Supplemental table S3


List of Gene Ontology (GO) terms over-represented in the single-batch analysis (MSCs batch1-batch4) and in the lists derived from the rank products analysis (MSCs rank products).


MSCs batch 1 repressed

id name genes expect P adj P
GO:0007067 mitosis : biological_process 26 5.61453 8.42571e-11 9.80853e-06
GO:0000087 M phase of mitotic cell cycle : biological_process 26 5.66878 1.04558e-10 1.21718e-05
GO:0005975 carbohydrate metabolic process : biological_process 38 11.663 1.82828e-10 2.12834e-05
GO:0044420 extracellular matrix part : cellular_component 16 2.33261 1.15636e-09 0.000134614
GO:0022403 cell cycle phase : biological_process 33 9.79153 1.26238e-09 0.000146956
GO:0044262 cellular carbohydrate metabolic process : biological_process 29 7.81152 1.42094e-09 0.000165415
GO:0000278 mitotic cell cycle : biological_process 33 9.95427 1.91723e-09 0.000223188
GO:0051301 cell division : biological_process 25 6.37399 6.41684e-09 0.000746997
GO:0000279 M phase : biological_process 28 7.86577 6.97067e-09 0.00081147
GO:0022402 cell cycle process : biological_process 35 13.2091 1.82919e-07 0.021294
GO:0006091 generation of precursor metabolites and energy : biological_process 25 7.62166 2.19383e-07 0.0255388
GO:0005856 cytoskeleton : cellular_component 62 31.436 2.47573e-07 0.0288204
GO:0019318 hexose metabolic process : biological_process 17 3.87864 3.52892e-07 0.0410808
GO:0007049 cell cycle : biological_process 48 22.214 4.88295e-07 0.0568434
GO:0006007 glucose catabolic process : biological_process 11 1.6274 5.43991e-07 0.0633271
GO:0005996 monosaccharide metabolic process : biological_process 17 4.01425 5.78354e-07 0.0673273
GO:0005576 extracellular region : cellular_component 82 47.3031 5.91648e-07 0.0688749
GO:0005819 spindle : cellular_component 13 2.35973 6.09523e-07 0.0709558
GO:0006096 glycolysis : biological_process 10 1.35617 7.68637e-07 0.0894785
GO:0031012 extracellular matrix : cellular_component 25 8.16413 7.96737e-07 0.0927497
GO:0007346 regulation of mitotic cell cycle : biological_process 14 2.84795 9.4254e-07 0.109723
GO:0000777 condensed chromosome kinetochore : cellular_component 9 1.08493 9.61085e-07 0.111882
GO:0006006 glucose metabolic process : biological_process 14 2.9022 1.18899e-06 0.138412
GO:0000779 condensed chromosome, centromeric region : cellular_component 9 1.11206 1.20201e-06 0.139929
GO:0005578 proteinaceous extracellular matrix : cellular_component 24 7.81152 1.24583e-06 0.145029
GO:0008652 amino acid biosynthetic process : biological_process 9 1.13918 1.49334e-06 0.173843
GO:0019320 hexose catabolic process : biological_process 11 1.87151 2.32247e-06 0.270364
GO:0004720 protein-lysine 6-oxidase activity : molecular_function 4 0.135617 2.61968e-06 0.304962
GO:0046365 monosaccharide catabolic process : biological_process 11 1.89863 2.68888e-06 0.313018
GO:0044430 cytoskeletal part : cellular_component 42 19.5017 2.82694e-06 0.32909
GO:0032395 MHC class II receptor activity : molecular_function 5 0.271233 3.24524e-06 0.377785
GO:0046164 alcohol catabolic process : biological_process 11 2.00713 4.71001e-06 0.548302
GO:0044421 extracellular region part : cellular_component 42 20.0441 5.58369e-06 0.650009
GO:0042613 MHC class II protein complex : cellular_component 5 0.298357 5.81674e-06 0.677138
GO:0007155 cell adhesion : biological_process 41 19.5559 7.13873e-06 0.831034
GO:0022610 biological adhesion : biological_process 41 19.5559 7.13873e-06 0.831034
GO:0008305 integrin complex : cellular_component 7 0.759454 7.49842e-06 0.872906
GO:0005198 structural molecule activity : molecular_function 38 17.5759 7.77226e-06 0.904784
GO:0044275 cellular carbohydrate catabolic process : biological_process 12 2.52247 7.94351e-06 0.92472
GO:0015630 microtubule cytoskeleton : cellular_component 30 12.5039 1.00837e-05 1
GO:0000776 kinetochore : cellular_component 9 1.43754 1.1385e-05 1
GO:0005201 extracellular matrix structural constituent : molecular_function 11 2.22411 1.29777e-05 1
GO:0045787 positive regulation of cell cycle : biological_process 7 0.840824 1.55179e-05 1
GO:0031577 spindle checkpoint : biological_process 4 0.189863 1.75571e-05 1
GO:0007229 integrin-mediated signaling pathway : biological_process 9 1.51891 1.81074e-05 1
GO:0000775 chromosome, centromeric region : cellular_component 11 2.30548 1.83777e-05 1
GO:0016052 carbohydrate catabolic process : biological_process 12 2.76658 2.06565e-05 1
GO:0016051 carbohydrate biosynthetic process : biological_process 12 2.7937 2.28142e-05 1
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II : biological_process 5 0.379727 2.35566e-05 1
GO:0048513 organ development : biological_process 60 34.745 2.53361e-05 1
GO:0000226 microtubule cytoskeleton organization and biogenesis : biological_process 12 2.84795 2.77247e-05 1
GO:0006563 L-serine metabolic process : biological_process 4 0.216987 3.43597e-05 1
GO:0045840 positive regulation of mitosis : biological_process 5 0.40685 3.45478e-05 1
GO:0034637 cellular carbohydrate biosynthetic process : biological_process 11 2.49535 3.90364e-05 1
GO:0051726 regulation of cell cycle : biological_process 22 8.5981 5.94159e-05 1
GO:0044271 nitrogen compound biosynthetic process : biological_process 11 2.65809 7.03091e-05 1
GO:0005604 basement membrane : cellular_component 8 1.41041 7.32348e-05 1
GO:0055114 oxidation reduction : biological_process 32 15.4061 8.66029e-05 1
GO:0007051 spindle organization and biogenesis : biological_process 6 0.759454 8.77526e-05 1
GO:0009309 amine biosynthetic process : biological_process 9 1.84439 8.82936e-05 1

MSCs batch 1 induced

id name genes expect P adj P
GO:0005125 cytokine activity : molecular_function 16 4.7258 2.34948e-05 1
GO:0045595 regulation of cell differentiation : biological_process 14 4.22491 9.48351e-05 1

MSCs batch 2 repressed

id name genes expect P adj P
GO:0007067 mitosis : biological_process 52 2.56137 1.51795e-53 1.76708e-48
GO:0000087 M phase of mitotic cell cycle : biological_process 52 2.58612 2.64222e-53 3.07586e-48
GO:0000279 M phase : biological_process 57 3.5884 3.32926e-52 3.87566e-47
GO:0022403 cell cycle phase : biological_process 59 4.46694 3.91581e-49 4.55848e-44
GO:0000278 mitotic cell cycle : biological_process 57 4.54118 3.98118e-46 4.63457e-41
GO:0051301 cell division : biological_process 49 2.90784 4.26042e-46 4.95964e-41
GO:0022402 cell cycle process : biological_process 62 6.02603 6.7434e-45 7.85013e-40
GO:0007049 cell cycle : biological_process 74 10.1341 2.5188e-43 2.93219e-38
GO:0005694 chromosome : cellular_component 43 4.44219 7.71321e-30 8.9791e-25
GO:0044427 chromosomal part : cellular_component 40 3.69976 1.143e-29 1.33059e-24
GO:0000775 chromosome, centromeric region : cellular_component 25 1.05177 6.88323e-28 8.01291e-23
GO:0005819 spindle : cellular_component 25 1.07652 1.33262e-27 1.55134e-22
GO:0000777 condensed chromosome kinetochore : cellular_component 17 0.494951 1.48737e-22 1.73148e-17
GO:0015630 microtubule cytoskeleton : cellular_component 40 5.70432 1.9056e-22 2.21835e-17
GO:0000779 condensed chromosome, centromeric region : cellular_component 17 0.507325 2.51322e-22 2.92569e-17
GO:0006259 DNA metabolic process : biological_process 40 5.92704 7.82332e-22 9.10729e-17
GO:0000776 kinetochore : cellular_component 18 0.655811 1.09651e-21 1.27647e-16
GO:0006260 DNA replication : biological_process 28 2.68511 1.52257e-20 1.77245e-15
GO:0000793 condensed chromosome : cellular_component 19 1.10127 1.50734e-18 1.75472e-13
GO:0007346 regulation of mitotic cell cycle : biological_process 20 1.29925 2.04183e-18 2.37694e-13
GO:0044430 cytoskeletal part : cellular_component 43 8.89675 6.73747e-18 7.84322e-13
GO:0007059 chromosome segregation : biological_process 16 0.791922 5.36904e-17 6.25021e-12
GO:0007051 spindle organization and biogenesis : biological_process 12 0.346466 2.5245e-16 2.93882e-11
GO:0007017 microtubule-based process : biological_process 24 2.85834 1.42104e-15 1.65426e-10
GO:0051726 regulation of cell cycle : biological_process 27 3.92249 3.26139e-15 3.79664e-10
GO:0005856 cytoskeleton : cellular_component 50 14.3412 6.22832e-15 7.25051e-10
GO:0000070 mitotic sister chromatid segregation : biological_process 11 0.383587 5.68615e-14 6.61936e-09
GO:0043234 protein complex : cellular_component 60 21.0602 6.39835e-14 7.44845e-09
GO:0000819 sister chromatid segregation : biological_process 11 0.395961 8.57067e-14 9.97728e-09
GO:0000075 cell cycle checkpoint : biological_process 13 0.767175 5.65917e-13 6.58795e-08
GO:0031981 nuclear lumen : cellular_component 46 13.9205 6.16398e-13 7.17562e-08
GO:0005654 nucleoplasm : cellular_component 35 8.51317 1.23679e-12 1.43978e-07
GO:0000226 microtubule cytoskeleton organization and biogenesis : biological_process 15 1.29925 3.3144e-12 3.85836e-07
GO:0044428 nuclear part : cellular_component 52 18.2018 4.03015e-12 4.69158e-07
GO:0006261 DNA-dependent DNA replication : biological_process 13 0.903286 5.20938e-12 6.06434e-07
GO:0010564 regulation of cell cycle process : biological_process 12 0.754801 1.0078e-11 1.1732e-06
GO:0006974 response to DNA damage stimulus : biological_process 23 3.93486 1.18848e-11 1.38353e-06
GO:0005874 microtubule : cellular_component 20 2.90784 1.47229e-11 1.71393e-06
GO:0043233 organelle lumen : cellular_component 49 17.6203 4.95298e-11 5.76586e-06
GO:0007088 regulation of mitosis : biological_process 10 0.507325 5.62741e-11 6.55098e-06
GO:0005524 ATP binding : molecular_function 47 16.519 6.16171e-11 7.17297e-06
GO:0070013 intracellular organelle lumen : cellular_component 48 17.2243 7.55935e-11 8.79999e-06
GO:0032559 adenyl ribonucleotide binding : molecular_function 47 16.7417 9.68011e-11 1.12688e-05
GO:0031974 membrane-enclosed lumen : cellular_component 49 18.0286 1.09899e-10 1.27936e-05
GO:0051276 chromosome organization : biological_process 23 4.54118 2.10004e-10 2.4447e-05
GO:0007093 mitotic cell cycle checkpoint : biological_process 9 0.420709 2.35856e-10 2.74564e-05
GO:0051716 cellular response to stimulus : biological_process 22 4.30608 4.48624e-10 5.22252e-05
GO:0034984 cellular response to DNA damage stimulus : biological_process 20 3.5389 4.97885e-10 5.79597e-05
GO:0030554 adenyl nucleotide binding : molecular_function 47 17.6079 5.17068e-10 6.0193e-05
GO:0000922 spindle pole : cellular_component 8 0.321718 6.33288e-10 7.37223e-05
GO:0033554 cellular response to stress : biological_process 21 4.1081 1.12459e-09 0.000130915
GO:0005876 spindle microtubule : cellular_component 7 0.247476 2.75979e-09 0.000321273
GO:0032555 purine ribonucleotide binding : molecular_function 50 20.5529 3.06094e-09 0.000356331
GO:0032553 ribonucleotide binding : molecular_function 50 20.5529 3.06094e-09 0.000356331
GO:0006281 DNA repair : biological_process 18 3.16769 3.45937e-09 0.000402712
GO:0003777 microtubule motor activity : molecular_function 11 0.977529 3.59778e-09 0.000418825
GO:0007018 microtubule-based movement : biological_process 12 1.23738 3.96896e-09 0.000462035
GO:0031577 spindle checkpoint : biological_process 5 0.0866165 5.73651e-09 0.000667798
GO:0030261 chromosome condensation : biological_process 7 0.284597 8.45557e-09 0.000984329
GO:0006270 DNA replication initiation : biological_process 7 0.284597 8.45557e-09 0.000984329
GO:0017076 purine nucleotide binding : molecular_function 50 21.4438 1.2359e-08 0.00143873
GO:0051303 establishment of chromosome localization : biological_process 5 0.0989903 1.51428e-08 0.0017628
GO:0050000 chromosome localization : biological_process 5 0.0989903 1.51428e-08 0.0017628
GO:0006996 organelle organization : biological_process 32 10.4064 1.68919e-08 0.00196641
GO:0005875 microtubule associated complex : cellular_component 12 1.41061 1.79116e-08 0.00208512
GO:0006323 DNA packaging : biological_process 11 1.16314 2.33482e-08 0.00271801
GO:0030705 cytoskeleton-dependent intracellular transport : biological_process 12 1.52198 4.22839e-08 0.00492235
GO:0007076 mitotic chromosome condensation : biological_process 6 0.222728 5.54073e-08 0.00645008
GO:0000166 nucleotide binding : molecular_function 52 24.5743 1.41753e-07 0.0165017
GO:0007052 mitotic spindle organization and biogenesis : biological_process 5 0.148485 2.05644e-07 0.0239394
GO:0007094 mitotic cell cycle spindle assembly checkpoint : biological_process 4 0.0742427 3.3671e-07 0.0391971
GO:0048015 phosphoinositide-mediated signaling : biological_process 10 1.23738 4.58644e-07 0.0533916
GO:0045840 positive regulation of mitosis : biological_process 5 0.185607 7.56373e-07 0.0880509
GO:0003774 motor activity : molecular_function 11 1.7447 1.4923e-06 0.173722
GO:0005657 replication fork : cellular_component 6 0.383587 1.92028e-06 0.223543
GO:0051325 interphase : biological_process 9 1.16314 2.50849e-06 0.292018
GO:0008283 cell proliferation : biological_process 27 9.9609 2.73342e-06 0.318203
GO:0000785 chromatin : cellular_component 11 1.93031 4.01098e-06 0.466926
GO:0006950 response to stress : biological_process 35 15.4796 5.20398e-06 0.605806
GO:0007096 regulation of exit from mitosis : biological_process 4 0.136112 7.05426e-06 0.821201
GO:0000940 outer kinetochore of condensed chromosome : cellular_component 3 0.0494951 7.41997e-06 0.863774
GO:0034508 centromere complex assembly : biological_process 3 0.0494951 7.41997e-06 0.863774
GO:0051383 kinetochore organization : biological_process 3 0.0494951 7.41997e-06 0.863774
GO:0005815 microtubule organizing center : cellular_component 12 2.52425 9.48666e-06 1
GO:0010458 exit from mitosis : biological_process 4 0.148485 1.04786e-05 1
GO:0051640 organelle localization : biological_process 7 0.767175 1.12476e-05 1
GO:0051329 interphase of mitotic cell cycle : biological_process 8 1.10127 1.46294e-05 1
GO:0051310 metaphase plate congression : biological_process 3 0.0618689 1.83799e-05 1
GO:0051439 regulation of ubiquitin-protein ligase activity during mitotic cell cycle : biological_process 7 0.829044 1.88718e-05 1
GO:0051438 regulation of ubiquitin-protein ligase activity : biological_process 7 0.890913 3.03331e-05 1
GO:0045787 positive regulation of cell cycle : biological_process 5 0.383587 3.6402e-05 1
GO:0043596 nuclear replication fork : cellular_component 4 0.197981 3.70528e-05 1
GO:0051656 establishment of organelle localization : biological_process 6 0.631063 3.81933e-05 1
GO:0044454 nuclear chromosome part : cellular_component 7 0.928034 3.96042e-05 1
GO:0051340 regulation of ligase activity : biological_process 7 0.928034 3.96042e-05 1
GO:0005871 kinesin complex : cellular_component 4 0.210354 4.79837e-05 1
GO:0000228 nuclear chromosome : cellular_component 8 1.29925 4.87366e-05 1
GO:0000910 cytokinesis : biological_process 5 0.420709 5.78369e-05 1
GO:0019932 second-messenger-mediated signaling : biological_process 11 2.72223 9.79473e-05 1

