGUGUGUGUGUGUGUGUUCGUAUGUGUACAUGUGUGUACAUGUGUGUACGUACACACUCGGACGCACACGCAUUCACGCCUUAUGCA ..((((((((.((((((((((((.((.((((((.((((((((((((....)))))))....))))).)))))).)).)))))))))))).))))))))..... (-57.30) ......TGTGTGTGTGTGTGTGTGTGT............................................................................ 1 21 2245750 ......TGTGTGTGTGTGTGTGTGTG............................................................................. 2 20 2347032 ......TGTGTGTGTGTGTGTGTGTGTG........................................................................... 3 22 2077791 ........TGTGTGTGTGTGTGTGTGTGT.......................................................................... 1 21 2245750 ........TGTGTGTGTGTGTGTGTGTG........................................................................... 2 20 2347032 ........TGTGTGTGTGTGTGTGTGTGTG......................................................................... 3 22 2077791 ..........TGTGTGTGTGTGTGTGTGTGT........................................................................ 1 21 2245750 ..........TGTGTGTGTGTGTGTGTGTG......................................................................... 2 20 2347032 ..........TGTGTGTGTGTGTGTGTGTGTG....................................................................... 3 22 2077791 ............TGTGTGTGTGTGTGTGTGTGT...................................................................... 1 21 2245750 ............TGTGTGTGTGTGTGTGTGTG....................................................................... 2 20 2347032 ..............................................................TACGTACACACTCGGACGCAC.................... 13 21 1 ..............................................................TACGTACACACTCGGACGCA..................... 2 20 1 ..............................................................TACGTACACACTCGGACGCACA................... 8 22 1 ..................................................................TACACACTCGGACGCACACGC................ 1 21 1 ..................................................................TACACACTCGGACGCACACG................. 1 20 1 >cand-miR-#19 CUUCCAGUGUGAGCUCAGCUUUGACUGAGAGGUAAGGAAUGAGUUAUACUGUGUUACUCAUUCCUUACCUCACCGUCAAAGGAACUGACUUUGGGUGUA ..(((((.((.((.((..(((((((.(.((((((((((((((((.((.....)).)))))))))))))))).).))))))))).)).)).))))).... (-45.00) ...................TTTGACTGAGAGGTAAGGAATG.......................................................... 16 22 1 ...................TTTGACTGAGAGGTAAGGAATGA......................................................... 3 23 1 ...................TTTGACTGAGAGGTAAGGAAT........................................................... 6 21 1 ....................TTGACTGAGAGGTAAGGAATG.......................................................... 1 21 1 ....................TTGACTGAGAGGTAAGGAAT........................................................... 1 20 1