MSCs batch 2 induced

id name genes expect P adj P
GO:0048731 system development : biological_process 47 15.7977 6.28008e-12 7.31077e-07
GO:0005576 extracellular region : cellular_component 46 16.0554 4.04832e-11 4.71273e-06
GO:0007399 nervous system development : biological_process 26 6.67442 3.06728e-09 0.000357069
GO:0009888 tissue development : biological_process 17 3.01039 1.01235e-08 0.0011785
GO:0048869 cellular developmental process : biological_process 34 11.8206 2.13789e-08 0.00248876
GO:0030154 cell differentiation : biological_process 32 10.7711 2.81577e-08 0.00327789
GO:0048729 tissue morphogenesis : biological_process 8 0.736488 7.30652e-07 0.0850567
GO:0044421 extracellular region part : cellular_component 22 6.80331 1.31681e-06 0.153293
GO:0048513 organ development : biological_process 30 11.793 2.14223e-06 0.249381
GO:0007166 cell surface receptor linked signal transduction : biological_process 32 13.1095 2.24971e-06 0.261893
GO:0008544 epidermis development : biological_process 9 1.28885 6.08278e-06 0.708108
GO:0007398 ectoderm development : biological_process 9 1.38091 1.06495e-05 1
GO:0048730 epidermis morphogenesis : biological_process 6 0.524748 1.3799e-05 1
GO:0060113 inner ear receptor cell differentiation : biological_process 4 0.16571 1.92374e-05 1
GO:0005509 calcium ion binding : molecular_function 22 8.13819 2.24823e-05 1
GO:0042490 mechanoreceptor differentiation : biological_process 4 0.184122 3.00234e-05 1
GO:0035315 hair cell differentiation : biological_process 4 0.193328 3.68215e-05 1
GO:0008283 cell proliferation : biological_process 20 7.41091 5.55562e-05 1
GO:0009913 epidermal cell differentiation : biological_process 5 0.432687 7.02493e-05 1
GO:0048839 inner ear development : biological_process 5 0.441893 7.78367e-05 1
GO:0045595 regulation of cell differentiation : biological_process 9 1.78598 8.0718e-05 1

MSCs batch 3 repressed

id name genes expect P adj P
GO:0005576 extracellular region : cellular_component 95 26.1548 5.5823e-30 6.49847e-25
GO:0031012 extracellular matrix : cellular_component 38 4.51411 3.79761e-24 4.42087e-19
GO:0005578 proteinaceous extracellular matrix : cellular_component 37 4.31914 8.40076e-24 9.7795e-19
GO:0044421 extracellular region part : cellular_component 54 11.0828 2.21362e-22 2.57692e-17
GO:0044420 extracellular matrix part : cellular_component 18 1.28974 5.41324e-16 6.30166e-11
GO:0005201 extracellular matrix structural constituent : molecular_function 17 1.22976 4.22436e-15 4.91766e-10
GO:0048513 organ development : biological_process 59 19.2112 7.38183e-15 8.59334e-10
GO:0048731 system development : biological_process 67 25.7349 2.21107e-13 2.57395e-08
GO:0001871 pattern binding : molecular_function 18 1.82964 3.27112e-13 3.80798e-08
GO:0030247 polysaccharide binding : molecular_function 17 1.60468 4.32034e-13 5.02939e-08
GO:0007155 cell adhesion : biological_process 40 10.8129 9.4332e-13 1.09814e-07
GO:0022610 biological adhesion : biological_process 40 10.8129 9.4332e-13 1.09814e-07
GO:0005581 collagen : cellular_component 11 0.524896 2.18196e-12 2.54006e-07
GO:0005539 glycosaminoglycan binding : molecular_function 16 1.54469 3.06246e-12 3.56508e-07
GO:0005198 structural molecule activity : molecular_function 34 9.71808 2.43099e-10 2.82997e-05
GO:0001501 skeletal development : biological_process 16 2.47451 4.02851e-09 0.000468967
GO:0009888 tissue development : biological_process 22 4.90403 5.1573e-09 0.000600371
GO:0030246 carbohydrate binding : molecular_function 20 4.15418 7.96566e-09 0.000927298
GO:0030198 extracellular matrix organization and biogenesis : biological_process 10 0.839834 9.60568e-09 0.00111822
GO:0030199 collagen fibril organization : biological_process 7 0.299941 1.04421e-08 0.00121559
GO:0008201 heparin binding : molecular_function 11 1.21476 3.43722e-08 0.00400134
GO:0001944 vasculature development : biological_process 16 2.99941 6.25196e-08 0.00727803
GO:0005583 fibrillar collagen : cellular_component 5 0.134973 8.80496e-08 0.01025
GO:0009611 response to wounding : biological_process 23 6.28376 1.00396e-07 0.0116873
GO:0009605 response to external stimulus : biological_process 29 9.53811 1.17027e-07 0.0136233
GO:0001568 blood vessel development : biological_process 15 2.93942 2.89008e-07 0.033644
GO:0005102 receptor binding : molecular_function 31 11.2028 3.34319e-07 0.0389187
GO:0043062 extracellular structure organization : biological_process 11 1.5297 3.82117e-07 0.044483
GO:0007160 cell-matrix adhesion : biological_process 10 1.28974 6.42512e-07 0.0747961
GO:0007166 cell surface receptor linked signal transduction : biological_process 46 21.3558 6.64912e-07 0.0774038
GO:0004867 serine-type endopeptidase inhibitor activity : molecular_function 10 1.31974 7.97685e-07 0.0928602
GO:0007167 enzyme linked receptor protein signaling pathway : biological_process 19 5.039 8.56711e-07 0.0997315
GO:0005604 basement membrane : cellular_component 8 0.779846 9.90032e-07 0.115252
GO:0031589 cell-substrate adhesion : biological_process 10 1.36473 1.09171e-06 0.127088
GO:0004866 endopeptidase inhibitor activity : molecular_function 12 2.06959 1.17812e-06 0.137148
GO:0030414 protease inhibitor activity : molecular_function 12 2.12958 1.59648e-06 0.185849
GO:0009887 organ morphogenesis : biological_process 21 6.52371 2.87387e-06 0.334553
GO:0019838 growth factor binding : molecular_function 9 1.24475 4.23805e-06 0.49336
GO:0004857 enzyme inhibitor activity : molecular_function 15 3.68927 5.00303e-06 0.582413
GO:0005540 hyaluronic acid binding : molecular_function 5 0.269947 5.35806e-06 0.623743
GO:0008544 epidermis development : biological_process 11 2.09958 8.78675e-06 1
GO:0005615 extracellular space : cellular_component 21 7.0636 9.75746e-06 1
GO:0048514 blood vessel morphogenesis : biological_process 12 2.57949 1.16353e-05 1
GO:0001502 cartilage condensation : biological_process 4 0.164967 1.50615e-05 1
GO:0007398 ectoderm development : biological_process 11 2.24955 1.69008e-05 1
GO:0007229 integrin-mediated signaling pathway : biological_process 7 0.839834 1.96778e-05 1
GO:0051216 cartilage development : biological_process 6 0.599881 2.7058e-05 1
GO:0005520 insulin-like growth factor binding : molecular_function 5 0.374926 3.04828e-05 1
GO:0006928 cell motion : biological_process 18 6.16378 5.34203e-05 1
GO:0051674 localization of cell : biological_process 18 6.16378 5.34203e-05 1
GO:0001525 angiogenesis : biological_process 10 2.12958 5.76531e-05 1
GO:0006959 humoral immune response : biological_process 7 1.0048 6.41091e-05 1
GO:0002526 acute inflammatory response : biological_process 7 1.04979 8.50514e-05 1

MSCs batch 3 induced

id name genes expect P adj P
GO:0006950 response to stress : biological_process 50 26.0057 7.02667e-06 0.817988
GO:0006986 response to unfolded protein : biological_process 8 1.12255 1.46978e-05 1
GO:0051789 response to protein stimulus : biological_process 8 1.12255 1.46978e-05 1
GO:0042221 response to chemical stimulus : biological_process 27 11.9947 8.24229e-05 1
GO:0048731 system development : biological_process 59 35.6721 8.66654e-05 1
GO:0042060 wound healing : biological_process 11 2.70244 8.71762e-05 1

MSCs batch 4 repressed

id name genes expect P adj P
GO:0007565 female pregnancy : biological_process 6 0.330529 9.63851e-07 0.112204
GO:0005576 extracellular region : cellular_component 23 9.14987 2.94286e-05 1

MSCs batch 4 induced

id name genes expect P adj P
GO:0005576 extracellular region : cellular_component 71 22.2704 3.9445e-19 4.59187e-14
GO:0044421 extracellular region part : cellular_component 42 9.43684 3.40484e-16 3.96364e-11
GO:0048731 system development : biological_process 61 21.9129 1.16613e-13 1.35752e-08
GO:0031226 intrinsic to plasma membrane : cellular_component 47 14.6469 1.00692e-12 1.17217e-07
GO:0005887 integral to plasma membrane : cellular_component 46 14.4681 2.52228e-12 2.93623e-07
GO:0044459 plasma membrane part : cellular_component 57 22.3343 3.01106e-11 3.50523e-06
GO:0007166 cell surface receptor linked signal transduction : biological_process 49 18.1841 1.57437e-10 1.83275e-05
GO:0007399 nervous system development : biological_process 33 9.25807 2.53531e-10 2.9514e-05
GO:0005615 extracellular space : cellular_component 26 6.01455 4.19841e-10 4.88745e-05
GO:0031012 extracellular matrix : cellular_component 20 3.84369 2.10197e-09 0.000244695
GO:0005578 proteinaceous extracellular matrix : cellular_component 19 3.67769 6.04837e-09 0.000704103
GO:0005509 calcium ion binding : molecular_function 33 11.2885 3.40011e-08 0.00395813
GO:0007155 cell adhesion : biological_process 29 9.20699 5.12269e-08 0.00596342
GO:0022610 biological adhesion : biological_process 29 9.20699 5.12269e-08 0.00596342
GO:0005102 receptor binding : molecular_function 29 9.539 1.089e-07 0.0126773
GO:0048699 generation of neurons : biological_process 17 3.53722 1.11154e-07 0.0129397
GO:0048468 cell development : biological_process 22 6.19333 3.11133e-07 0.0362196
GO:0022008 neurogenesis : biological_process 17 3.80539 3.1443e-07 0.0366034
GO:0048513 organ development : biological_process 39 16.358 3.85273e-07 0.0448505
GO:0004872 receptor activity : molecular_function 40 17.0732 4.19603e-07 0.0488468
GO:0004888 transmembrane receptor activity : molecular_function 29 10.4457 7.13354e-07 0.083043
GO:0048523 negative regulation of cellular process : biological_process 36 14.9023 8.41039e-07 0.097907
GO:0030154 cell differentiation : biological_process 36 14.9406 8.93187e-07 0.103978
GO:0048666 neuron development : biological_process 13 2.42625 1.06192e-06 0.12362
GO:0051093 negative regulation of developmental process : biological_process 18 4.64819 1.13158e-06 0.13173
GO:0048519 negative regulation of biological process : biological_process 37 15.9239 1.46842e-06 0.170942
GO:0007167 enzyme linked receptor protein signaling pathway : biological_process 17 4.29064 1.65764e-06 0.19297
GO:0004714 transmembrane receptor protein tyrosine kinase activity : molecular_function 8 0.855573 2.1587e-06 0.251298
GO:0048869 cellular developmental process : biological_process 37 16.3964 2.90434e-06 0.3381
GO:0030182 neuron differentiation : biological_process 14 3.11582 3.30292e-06 0.384499
GO:0009888 tissue development : biological_process 16 4.17571 5.16138e-06 0.600846
GO:0042613 MHC class II protein complex : cellular_component 4 0.140467 7.98962e-06 0.930087
GO:0031175 neurite development : biological_process 11 2.13255 1.03853e-05 1
GO:0019199 transmembrane receptor protein kinase activity : molecular_function 8 1.05989 1.095e-05 1
GO:0004871 signal transducer activity : molecular_function 44 22.5003 1.24093e-05 1
GO:0060089 molecular transducer activity : molecular_function 44 22.5003 1.24093e-05 1
GO:0050793 regulation of developmental process : biological_process 27 10.8926 1.40904e-05 1
GO:0001657 ureteric bud development : biological_process 5 0.344783 2.09535e-05 1
GO:0009790 embryonic development : biological_process 15 4.20125 2.34097e-05 1
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II : biological_process 4 0.178776 2.35133e-05 1
GO:0042325 regulation of phosphorylation : biological_process 8 1.23867 3.44099e-05 1
GO:0002376 immune system process : biological_process 26 10.8415 3.58336e-05 1
GO:0000904 cell morphogenesis involved in differentiation : biological_process 10 2.03039 3.90361e-05 1
GO:0001932 regulation of protein amino acid phosphorylation : biological_process 7 0.944961 4.43167e-05 1
GO:0009887 organ morphogenesis : biological_process 17 5.55484 4.78001e-05 1
GO:0007267 cell-cell signaling : biological_process 20 7.3043 4.97293e-05 1
GO:0019220 regulation of phosphate metabolic process : biological_process 8 1.31528 5.30093e-05 1
GO:0051174 regulation of phosphorus metabolic process : biological_process 8 1.31528 5.30093e-05 1
GO:0005003 ephrin receptor activity : molecular_function 4 0.217086 5.42427e-05 1
GO:0007409 axonogenesis : biological_process 9 1.74946 6.79321e-05 1
GO:0009605 response to external stimulus : biological_process 21 8.12156 7.29892e-05 1
GO:0048729 tissue morphogenesis : biological_process 7 1.02158 7.33113e-05 1
GO:0008544 epidermis development : biological_process 9 1.78776 8.03361e-05 1
GO:0032268 regulation of cellular protein metabolic process : biological_process 13 3.63938 8.16538e-05 1
GO:0048730 epidermis morphogenesis : biological_process 6 0.727876 8.60499e-05 1
GO:0001656 metanephros development : biological_process 5 0.459711 8.909e-05 1
GO:0048812 neurite morphogenesis : biological_process 9 1.83884 9.97893e-05 1
GO:0048667 cell morphogenesis involved in neuron differentiation : biological_process 9 1.83884 9.97893e-05 1

MSC rank products repressed

id name genes expect P adj P
GO:0005578 proteinaceous extracellular matrix : cellular_component 5 0.456147 8.34973e-05 1

MSC rank products induced

id name genes expect P adj P
GO:0005576 extracellular region : cellular_component 23 7.85508 1.95291e-06 0.227342
GO:0005887 integral to plasma membrane : cellular_component 18 5.1031 2.51755e-06 0.293073
GO:0031226 intrinsic to plasma membrane : cellular_component 18 5.16616 2.9922e-06 0.348328
GO:0007399 nervous system development : biological_process 14 3.26544 4.28586e-06 0.498925
GO:0048731 system development : biological_process 22 7.72896 5.47141e-06 0.636937
GO:0048869 cellular developmental process : biological_process 18 5.78321 1.41663e-05 1
GO:0030154 cell differentiation : biological_process 17 5.26975 1.61311e-05 1
GO:0009888 tissue development : biological_process 9 1.47283 1.66994e-05 1
GO:0045608 negative regulation of auditory receptor cell differentiation : biological_process 2 0.00900812 2.00646e-05 1
GO:0045632 negative regulation of mechanoreceptor differentiation : biological_process 2 0.00900812 2.00646e-05 1
GO:0007417 central nervous system development : biological_process 8 1.16655 2.22183e-05 1
GO:0044459 plasma membrane part : cellular_component 21 7.8776 2.54135e-05 1
GO:0007166 cell surface receptor linked signal transduction : biological_process 18 6.41378 5.58187e-05 1
GO:0045631 regulation of mechanoreceptor differentiation : biological_process 2 0.0135122 6.0017e-05 1
GO:0045607 regulation of auditory receptor cell differentiation : biological_process 2 0.0135122 6.0017e-05 1
GO:0060113 inner ear receptor cell differentiation : biological_process 3 0.0810731 6.86791e-05 1
GO:0042490 mechanoreceptor differentiation : biological_process 3 0.0900812 9.53246e-05 1
GO:0048518 positive regulation of biological process : biological_process 16 5.48144 9.77428e-05 1

MSCs batch 1 repressed and GO:0007067: 26 genes, expected 5.61453, P=8.42571e-11, P adjusted = 9.80853e-06
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
54443 ANLN anillin, actin binding protein
1906 EDN1 endothelin 1
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
10615 SPAG5 sperm associated antigen 5
55165 CEP55 centrosomal protein 55kDa
11004 KIF2C kinesin family member 2C
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
9133 CCNB2 cyclin B2
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
64151 NCAPG non-SMC condensin I complex, subunit G
983 CDC2 cell division cycle 2, G1 to S and G2 to M
55872 PBK PDZ binding kinase
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0000087: 26 genes, expected 5.66878, P=1.04558e-10, P adjusted = 1.21718e-05
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
54443 ANLN anillin, actin binding protein
1906 EDN1 endothelin 1
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
10615 SPAG5 sperm associated antigen 5
55165 CEP55 centrosomal protein 55kDa
11004 KIF2C kinesin family member 2C
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
9133 CCNB2 cyclin B2
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
64151 NCAPG non-SMC condensin I complex, subunit G
983 CDC2 cell division cycle 2, G1 to S and G2 to M
55872 PBK PDZ binding kinase
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0005975: 38 genes, expected 11.663, P=1.82828e-10, P adjusted = 2.12834e-05
1301 COL11A1 collagen, type XI, alpha 1
5163 PDK1 pyruvate dehydrogenase kinase, isozyme 1
226 ALDOA aldolase A, fructose-bisphosphate
5106 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial)
51148 CERCAM cerebral endothelial cell adhesion molecule
6518 SLC2A5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5
8707 B3GALT2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
114898 C1QTNF2 C1q and tumor necrosis factor related protein 2
5230 PGK1 phosphoglycerate kinase 1
176 ACAN aggrecan
5210 PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
3425 IDUA iduronidase, alpha-L-
5214 PFKP phosphofructokinase, platelet
54344 DPM3 dolichyl-phosphate mannosyltransferase polypeptide 3
2132 EXT2 exostoses (multiple) 2
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
5165 PDK3 pyruvate dehydrogenase kinase, isozyme 3
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
203054 ADCK5 aarF domain containing kinase 5
4351 MPI mannose phosphate isomerase
3418 IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial
5372 PMM1 phosphomannomutase 1
3421 IDH3G isocitrate dehydrogenase 3 (NAD+) gamma
8574 AKR7A2 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)
4668 NAGA N-acetylgalactosaminidase, alpha-
2026 ENO2 enolase 2 (gamma, neuronal)
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
3038 HAS3 hyaluronan synthase 3
2582 GALE UDP-galactose-4-epimerase
11285 B4GALT7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
2997 GYS1 glycogen synthase 1 (muscle)
230 ALDOC aldolase C, fructose-bisphosphate
6483 ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2
55501 CHST12 carbohydrate (chondroitin 4) sulfotransferase 12


MSCs batch 1 repressed and GO:0044420: 16 genes, expected 2.33261, P=1.15636e-09, P adjusted = 0.000134614
1301 COL11A1 collagen, type XI, alpha 1
1284 COL4A2 collagen, type IV, alpha 2
2200 FBN1 fibrillin 1
4015 LOX lysyl oxidase
1307 COL16A1 collagen, type XVI, alpha 1
176 ACAN aggrecan
3339 HSPG2 heparan sulfate proteoglycan 2
1303 COL12A1 collagen, type XII, alpha 1
8076 MFAP5 microfibrillar associated protein 5
30008 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2
7078 TIMP3 TIMP metallopeptidase inhibitor 3
283 ANG angiogenin, ribonuclease, RNase A family, 5
222663 SCUBE3 signal peptide, CUB domain, EGF-like 3
1300 COL10A1 collagen, type X, alpha 1
3908 LAMA2 laminin, alpha 2
4237 MFAP2 microfibrillar-associated protein 2


MSCs batch 1 repressed and GO:0022403: 33 genes, expected 9.79153, P=1.26238e-09, P adjusted = 0.000146956
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
7272 TTK TTK protein kinase
54443 ANLN anillin, actin binding protein
7164 TPD52L1 tumor protein D52-like 1
1906 EDN1 endothelin 1
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
10615 SPAG5 sperm associated antigen 5
55165 CEP55 centrosomal protein 55kDa
8558 CDK10 cyclin-dependent kinase 10
9055 PRC1 protein regulator of cytokinesis 1
1033 CDKN3 cyclin-dependent kinase inhibitor 3
11004 KIF2C kinesin family member 2C
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
9133 CCNB2 cyclin B2
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
64151 NCAPG non-SMC condensin I complex, subunit G
983 CDC2 cell division cycle 2, G1 to S and G2 to M
55872 PBK PDZ binding kinase
3855 KRT7 keratin 7
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
595 CCND1 cyclin D1
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0044262: 29 genes, expected 7.81152, P=1.42094e-09, P adjusted = 0.000165415
1301 COL11A1 collagen, type XI, alpha 1
5163 PDK1 pyruvate dehydrogenase kinase, isozyme 1
226 ALDOA aldolase A, fructose-bisphosphate
5106 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial)
51148 CERCAM cerebral endothelial cell adhesion molecule
114898 C1QTNF2 C1q and tumor necrosis factor related protein 2
5230 PGK1 phosphoglycerate kinase 1
176 ACAN aggrecan
5210 PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
3425 IDUA iduronidase, alpha-L-
5214 PFKP phosphofructokinase, platelet
2132 EXT2 exostoses (multiple) 2
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
5165 PDK3 pyruvate dehydrogenase kinase, isozyme 3
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
3418 IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial
5372 PMM1 phosphomannomutase 1
2026 ENO2 enolase 2 (gamma, neuronal)
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
2582 GALE UDP-galactose-4-epimerase
11285 B4GALT7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
2997 GYS1 glycogen synthase 1 (muscle)
230 ALDOC aldolase C, fructose-bisphosphate
6483 ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2
55501 CHST12 carbohydrate (chondroitin 4) sulfotransferase 12


MSCs batch 1 repressed and GO:0000278: 33 genes, expected 9.95427, P=1.91723e-09, P adjusted = 0.000223188
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
440 ASNS asparagine synthetase
7272 TTK TTK protein kinase
54443 ANLN anillin, actin binding protein
7164 TPD52L1 tumor protein D52-like 1
1906 EDN1 endothelin 1
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
10615 SPAG5 sperm associated antigen 5
55165 CEP55 centrosomal protein 55kDa
8558 CDK10 cyclin-dependent kinase 10
9055 PRC1 protein regulator of cytokinesis 1
1033 CDKN3 cyclin-dependent kinase inhibitor 3
11004 KIF2C kinesin family member 2C
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
9133 CCNB2 cyclin B2
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
64151 NCAPG non-SMC condensin I complex, subunit G
983 CDC2 cell division cycle 2, G1 to S and G2 to M
55872 PBK PDZ binding kinase
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
595 CCND1 cyclin D1
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0051301: 25 genes, expected 6.37399, P=6.41684e-09, P adjusted = 0.000746997
4628 MYH10 myosin, heavy chain 10, non-muscle
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
54443 ANLN anillin, actin binding protein
55909 BIN3 bridging integrator 3
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
10615 SPAG5 sperm associated antigen 5
55165 CEP55 centrosomal protein 55kDa
9055 PRC1 protein regulator of cytokinesis 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
9133 CCNB2 cyclin B2
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
64151 NCAPG non-SMC condensin I complex, subunit G
983 CDC2 cell division cycle 2, G1 to S and G2 to M
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
595 CCND1 cyclin D1
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0000279: 28 genes, expected 7.86577, P=6.97067e-09, P adjusted = 0.00081147
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
7272 TTK TTK protein kinase
54443 ANLN anillin, actin binding protein
1906 EDN1 endothelin 1
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
10615 SPAG5 sperm associated antigen 5
55165 CEP55 centrosomal protein 55kDa
9055 PRC1 protein regulator of cytokinesis 1
11004 KIF2C kinesin family member 2C
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
9133 CCNB2 cyclin B2
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
64151 NCAPG non-SMC condensin I complex, subunit G
983 CDC2 cell division cycle 2, G1 to S and G2 to M
55872 PBK PDZ binding kinase
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0022402: 35 genes, expected 13.2091, P=1.82919e-07, P adjusted = 0.021294
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
4628 MYH10 myosin, heavy chain 10, non-muscle
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
6300 MAPK12 mitogen-activated protein kinase 12
7272 TTK TTK protein kinase
54443 ANLN anillin, actin binding protein
7164 TPD52L1 tumor protein D52-like 1
1906 EDN1 endothelin 1
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
10615 SPAG5 sperm associated antigen 5
55165 CEP55 centrosomal protein 55kDa
8558 CDK10 cyclin-dependent kinase 10
9055 PRC1 protein regulator of cytokinesis 1
1033 CDKN3 cyclin-dependent kinase inhibitor 3
11004 KIF2C kinesin family member 2C
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
9133 CCNB2 cyclin B2
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
64151 NCAPG non-SMC condensin I complex, subunit G
983 CDC2 cell division cycle 2, G1 to S and G2 to M
55872 PBK PDZ binding kinase
3855 KRT7 keratin 7
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
595 CCND1 cyclin D1
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0006091: 25 genes, expected 7.62166, P=2.19383e-07, P adjusted = 0.0255388
226 ALDOA aldolase A, fructose-bisphosphate
10873 ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial
114898 C1QTNF2 C1q and tumor necrosis factor related protein 2
5230 PGK1 phosphoglycerate kinase 1
5214 PFKP phosphofructokinase, platelet
4776 NFATC4 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4
4713 NDUFB7 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa
4714 NDUFB8 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa
55937 APOM apolipoprotein M
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
513 ATP5D ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
9605 C16orf7 chromosome 16 open reading frame 7
1535 CYBA cytochrome b-245, alpha polypeptide
3418 IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial
3421 IDH3G isocitrate dehydrogenase 3 (NAD+) gamma
2026 ENO2 enolase 2 (gamma, neuronal)
3995 FADS3 fatty acid desaturase 3
374291 NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)
2997 GYS1 glycogen synthase 1 (muscle)
230 ALDOC aldolase C, fructose-bisphosphate
7384 UQCRC1 ubiquinol-cytochrome c reductase core protein I


MSCs batch 1 repressed and GO:0005856: 62 genes, expected 31.436, P=2.47573e-07, P adjusted = 0.0288204
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
10112 KIF20A kinesin family member 20A
9814 SFI1 Sfi1 homolog, spindle assembly associated (yeast)
4628 MYH10 myosin, heavy chain 10, non-muscle
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
57153 SLC44A2 solute carrier family 44, member 2
23265 EXOC7 exocyst complex component 7
59 ACTA2 actin, alpha 2, smooth muscle, aorta
3883 KRT33A keratin 33A
89796 NAV1 neuron navigator 1
26502 NARF nuclear prelamin A recognition factor
822 CAPG capping protein (actin filament), gelsolin-like
7272 TTK TTK protein kinase
5411 PNN pinin, desmosome associated protein
54443 ANLN anillin, actin binding protein
6444 SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)
51778 MYOZ2 myozenin 2
6640 SNTA1 syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)
6676 SPAG4 sperm associated antigen 4
10460 TACC3 transforming, acidic coiled-coil containing protein 3
57175 CORO1B coronin, actin binding protein, 1B
55909 BIN3 bridging integrator 3
10615 SPAG5 sperm associated antigen 5
11344 TWF2 twinfilin, actin-binding protein, homolog 2 (Drosophila)
4000 LMNA lamin A/C
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
2316 FLNA filamin A, alpha (actin binding protein 280)
9055 PRC1 protein regulator of cytokinesis 1
25802 LMOD1 leiomodin 1 (smooth muscle)
51466 EVL Enah/Vasp-like
7263 TST thiosulfate sulfurtransferase (rhodanese)
6509 SLC1A4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
4644 MYO5A myosin VA (heavy chain 12, myoxin)
11004 KIF2C kinesin family member 2C
3885 KRT34 keratin 34
332 BIRC5 baculoviral IAP repeat-containing 5
91978 C19orf20 chromosome 19 open reading frame 20
5531 PPP4C protein phosphatase 4 (formerly X), catalytic subunit
4641 MYO1C myosin IC
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
2312 FLG filaggrin
9133 CCNB2 cyclin B2
4134 MAP4 microtubule-associated protein 4
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
11078 TRIOBP TRIO and F-actin binding protein
3315 HSPB1 heat shock 27kDa protein 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
3855 KRT7 keratin 7
55742 PARVA parvin, alpha
7430 EZR ezrin
800 CALD1 caldesmon 1
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
148170 CDC42EP5 CDC42 effector protein (Rho GTPase binding) 5
10160 FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
10398 MYL9 myosin, light chain 9, regulatory
64236 PDLIM2 PDZ and LIM domain 2 (mystique)


MSCs batch 1 repressed and GO:0019318: 17 genes, expected 3.87864, P=3.52892e-07, P adjusted = 0.0410808
5163 PDK1 pyruvate dehydrogenase kinase, isozyme 1
226 ALDOA aldolase A, fructose-bisphosphate
5106 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial)
5230 PGK1 phosphoglycerate kinase 1
5210 PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
5165 PDK3 pyruvate dehydrogenase kinase, isozyme 3
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
5372 PMM1 phosphomannomutase 1
2026 ENO2 enolase 2 (gamma, neuronal)
2582 GALE UDP-galactose-4-epimerase
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0007049: 48 genes, expected 22.214, P=4.88295e-07, P adjusted = 0.0568434
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
4628 MYH10 myosin, heavy chain 10, non-muscle
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
440 ASNS asparagine synthetase
6300 MAPK12 mitogen-activated protein kinase 12
4288 MKI67 antigen identified by monoclonal antibody Ki-67
4176 MCM7 minichromosome maintenance complex component 7
55215 FANCI Fanconi anemia, complementation group I
7272 TTK TTK protein kinase
5411 PNN pinin, desmosome associated protein
1841 DTYMK deoxythymidylate kinase (thymidylate kinase)
54443 ANLN anillin, actin binding protein
10460 TACC3 transforming, acidic coiled-coil containing protein 3
7164 TPD52L1 tumor protein D52-like 1
1906 EDN1 endothelin 1
55909 BIN3 bridging integrator 3
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
10615 SPAG5 sperm associated antigen 5
55165 CEP55 centrosomal protein 55kDa
2132 EXT2 exostoses (multiple) 2
8558 CDK10 cyclin-dependent kinase 10
9055 PRC1 protein regulator of cytokinesis 1
64975 MRPL41 mitochondrial ribosomal protein L41
112464 PRKCDBP protein kinase C, delta binding protein
1033 CDKN3 cyclin-dependent kinase inhibitor 3
11004 KIF2C kinesin family member 2C
29108 PYCARD PYD and CARD domain containing
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
9133 CCNB2 cyclin B2
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
64151 NCAPG non-SMC condensin I complex, subunit G
983 CDC2 cell division cycle 2, G1 to S and G2 to M
55872 PBK PDZ binding kinase
3855 KRT7 keratin 7
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
595 CCND1 cyclin D1
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0006007: 11 genes, expected 1.6274, P=5.43991e-07, P adjusted = 0.0633271
226 ALDOA aldolase A, fructose-bisphosphate
5230 PGK1 phosphoglycerate kinase 1
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
2026 ENO2 enolase 2 (gamma, neuronal)
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0005996: 17 genes, expected 4.01425, P=5.78354e-07, P adjusted = 0.0673273
5163 PDK1 pyruvate dehydrogenase kinase, isozyme 1
226 ALDOA aldolase A, fructose-bisphosphate
5106 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial)
5230 PGK1 phosphoglycerate kinase 1
5210 PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
5165 PDK3 pyruvate dehydrogenase kinase, isozyme 3
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
5372 PMM1 phosphomannomutase 1
2026 ENO2 enolase 2 (gamma, neuronal)
2582 GALE UDP-galactose-4-epimerase
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0005576: 82 genes, expected 47.3031, P=5.91648e-07, P adjusted = 0.0688749
147015 DHRS13 dehydrogenase/reductase (SDR family) member 13
3625 INHBB inhibin, beta B
1301 COL11A1 collagen, type XI, alpha 1
11341 SCRG1 scrapie responsive protein 1
1284 COL4A2 collagen, type IV, alpha 2
2200 FBN1 fibrillin 1
57493 HEG1 HEG homolog 1 (zebrafish)
114898 C1QTNF2 C1q and tumor necrosis factor related protein 2
3486 IGFBP3 insulin-like growth factor binding protein 3
4015 LOX lysyl oxidase
4016 LOXL1 lysyl oxidase-like 1
1307 COL16A1 collagen, type XVI, alpha 1
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
151887 CCDC80 coiled-coil domain containing 80
3339 HSPG2 heparan sulfate proteoglycan 2
4017 LOXL2 lysyl oxidase-like 2
5605 MAP2K2 mitogen-activated protein kinase kinase 2
1303 COL12A1 collagen, type XII, alpha 1
4282 MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
147372 CCBE1 collagen and calcium binding EGF domains 1
8076 MFAP5 microfibrillar associated protein 5
2202 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1
1906 EDN1 endothelin 1
7059 THBS3 thrombospondin 3
6038 RNASE4 ribonuclease, RNase A family, 4
2817 GPC1 glypican 1
633 BGN biglycan
30008 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2
3485 IGFBP2 insulin-like growth factor binding protein 2, 36kDa
5125 PCSK5 proprotein convertase subtilisin/kexin type 5
55937 APOM apolipoprotein M
7078 TIMP3 TIMP metallopeptidase inhibitor 3
283 ANG angiogenin, ribonuclease, RNase A family, 5
4684 NCAM1 neural cell adhesion molecule 1
5552 SRGN serglycin
6050 RNH1 ribonuclease/angiogenin inhibitor 1
3381 IBSP integrin-binding sialoprotein
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
56944 OLFML3 olfactomedin-like 3
3575 IL7R interleukin 7 receptor
29108 PYCARD PYD and CARD domain containing
51368 TEX264 testis expressed 264
1292 COL6A2 collagen, type VI, alpha 2
2821 GPI glucose phosphate isomerase
222663 SCUBE3 signal peptide, CUB domain, EGF-like 3
976 CD97 CD97 molecule
4582 MUC1 mucin 1, cell surface associated
114990 VASN vasorin
26227 PHGDH phosphoglycerate dehydrogenase
84171 LOXL4 lysyl oxidase-like 4
1893 ECM1 extracellular matrix protein 1
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
3084 NRG1 neuregulin 1
56005 C19orf10 chromosome 19 open reading frame 10
2621 GAS6 growth arrest-specific 6
7423 VEGFB vascular endothelial growth factor B
5764 PTN pleiotrophin
5118 PCOLCE procollagen C-endopeptidase enhancer
5034 P4HB procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide
8532 CPZ carboxypeptidase Z
25817 FAM19A5 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5
6781 STC1 stanniocalcin 1
3956 LGALS1 lectin, galactoside-binding, soluble, 1
1300 COL10A1 collagen, type X, alpha 1
5176 SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
84279 C2orf7 chromosome 2 open reading frame 7
8635 RNASET2 ribonuclease T2
6424 SFRP4 secreted frizzled-related protein 4
7057 THBS1 thrombospondin 1
6483 ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2
6051 RNPEP arginyl aminopeptidase (aminopeptidase B)
165 AEBP1 AE binding protein 1
3908 LAMA2 laminin, alpha 2
130574 LYPD6 LY6/PLAUR domain containing 6
4054 LTBP3 latent transforming growth factor beta binding protein 3
23383 KIAA0892 KIAA0892
710 SERPING1 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
4237 MFAP2 microfibrillar-associated protein 2
649 BMP1 bone morphogenetic protein 1


MSCs batch 1 repressed and GO:0005819: 13 genes, expected 2.35973, P=6.09523e-07, P adjusted = 0.0709558
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
7272 TTK TTK protein kinase
10615 SPAG5 sperm associated antigen 5
9055 PRC1 protein regulator of cytokinesis 1
332 BIRC5 baculoviral IAP repeat-containing 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
9928 KIF14 kinesin family member 14
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
1063 CENPF centromere protein F, 350/400ka (mitosin)
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
983 CDC2 cell division cycle 2, G1 to S and G2 to M
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)


MSCs batch 1 repressed and GO:0006096: 10 genes, expected 1.35617, P=7.68637e-07, P adjusted = 0.0894785
226 ALDOA aldolase A, fructose-bisphosphate
5230 PGK1 phosphoglycerate kinase 1
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
2026 ENO2 enolase 2 (gamma, neuronal)
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0031012: 25 genes, expected 8.16413, P=7.96737e-07, P adjusted = 0.0927497
1301 COL11A1 collagen, type XI, alpha 1
1284 COL4A2 collagen, type IV, alpha 2
2200 FBN1 fibrillin 1
4015 LOX lysyl oxidase
1307 COL16A1 collagen, type XVI, alpha 1
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
3339 HSPG2 heparan sulfate proteoglycan 2
1303 COL12A1 collagen, type XII, alpha 1
8076 MFAP5 microfibrillar associated protein 5
2202 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1
2817 GPC1 glypican 1
633 BGN biglycan
30008 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2
7078 TIMP3 TIMP metallopeptidase inhibitor 3
283 ANG angiogenin, ribonuclease, RNase A family, 5
1292 COL6A2 collagen, type VI, alpha 2
222663 SCUBE3 signal peptide, CUB domain, EGF-like 3
1893 ECM1 extracellular matrix protein 1
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
8532 CPZ carboxypeptidase Z
1300 COL10A1 collagen, type X, alpha 1
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
3908 LAMA2 laminin, alpha 2
4237 MFAP2 microfibrillar-associated protein 2


MSCs batch 1 repressed and GO:0007346: 14 genes, expected 2.84795, P=9.4254e-07, P adjusted = 0.109723
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
440 ASNS asparagine synthetase
7272 TTK TTK protein kinase
54443 ANLN anillin, actin binding protein
1906 EDN1 endothelin 1
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
8558 CDK10 cyclin-dependent kinase 10
332 BIRC5 baculoviral IAP repeat-containing 5
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
11065 UBE2C ubiquitin-conjugating enzyme E2C
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0000777: 9 genes, expected 1.08493, P=9.61085e-07, P adjusted = 0.111882
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
10615 SPAG5 sperm associated antigen 5
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
79019 CENPM centromere protein M
1063 CENPF centromere protein F, 350/400ka (mitosin)
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
80152 CENPT centromere protein T


MSCs batch 1 repressed and GO:0006006: 14 genes, expected 2.9022, P=1.18899e-06, P adjusted = 0.138412
5163 PDK1 pyruvate dehydrogenase kinase, isozyme 1
226 ALDOA aldolase A, fructose-bisphosphate
5106 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial)
5230 PGK1 phosphoglycerate kinase 1
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
5165 PDK3 pyruvate dehydrogenase kinase, isozyme 3
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
2026 ENO2 enolase 2 (gamma, neuronal)
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0000779: 9 genes, expected 1.11206, P=1.20201e-06, P adjusted = 0.139929
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
10615 SPAG5 sperm associated antigen 5
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
79019 CENPM centromere protein M
1063 CENPF centromere protein F, 350/400ka (mitosin)
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
80152 CENPT centromere protein T


MSCs batch 1 repressed and GO:0005578: 24 genes, expected 7.81152, P=1.24583e-06, P adjusted = 0.145029
1301 COL11A1 collagen, type XI, alpha 1
1284 COL4A2 collagen, type IV, alpha 2
2200 FBN1 fibrillin 1
4015 LOX lysyl oxidase
1307 COL16A1 collagen, type XVI, alpha 1
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
3339 HSPG2 heparan sulfate proteoglycan 2
1303 COL12A1 collagen, type XII, alpha 1
8076 MFAP5 microfibrillar associated protein 5
2202 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1
2817 GPC1 glypican 1
633 BGN biglycan
30008 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2
7078 TIMP3 TIMP metallopeptidase inhibitor 3
283 ANG angiogenin, ribonuclease, RNase A family, 5
1292 COL6A2 collagen, type VI, alpha 2
1893 ECM1 extracellular matrix protein 1
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
8532 CPZ carboxypeptidase Z
1300 COL10A1 collagen, type X, alpha 1
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
3908 LAMA2 laminin, alpha 2
4237 MFAP2 microfibrillar-associated protein 2


MSCs batch 1 repressed and GO:0008652: 9 genes, expected 1.13918, P=1.49334e-06, P adjusted = 0.173843
440 ASNS asparagine synthetase
587 BCAT2 branched chain aminotransferase 2, mitochondrial
29968 PSAT1 phosphoserine aminotransferase 1
875 CBS cystathionine-beta-synthase
26227 PHGDH phosphoglycerate dehydrogenase
65263 PYCRL pyrroline-5-carboxylate reductase-like
435 ASL argininosuccinate lyase
5351 PLOD1 procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1
5831 PYCR1 pyrroline-5-carboxylate reductase 1


MSCs batch 1 repressed and GO:0019320: 11 genes, expected 1.87151, P=2.32247e-06, P adjusted = 0.270364
226 ALDOA aldolase A, fructose-bisphosphate
5230 PGK1 phosphoglycerate kinase 1
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
2026 ENO2 enolase 2 (gamma, neuronal)
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0004720: 4 genes, expected 0.135617, P=2.61968e-06, P adjusted = 0.304962
4015 LOX lysyl oxidase
4016 LOXL1 lysyl oxidase-like 1
4017 LOXL2 lysyl oxidase-like 2
84171 LOXL4 lysyl oxidase-like 4


MSCs batch 1 repressed and GO:0046365: 11 genes, expected 1.89863, P=2.68888e-06, P adjusted = 0.313018
226 ALDOA aldolase A, fructose-bisphosphate
5230 PGK1 phosphoglycerate kinase 1
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
2026 ENO2 enolase 2 (gamma, neuronal)
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0044430: 42 genes, expected 19.5017, P=2.82694e-06, P adjusted = 0.32909
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
10112 KIF20A kinesin family member 20A
9814 SFI1 Sfi1 homolog, spindle assembly associated (yeast)
4628 MYH10 myosin, heavy chain 10, non-muscle
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
57153 SLC44A2 solute carrier family 44, member 2
23265 EXOC7 exocyst complex component 7
3883 KRT33A keratin 33A
89796 NAV1 neuron navigator 1
26502 NARF nuclear prelamin A recognition factor
822 CAPG capping protein (actin filament), gelsolin-like
7272 TTK TTK protein kinase
5411 PNN pinin, desmosome associated protein
54443 ANLN anillin, actin binding protein
10460 TACC3 transforming, acidic coiled-coil containing protein 3
10615 SPAG5 sperm associated antigen 5
4000 LMNA lamin A/C
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9055 PRC1 protein regulator of cytokinesis 1
6509 SLC1A4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
4644 MYO5A myosin VA (heavy chain 12, myoxin)
11004 KIF2C kinesin family member 2C
3885 KRT34 keratin 34
332 BIRC5 baculoviral IAP repeat-containing 5
91978 C19orf20 chromosome 19 open reading frame 20
5531 PPP4C protein phosphatase 4 (formerly X), catalytic subunit
4641 MYO1C myosin IC
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
2312 FLG filaggrin
4134 MAP4 microtubule-associated protein 4
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
3855 KRT7 keratin 7
7430 EZR ezrin
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
10398 MYL9 myosin, light chain 9, regulatory


MSCs batch 1 repressed and GO:0032395: 5 genes, expected 0.271233, P=3.24524e-06, P adjusted = 0.377785
3126 HLA-DRB4 major histocompatibility complex, class II, DR beta 4
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
3108 HLA-DMA major histocompatibility complex, class II, DM alpha
3122 HLA-DRA major histocompatibility complex, class II, DR alpha


MSCs batch 1 repressed and GO:0046164: 11 genes, expected 2.00713, P=4.71001e-06, P adjusted = 0.548302
226 ALDOA aldolase A, fructose-bisphosphate
5230 PGK1 phosphoglycerate kinase 1
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
2026 ENO2 enolase 2 (gamma, neuronal)
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0044421: 42 genes, expected 20.0441, P=5.58369e-06, P adjusted = 0.650009
1301 COL11A1 collagen, type XI, alpha 1
11341 SCRG1 scrapie responsive protein 1
1284 COL4A2 collagen, type IV, alpha 2
2200 FBN1 fibrillin 1
114898 C1QTNF2 C1q and tumor necrosis factor related protein 2
3486 IGFBP3 insulin-like growth factor binding protein 3
4015 LOX lysyl oxidase
1307 COL16A1 collagen, type XVI, alpha 1
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
3339 HSPG2 heparan sulfate proteoglycan 2
4017 LOXL2 lysyl oxidase-like 2
1303 COL12A1 collagen, type XII, alpha 1
4282 MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
8076 MFAP5 microfibrillar associated protein 5
2202 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1
1906 EDN1 endothelin 1
2817 GPC1 glypican 1
633 BGN biglycan
30008 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2
3485 IGFBP2 insulin-like growth factor binding protein 2, 36kDa
5125 PCSK5 proprotein convertase subtilisin/kexin type 5
7078 TIMP3 TIMP metallopeptidase inhibitor 3
283 ANG angiogenin, ribonuclease, RNase A family, 5
5552 SRGN serglycin
6050 RNH1 ribonuclease/angiogenin inhibitor 1
1292 COL6A2 collagen, type VI, alpha 2
2821 GPI glucose phosphate isomerase
222663 SCUBE3 signal peptide, CUB domain, EGF-like 3
1893 ECM1 extracellular matrix protein 1
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
5764 PTN pleiotrophin
8532 CPZ carboxypeptidase Z
6781 STC1 stanniocalcin 1
3956 LGALS1 lectin, galactoside-binding, soluble, 1
1300 COL10A1 collagen, type X, alpha 1
5176 SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
6424 SFRP4 secreted frizzled-related protein 4
3908 LAMA2 laminin, alpha 2
4237 MFAP2 microfibrillar-associated protein 2
649 BMP1 bone morphogenetic protein 1


MSCs batch 1 repressed and GO:0042613: 5 genes, expected 0.298357, P=5.81674e-06, P adjusted = 0.677138
3126 HLA-DRB4 major histocompatibility complex, class II, DR beta 4
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
3108 HLA-DMA major histocompatibility complex, class II, DM alpha
3122 HLA-DRA major histocompatibility complex, class II, DR alpha


MSCs batch 1 repressed and GO:0007155: 41 genes, expected 19.5559, P=7.13873e-06, P adjusted = 0.831034
1301 COL11A1 collagen, type XI, alpha 1
3679 ITGA7 integrin, alpha 7
58494 JAM2 junctional adhesion molecule 2
51148 CERCAM cerebral endothelial cell adhesion molecule
6275 S100A4 S100 calcium binding protein A4
1307 COL16A1 collagen, type XVI, alpha 1
176 ACAN aggrecan
3339 HSPG2 heparan sulfate proteoglycan 2
4017 LOXL2 lysyl oxidase-like 2
1303 COL12A1 collagen, type XII, alpha 1
5411 PNN pinin, desmosome associated protein
3678 ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
7059 THBS3 thrombospondin 3
7070 THY1 Thy-1 cell surface antigen
2022 ENG endoglin
23114 NFASC neurofascin homolog (chicken)
3689 ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
4685 NCAM2 neural cell adhesion molecule 2
4684 NCAM1 neural cell adhesion molecule 1
3381 IBSP integrin-binding sialoprotein
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
1292 COL6A2 collagen, type VI, alpha 2
976 CD97 CD97 molecule
948 CD36 CD36 molecule (thrombospondin receptor)
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
58986 TMEM8 transmembrane protein 8 (five membrane-spanning domains)
977 CD151 CD151 molecule (Raph blood group)
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
9379 NRXN2 neurexin 2
5792 PTPRF protein tyrosine phosphatase, receptor type, F
8515 ITGA10 integrin, alpha 10
3675 ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
55742 PARVA parvin, alpha
7430 EZR ezrin
5819 PVRL2 poliovirus receptor-related 2 (herpesvirus entry mediator B)
57575 PCDH10 protocadherin 10
7057 THBS1 thrombospondin 1
165 AEBP1 AE binding protein 1
3908 LAMA2 laminin, alpha 2
22801 ITGA11 integrin, alpha 11
649 BMP1 bone morphogenetic protein 1


MSCs batch 1 repressed and GO:0022610: 41 genes, expected 19.5559, P=7.13873e-06, P adjusted = 0.831034
1301 COL11A1 collagen, type XI, alpha 1
3679 ITGA7 integrin, alpha 7
58494 JAM2 junctional adhesion molecule 2
51148 CERCAM cerebral endothelial cell adhesion molecule
6275 S100A4 S100 calcium binding protein A4
1307 COL16A1 collagen, type XVI, alpha 1
176 ACAN aggrecan
3339 HSPG2 heparan sulfate proteoglycan 2
4017 LOXL2 lysyl oxidase-like 2
1303 COL12A1 collagen, type XII, alpha 1
5411 PNN pinin, desmosome associated protein
3678 ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
7059 THBS3 thrombospondin 3
7070 THY1 Thy-1 cell surface antigen
2022 ENG endoglin
23114 NFASC neurofascin homolog (chicken)
3689 ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
4685 NCAM2 neural cell adhesion molecule 2
4684 NCAM1 neural cell adhesion molecule 1
3381 IBSP integrin-binding sialoprotein
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
1292 COL6A2 collagen, type VI, alpha 2
976 CD97 CD97 molecule
948 CD36 CD36 molecule (thrombospondin receptor)
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
58986 TMEM8 transmembrane protein 8 (five membrane-spanning domains)
977 CD151 CD151 molecule (Raph blood group)
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
9379 NRXN2 neurexin 2
5792 PTPRF protein tyrosine phosphatase, receptor type, F
8515 ITGA10 integrin, alpha 10
3675 ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
55742 PARVA parvin, alpha
7430 EZR ezrin
5819 PVRL2 poliovirus receptor-related 2 (herpesvirus entry mediator B)
57575 PCDH10 protocadherin 10
7057 THBS1 thrombospondin 1
165 AEBP1 AE binding protein 1
3908 LAMA2 laminin, alpha 2
22801 ITGA11 integrin, alpha 11
649 BMP1 bone morphogenetic protein 1


MSCs batch 1 repressed and GO:0008305: 7 genes, expected 0.759454, P=7.49842e-06, P adjusted = 0.872906
3679 ITGA7 integrin, alpha 7
3678 ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
3689 ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
8515 ITGA10 integrin, alpha 10
3675 ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
22801 ITGA11 integrin, alpha 11


MSCs batch 1 repressed and GO:0005198: 38 genes, expected 17.5759, P=7.77226e-06, P adjusted = 0.904784
1301 COL11A1 collagen, type XI, alpha 1
6193 RPS5 ribosomal protein S5
1284 COL4A2 collagen, type IV, alpha 2
2200 FBN1 fibrillin 1
6159 RPL29 ribosomal protein L29
6137 RPL13 ribosomal protein L13
59 ACTA2 actin, alpha 2, smooth muscle, aorta
3883 KRT33A keratin 33A
1307 COL16A1 collagen, type XVI, alpha 1
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
5411 PNN pinin, desmosome associated protein
51778 MYOZ2 myozenin 2
6203 RPS9 ribosomal protein S9
8076 MFAP5 microfibrillar associated protein 5
6676 SPAG4 sperm associated antigen 4
7059 THBS3 thrombospondin 3
633 BGN biglycan
30008 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2
4000 LMNA lamin A/C
64975 MRPL41 mitochondrial ribosomal protein L41
6150 MRPL23 mitochondrial ribosomal protein L23
3885 KRT34 keratin 34
1292 COL6A2 collagen, type VI, alpha 2
2312 FLG filaggrin
8218 CLTCL1 clathrin, heavy chain-like 1
4134 MAP4 microtubule-associated protein 4
1300 COL10A1 collagen, type X, alpha 1
3855 KRT7 keratin 7
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
7430 EZR ezrin
7057 THBS1 thrombospondin 1
51073 MRPL4 mitochondrial ribosomal protein L4
6122 RPL3 ribosomal protein L3
11316 COPE coatomer protein complex, subunit epsilon
3908 LAMA2 laminin, alpha 2
10398 MYL9 myosin, light chain 9, regulatory


MSCs batch 1 repressed and GO:0044275: 12 genes, expected 2.52247, P=7.94351e-06, P adjusted = 0.92472
226 ALDOA aldolase A, fructose-bisphosphate
5230 PGK1 phosphoglycerate kinase 1
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
2026 ENO2 enolase 2 (gamma, neuronal)
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0015630: 30 genes, expected 12.5039, P=1.00837e-05, P adjusted = 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
10112 KIF20A kinesin family member 20A
9814 SFI1 Sfi1 homolog, spindle assembly associated (yeast)
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
57153 SLC44A2 solute carrier family 44, member 2
23265 EXOC7 exocyst complex component 7
89796 NAV1 neuron navigator 1
7272 TTK TTK protein kinase
10460 TACC3 transforming, acidic coiled-coil containing protein 3
10615 SPAG5 sperm associated antigen 5
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9055 PRC1 protein regulator of cytokinesis 1
4644 MYO5A myosin VA (heavy chain 12, myoxin)
11004 KIF2C kinesin family member 2C
332 BIRC5 baculoviral IAP repeat-containing 5
91978 C19orf20 chromosome 19 open reading frame 20
5531 PPP4C protein phosphatase 4 (formerly X), catalytic subunit
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
9133 CCNB2 cyclin B2
4134 MAP4 microtubule-associated protein 4
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7430 EZR ezrin
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)


MSCs batch 1 repressed and GO:0000776: 9 genes, expected 1.43754, P=1.1385e-05, P adjusted = 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
10615 SPAG5 sperm associated antigen 5
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
79019 CENPM centromere protein M
1063 CENPF centromere protein F, 350/400ka (mitosin)
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
80152 CENPT centromere protein T


MSCs batch 1 repressed and GO:0005201: 11 genes, expected 2.22411, P=1.29777e-05, P adjusted = 1
1301 COL11A1 collagen, type XI, alpha 1
1284 COL4A2 collagen, type IV, alpha 2
2200 FBN1 fibrillin 1
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
8076 MFAP5 microfibrillar associated protein 5
633 BGN biglycan
30008 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2
1292 COL6A2 collagen, type VI, alpha 2
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)


MSCs batch 1 repressed and GO:0045787: 7 genes, expected 0.840824, P=1.55179e-05, P adjusted = 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
440 ASNS asparagine synthetase
1906 EDN1 endothelin 1
332 BIRC5 baculoviral IAP repeat-containing 5
51203 NUSAP1 nucleolar and spindle associated protein 1
11065 UBE2C ubiquitin-conjugating enzyme E2C
595 CCND1 cyclin D1


MSCs batch 1 repressed and GO:0031577: 4 genes, expected 0.189863, P=1.75571e-05, P adjusted = 1
7272 TTK TTK protein kinase
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
1063 CENPF centromere protein F, 350/400ka (mitosin)


MSCs batch 1 repressed and GO:0007229: 9 genes, expected 1.51891, P=1.81074e-05, P adjusted = 1
3679 ITGA7 integrin, alpha 7
1307 COL16A1 collagen, type XVI, alpha 1
3678 ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
3689 ITGB2 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
8515 ITGA10 integrin, alpha 10
3675 ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
22801 ITGA11 integrin, alpha 11


MSCs batch 1 repressed and GO:0000775: 11 genes, expected 2.30548, P=1.83777e-05, P adjusted = 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
10615 SPAG5 sperm associated antigen 5
11004 KIF2C kinesin family member 2C
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
79019 CENPM centromere protein M
1063 CENPF centromere protein F, 350/400ka (mitosin)
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
80152 CENPT centromere protein T


MSCs batch 1 repressed and GO:0016052: 12 genes, expected 2.76658, P=2.06565e-05, P adjusted = 1
226 ALDOA aldolase A, fructose-bisphosphate
5230 PGK1 phosphoglycerate kinase 1
5214 PFKP phosphofructokinase, platelet
7167 TPI1 triosephosphate isomerase 1
2023 ENO1 enolase 1, (alpha)
5211 PFKL phosphofructokinase, liver
25796 PGLS 6-phosphogluconolactonase
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
2821 GPI glucose phosphate isomerase
2026 ENO2 enolase 2 (gamma, neuronal)
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
230 ALDOC aldolase C, fructose-bisphosphate


MSCs batch 1 repressed and GO:0016051: 12 genes, expected 2.7937, P=2.28142e-05, P adjusted = 1
5106 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial)
51148 CERCAM cerebral endothelial cell adhesion molecule
8707 B3GALT2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
114898 C1QTNF2 C1q and tumor necrosis factor related protein 2
176 ACAN aggrecan
2132 EXT2 exostoses (multiple) 2
7167 TPI1 triosephosphate isomerase 1
2821 GPI glucose phosphate isomerase
5372 PMM1 phosphomannomutase 1
11285 B4GALT7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
2997 GYS1 glycogen synthase 1 (muscle)
55501 CHST12 carbohydrate (chondroitin 4) sulfotransferase 12


MSCs batch 1 repressed and GO:0002504: 5 genes, expected 0.379727, P=2.35566e-05, P adjusted = 1
3126 HLA-DRB4 major histocompatibility complex, class II, DR beta 4
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
3108 HLA-DMA major histocompatibility complex, class II, DM alpha
3122 HLA-DRA major histocompatibility complex, class II, DR alpha


MSCs batch 1 repressed and GO:0048513: 60 genes, expected 34.745, P=2.53361e-05, P adjusted = 1
3778 KCNMA1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1
23363 OBSL1 obscurin-like 1
6876 TAGLN transgelin
3625 INHBB inhibin, beta B
1301 COL11A1 collagen, type XI, alpha 1
3679 ITGA7 integrin, alpha 7
10014 HDAC5 histone deacetylase 5
1284 COL4A2 collagen, type IV, alpha 2
2200 FBN1 fibrillin 1
6300 MAPK12 mitogen-activated protein kinase 12
5307 PITX1 paired-like homeodomain 1
3486 IGFBP3 insulin-like growth factor binding protein 3
290 ANPEP alanyl (membrane) aminopeptidase
4015 LOX lysyl oxidase
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
93185 IGSF8 immunoglobulin superfamily, member 8
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
6444 SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)
6640 SNTA1 syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)
10460 TACC3 transforming, acidic coiled-coil containing protein 3
1906 EDN1 endothelin 1
4776 NFATC4 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4
7070 THY1 Thy-1 cell surface antigen
2022 ENG endoglin
1948 EFNB2 ephrin-B2
2132 EXT2 exostoses (multiple) 2
5125 PCSK5 proprotein convertase subtilisin/kexin type 5
8613 PPAP2B phosphatidic acid phosphatase type 2B
283 ANG angiogenin, ribonuclease, RNase A family, 5
5552 SRGN serglycin
2067 ERCC1 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)
6050 RNH1 ribonuclease/angiogenin inhibitor 1
51466 EVL Enah/Vasp-like
3381 IBSP integrin-binding sialoprotein
1464 CSPG4 chondroitin sulfate proteoglycan 4
3575 IL7R interleukin 7 receptor
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
3885 KRT34 keratin 34
56033 BARX1 BARX homeobox 1
26227 PHGDH phosphoglycerate dehydrogenase
3108 HLA-DMA major histocompatibility complex, class II, DM alpha
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
3084 NRG1 neuregulin 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
5764 PTN pleiotrophin
4232 MEST mesoderm specific transcript homolog (mouse)
3956 LGALS1 lectin, galactoside-binding, soluble, 1
6604 SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
2273 FHL1 four and a half LIM domains 1
1300 COL10A1 collagen, type X, alpha 1
5176 SERPINF1 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
51196 PLCE1 phospholipase C, epsilon 1
2997 GYS1 glycogen synthase 1 (muscle)
5351 PLOD1 procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1
3908 LAMA2 laminin, alpha 2
4054 LTBP3 latent transforming growth factor beta binding protein 3
22801 ITGA11 integrin, alpha 11
649 BMP1 bone morphogenetic protein 1


MSCs batch 1 repressed and GO:0000226: 12 genes, expected 2.84795, P=2.77247e-05, P adjusted = 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
89796 NAV1 neuron navigator 1
7272 TTK TTK protein kinase
10615 SPAG5 sperm associated antigen 5
9055 PRC1 protein regulator of cytokinesis 1
11004 KIF2C kinesin family member 2C
91978 C19orf20 chromosome 19 open reading frame 20
5531 PPP4C protein phosphatase 4 (formerly X), catalytic subunit
51203 NUSAP1 nucleolar and spindle associated protein 1
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
4134 MAP4 microtubule-associated protein 4
11065 UBE2C ubiquitin-conjugating enzyme E2C


MSCs batch 1 repressed and GO:0006563: 4 genes, expected 0.216987, P=3.43597e-05, P adjusted = 1
6472 SHMT2 serine hydroxymethyltransferase 2 (mitochondrial)
29968 PSAT1 phosphoserine aminotransferase 1
875 CBS cystathionine-beta-synthase
26227 PHGDH phosphoglycerate dehydrogenase


MSCs batch 1 repressed and GO:0045840: 5 genes, expected 0.40685, P=3.45478e-05, P adjusted = 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
1906 EDN1 endothelin 1
332 BIRC5 baculoviral IAP repeat-containing 5
51203 NUSAP1 nucleolar and spindle associated protein 1
11065 UBE2C ubiquitin-conjugating enzyme E2C


MSCs batch 1 repressed and GO:0034637: 11 genes, expected 2.49535, P=3.90364e-05, P adjusted = 1
5106 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial)
51148 CERCAM cerebral endothelial cell adhesion molecule
114898 C1QTNF2 C1q and tumor necrosis factor related protein 2
176 ACAN aggrecan
2132 EXT2 exostoses (multiple) 2
7167 TPI1 triosephosphate isomerase 1
2821 GPI glucose phosphate isomerase
5372 PMM1 phosphomannomutase 1
11285 B4GALT7 xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
2997 GYS1 glycogen synthase 1 (muscle)
55501 CHST12 carbohydrate (chondroitin 4) sulfotransferase 12


MSCs batch 1 repressed and GO:0051726: 22 genes, expected 8.5981, P=5.94159e-05, P adjusted = 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
440 ASNS asparagine synthetase
7272 TTK TTK protein kinase
5411 PNN pinin, desmosome associated protein
54443 ANLN anillin, actin binding protein
10460 TACC3 transforming, acidic coiled-coil containing protein 3
1906 EDN1 endothelin 1
10459 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast)
2132 EXT2 exostoses (multiple) 2
8558 CDK10 cyclin-dependent kinase 10
112464 PRKCDBP protein kinase C, delta binding protein
1033 CDKN3 cyclin-dependent kinase inhibitor 3
29108 PYCARD PYD and CARD domain containing
332 BIRC5 baculoviral IAP repeat-containing 5
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
595 CCND1 cyclin D1
890 CCNA2 cyclin A2


MSCs batch 1 repressed and GO:0044271: 11 genes, expected 2.65809, P=7.03091e-05, P adjusted = 1
440 ASNS asparagine synthetase
587 BCAT2 branched chain aminotransferase 2, mitochondrial
5025 P2RX4 purinergic receptor P2X, ligand-gated ion channel, 4
1906 EDN1 endothelin 1
29968 PSAT1 phosphoserine aminotransferase 1
875 CBS cystathionine-beta-synthase
26227 PHGDH phosphoglycerate dehydrogenase
65263 PYCRL pyrroline-5-carboxylate reductase-like
435 ASL argininosuccinate lyase
5351 PLOD1 procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1
5831 PYCR1 pyrroline-5-carboxylate reductase 1


MSCs batch 1 repressed and GO:0005604: 8 genes, expected 1.41041, P=7.32348e-05, P adjusted = 1
1284 COL4A2 collagen, type IV, alpha 2
2200 FBN1 fibrillin 1
176 ACAN aggrecan
3339 HSPG2 heparan sulfate proteoglycan 2
30008 EFEMP2 EGF-containing fibulin-like extracellular matrix protein 2
7078 TIMP3 TIMP metallopeptidase inhibitor 3
283 ANG angiogenin, ribonuclease, RNase A family, 5
3908 LAMA2 laminin, alpha 2


MSCs batch 1 repressed and GO:0055114: 32 genes, expected 15.4061, P=8.66029e-05, P adjusted = 1
147015 DHRS13 dehydrogenase/reductase (SDR family) member 13
10873 ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial
84795 C10orf33 chromosome 10 open reading frame 33
79001 VKORC1 vitamin K epoxide reductase complex, subunit 1
4015 LOX lysyl oxidase
4016 LOXL1 lysyl oxidase-like 1
7001 PRDX2 peroxiredoxin 2
6241 RRM2 ribonucleotide reductase M2 polypeptide
4017 LOXL2 lysyl oxidase-like 2
645 BLVRB biliverdin reductase B (flavin reductase (NADPH))
4713 NDUFB7 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa
4714 NDUFB8 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa
10536 LEPREL2 leprecan-like 2
2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase
26227 PHGDH phosphoglycerate dehydrogenase
84171 LOXL4 lysyl oxidase-like 4
1535 CYBA cytochrome b-245, alpha polypeptide
5959 RDH5 retinol dehydrogenase 5 (11-cis/9-cis)
55214 LEPREL1 leprecan-like 1
65263 PYCRL pyrroline-5-carboxylate reductase-like
3418 IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial
3421 IDH3G isocitrate dehydrogenase 3 (NAD+) gamma
8574 AKR7A2 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)
3995 FADS3 fatty acid desaturase 3
374291 NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)
23030 JMJD2B jumonji domain containing 2B
57407 NMRAL1 NmrA-like family domain containing 1
7384 UQCRC1 ubiquinol-cytochrome c reductase core protein I
5351 PLOD1 procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1
9524 GPSN2 glycoprotein, synaptic 2
5831 PYCR1 pyrroline-5-carboxylate reductase 1
51734 SEPX1 selenoprotein X, 1


MSCs batch 1 repressed and GO:0007051: 6 genes, expected 0.759454, P=8.77526e-05, P adjusted = 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
7272 TTK TTK protein kinase
10615 SPAG5 sperm associated antigen 5
9055 PRC1 protein regulator of cytokinesis 1
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C


MSCs batch 1 repressed and GO:0009309: 9 genes, expected 1.84439, P=8.82936e-05, P adjusted = 1
440 ASNS asparagine synthetase
587 BCAT2 branched chain aminotransferase 2, mitochondrial
29968 PSAT1 phosphoserine aminotransferase 1
875 CBS cystathionine-beta-synthase
26227 PHGDH phosphoglycerate dehydrogenase
65263 PYCRL pyrroline-5-carboxylate reductase-like
435 ASL argininosuccinate lyase
5351 PLOD1 procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1
5831 PYCR1 pyrroline-5-carboxylate reductase 1


MSCs batch 1 induced and GO:0005125: 16 genes, expected 4.7258, P=2.34948e-05, P adjusted = 1
650 BMP2 bone morphogenetic protein 2
374 AREG amphiregulin
2920 CXCL2 chemokine (C-X-C motif) ligand 2
6696 SPP1 secreted phosphoprotein 1
2919 CXCL1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
7292 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
3576 IL8 interleukin 8
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
11009 IL24 interleukin 24
10135 NAMPT nicotinamide phosphoribosyltransferase
2921 CXCL3 chemokine (C-X-C motif) ligand 3
85480 TSLP thymic stromal lymphopoietin
7857 SCG2 secretogranin II (chromogranin C)
4254 KITLG KIT ligand
6374 CXCL5 chemokine (C-X-C motif) ligand 5
5617 PRL prolactin


MSCs batch 1 induced and GO:0045595: 14 genes, expected 4.22491, P=9.48351e-05, P adjusted = 1
650 BMP2 bone morphogenetic protein 2
9935 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)
360 AQP3 aquaporin 3 (Gill blood group)
2261 FGFR3 fibroblast growth factor receptor 3
4853 NOTCH2 Notch homolog 2 (Drosophila)
2138 EYA1 eyes absent homolog 1 (Drosophila)
84525 HOPX HOP homeobox
3280 HES1 hairy and enhancer of split 1, (Drosophila)
658 BMPR1B bone morphogenetic protein receptor, type IB
3981 LIG4 ligase IV, DNA, ATP-dependent
3398 ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
604 BCL6 B-cell CLL/lymphoma 6
7098 TLR3 toll-like receptor 3
659 BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase)


MSCs batch 2 repressed and GO:0007067: 52 genes, expected 2.56137, P=1.51795e-53, P adjusted = 1.76708e-48
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
9212 AURKB aurora kinase B
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
23397 NCAPH non-SMC condensin I complex, subunit H
9133 CCNB2 cyclin B2
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
157313 CDCA2 cell division cycle associated 2
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
54443 ANLN anillin, actin binding protein
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
890 CCNA2 cyclin A2
55872 PBK PDZ binding kinase
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
55165 CEP55 centrosomal protein 55kDa
56992 KIF15 kinesin family member 15
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
10051 SMC4 structural maintenance of chromosomes 4
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
993 CDC25A cell division cycle 25 homolog A (S. pombe)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0000087: 52 genes, expected 2.58612, P=2.64222e-53, P adjusted = 3.07586e-48
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
9212 AURKB aurora kinase B
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
23397 NCAPH non-SMC condensin I complex, subunit H
9133 CCNB2 cyclin B2
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
157313 CDCA2 cell division cycle associated 2
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
54443 ANLN anillin, actin binding protein
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
890 CCNA2 cyclin A2
55872 PBK PDZ binding kinase
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
55165 CEP55 centrosomal protein 55kDa
56992 KIF15 kinesin family member 15
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
10051 SMC4 structural maintenance of chromosomes 4
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
993 CDC25A cell division cycle 25 homolog A (S. pombe)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0000279: 57 genes, expected 3.5884, P=3.32926e-52, P adjusted = 3.87566e-47
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
9212 AURKB aurora kinase B
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
84057 MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae)
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
23397 NCAPH non-SMC condensin I complex, subunit H
9133 CCNB2 cyclin B2
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
7272 TTK TTK protein kinase
157313 CDCA2 cell division cycle associated 2
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
54443 ANLN anillin, actin binding protein
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
890 CCNA2 cyclin A2
55872 PBK PDZ binding kinase
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
55165 CEP55 centrosomal protein 55kDa
56992 KIF15 kinesin family member 15
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
10051 SMC4 structural maintenance of chromosomes 4
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
993 CDC25A cell division cycle 25 homolog A (S. pombe)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
9156 EXO1 exonuclease 1
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0022403: 59 genes, expected 4.46694, P=3.91581e-49, P adjusted = 4.55848e-44
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
9212 AURKB aurora kinase B
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
84057 MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae)
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
23397 NCAPH non-SMC condensin I complex, subunit H
9133 CCNB2 cyclin B2
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
7272 TTK TTK protein kinase
157313 CDCA2 cell division cycle associated 2
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
54443 ANLN anillin, actin binding protein
6790 AURKA aurora kinase A
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
890 CCNA2 cyclin A2
55872 PBK PDZ binding kinase
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
55165 CEP55 centrosomal protein 55kDa
56992 KIF15 kinesin family member 15
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
10051 SMC4 structural maintenance of chromosomes 4
1033 CDKN3 cyclin-dependent kinase inhibitor 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
993 CDC25A cell division cycle 25 homolog A (S. pombe)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
9156 EXO1 exonuclease 1
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0000278: 57 genes, expected 4.54118, P=3.98118e-46, P adjusted = 4.63457e-41
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
9212 AURKB aurora kinase B
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
23397 NCAPH non-SMC condensin I complex, subunit H
9133 CCNB2 cyclin B2
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
7272 TTK TTK protein kinase
157313 CDCA2 cell division cycle associated 2
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
54443 ANLN anillin, actin binding protein
6790 AURKA aurora kinase A
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
890 CCNA2 cyclin A2
55872 PBK PDZ binding kinase
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
55165 CEP55 centrosomal protein 55kDa
56992 KIF15 kinesin family member 15
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
10051 SMC4 structural maintenance of chromosomes 4
1033 CDKN3 cyclin-dependent kinase inhibitor 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
993 CDC25A cell division cycle 25 homolog A (S. pombe)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0051301: 49 genes, expected 2.90784, P=4.26042e-46, P adjusted = 4.95964e-41
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
9212 AURKB aurora kinase B
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
29127 RACGAP1 Rac GTPase activating protein 1
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
23397 NCAPH non-SMC condensin I complex, subunit H
9133 CCNB2 cyclin B2
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
157313 CDCA2 cell division cycle associated 2
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
54443 ANLN anillin, actin binding protein
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
890 CCNA2 cyclin A2
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
55165 CEP55 centrosomal protein 55kDa
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
10051 SMC4 structural maintenance of chromosomes 4
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
993 CDC25A cell division cycle 25 homolog A (S. pombe)
151246 SGOL2 shugoshin-like 2 (S. pombe)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
9134 CCNE2 cyclin E2
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0022402: 62 genes, expected 6.02603, P=6.7434e-45, P adjusted = 7.85013e-40
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
9212 AURKB aurora kinase B
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
84057 MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae)
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
29127 RACGAP1 Rac GTPase activating protein 1
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
23397 NCAPH non-SMC condensin I complex, subunit H
9133 CCNB2 cyclin B2
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
7272 TTK TTK protein kinase
157313 CDCA2 cell division cycle associated 2
11130 ZWINT ZW10 interactor
283431 GAS2L3 growth arrest-specific 2 like 3
64151 NCAPG non-SMC condensin I complex, subunit G
54443 ANLN anillin, actin binding protein
6790 AURKA aurora kinase A
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
890 CCNA2 cyclin A2
55872 PBK PDZ binding kinase
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
55165 CEP55 centrosomal protein 55kDa
56992 KIF15 kinesin family member 15
220042 C11orf82 chromosome 11 open reading frame 82
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
10051 SMC4 structural maintenance of chromosomes 4
1033 CDKN3 cyclin-dependent kinase inhibitor 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
993 CDC25A cell division cycle 25 homolog A (S. pombe)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
9156 EXO1 exonuclease 1
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0007049: 74 genes, expected 10.1341, P=2.5188e-43, P adjusted = 2.93219e-38
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
983 CDC2 cell division cycle 2, G1 to S and G2 to M
9212 AURKB aurora kinase B
2177 FANCD2 Fanconi anemia, complementation group D2
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
84057 MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae)
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
55215 FANCI Fanconi anemia, complementation group I
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
29127 RACGAP1 Rac GTPase activating protein 1
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
4288 MKI67 antigen identified by monoclonal antibody Ki-67
1063 CENPF centromere protein F, 350/400ka (mitosin)
4176 MCM7 minichromosome maintenance complex component 7
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
4171 MCM2 minichromosome maintenance complex component 2
220134 C18orf24 chromosome 18 open reading frame 24
23397 NCAPH non-SMC condensin I complex, subunit H
9133 CCNB2 cyclin B2
9232 PTTG1 pituitary tumor-transforming 1
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
54892 NCAPG2 non-SMC condensin II complex, subunit G2
7272 TTK TTK protein kinase
157313 CDCA2 cell division cycle associated 2
11130 ZWINT ZW10 interactor
283431 GAS2L3 growth arrest-specific 2 like 3
64151 NCAPG non-SMC condensin I complex, subunit G
54443 ANLN anillin, actin binding protein
6790 AURKA aurora kinase A
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
83461 CDCA3 cell division cycle associated 3
10460 TACC3 transforming, acidic coiled-coil containing protein 3
890 CCNA2 cyclin A2
55872 PBK PDZ binding kinase
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
55165 CEP55 centrosomal protein 55kDa
56992 KIF15 kinesin family member 15
220042 C11orf82 chromosome 11 open reading frame 82
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
10051 SMC4 structural maintenance of chromosomes 4
1033 CDKN3 cyclin-dependent kinase inhibitor 3
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
5933 RBL1 retinoblastoma-like 1 (p107)
29128 UHRF1 ubiquitin-like with PHD and ring finger domains 1
993 CDC25A cell division cycle 25 homolog A (S. pombe)
79733 E2F8 E2F transcription factor 8
151246 SGOL2 shugoshin-like 2 (S. pombe)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
9134 CCNE2 cyclin E2
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
9156 EXO1 exonuclease 1
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0005694: 43 genes, expected 4.44219, P=7.71321e-30, P adjusted = 8.9791e-25
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9212 AURKB aurora kinase B
2177 FANCD2 Fanconi anemia, complementation group D2
2491 CENPI centromere protein I
3070 HELLS helicase, lymphoid-specific
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
56852 RAD18 RAD18 homolog (S. cerevisiae)
55215 FANCI Fanconi anemia, complementation group I
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
79682 MLF1IP MLF1 interacting protein
1062 CENPE centromere protein E, 312kDa
5983 RFC3 replication factor C (activator 1) 3, 38kDa
79019 CENPM centromere protein M
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
1063 CENPF centromere protein F, 350/400ka (mitosin)
55839 CENPN centromere protein N
4176 MCM7 minichromosome maintenance complex component 7
7112 TMPO thymopoietin
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
4171 MCM2 minichromosome maintenance complex component 2
220134 C18orf24 chromosome 18 open reading frame 24
11130 ZWINT ZW10 interactor
2956 MSH6 mutS homolog 6 (E. coli)
10615 SPAG5 sperm associated antigen 5
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
10051 SMC4 structural maintenance of chromosomes 4
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
64946 CENPH centromere protein H
151246 SGOL2 shugoshin-like 2 (S. pombe)
11339 OIP5 Opa interacting protein 5
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0044427: 40 genes, expected 3.69976, P=1.143e-29, P adjusted = 1.33059e-24
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
9212 AURKB aurora kinase B
2491 CENPI centromere protein I
3070 HELLS helicase, lymphoid-specific
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
56852 RAD18 RAD18 homolog (S. cerevisiae)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
79682 MLF1IP MLF1 interacting protein
1062 CENPE centromere protein E, 312kDa
5983 RFC3 replication factor C (activator 1) 3, 38kDa
79019 CENPM centromere protein M
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
1063 CENPF centromere protein F, 350/400ka (mitosin)
55839 CENPN centromere protein N
4176 MCM7 minichromosome maintenance complex component 7
7112 TMPO thymopoietin
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
4171 MCM2 minichromosome maintenance complex component 2
220134 C18orf24 chromosome 18 open reading frame 24
11130 ZWINT ZW10 interactor
2956 MSH6 mutS homolog 6 (E. coli)
10615 SPAG5 sperm associated antigen 5
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
10051 SMC4 structural maintenance of chromosomes 4
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
64946 CENPH centromere protein H
151246 SGOL2 shugoshin-like 2 (S. pombe)
11339 OIP5 Opa interacting protein 5
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
8914 TIMELESS timeless homolog (Drosophila)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0000775: 25 genes, expected 1.05177, P=6.88323e-28, P adjusted = 8.01291e-23
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
9212 AURKB aurora kinase B
2491 CENPI centromere protein I
3070 HELLS helicase, lymphoid-specific
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
79682 MLF1IP MLF1 interacting protein
1062 CENPE centromere protein E, 312kDa
79019 CENPM centromere protein M
1063 CENPF centromere protein F, 350/400ka (mitosin)
55839 CENPN centromere protein N
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
11130 ZWINT ZW10 interactor
10615 SPAG5 sperm associated antigen 5
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
64946 CENPH centromere protein H
151246 SGOL2 shugoshin-like 2 (S. pombe)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like


MSCs batch 2 repressed and GO:0005819: 25 genes, expected 1.07652, P=1.33262e-27, P adjusted = 1.55134e-22
9735 KNTC1 kinetochore associated 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29127 RACGAP1 Rac GTPase activating protein 1
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
1063 CENPF centromere protein F, 350/400ka (mitosin)
220134 C18orf24 chromosome 18 open reading frame 24
7272 TTK TTK protein kinase
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)


MSCs batch 2 repressed and GO:0000777: 17 genes, expected 0.494951, P=1.48737e-22, P adjusted = 1.73148e-17
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
79682 MLF1IP MLF1 interacting protein
1062 CENPE centromere protein E, 312kDa
79019 CENPM centromere protein M
1063 CENPF centromere protein F, 350/400ka (mitosin)
55839 CENPN centromere protein N
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
11130 ZWINT ZW10 interactor
10615 SPAG5 sperm associated antigen 5
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
64946 CENPH centromere protein H
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like


MSCs batch 2 repressed and GO:0015630: 40 genes, expected 5.70432, P=1.9056e-22, P adjusted = 2.21835e-17
9735 KNTC1 kinetochore associated 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29127 RACGAP1 Rac GTPase activating protein 1
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
146909 KIF18B kinesin family member 18B
220134 C18orf24 chromosome 18 open reading frame 24
9133 CCNB2 cyclin B2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
7272 TTK TTK protein kinase
6790 AURKA aurora kinase A
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
10460 TACC3 transforming, acidic coiled-coil containing protein 3
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
6780 STAU1 staufen, RNA binding protein, homolog 1 (Drosophila)
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0000779: 17 genes, expected 0.507325, P=2.51322e-22, P adjusted = 2.92569e-17
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
79682 MLF1IP MLF1 interacting protein
1062 CENPE centromere protein E, 312kDa
79019 CENPM centromere protein M
1063 CENPF centromere protein F, 350/400ka (mitosin)
55839 CENPN centromere protein N
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
11130 ZWINT ZW10 interactor
10615 SPAG5 sperm associated antigen 5
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
64946 CENPH centromere protein H
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like


MSCs batch 2 repressed and GO:0006259: 40 genes, expected 5.92704, P=7.82332e-22, P adjusted = 9.10729e-17
10635 RAD51AP1 RAD51 associated protein 1
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
2177 FANCD2 Fanconi anemia, complementation group D2
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
84057 MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae)
11168 PSIP1 PC4 and SFRS1 interacting protein 1
51514 DTL denticleless homolog (Drosophila)
56852 RAD18 RAD18 homolog (S. cerevisiae)
55215 FANCI Fanconi anemia, complementation group I
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
55388 MCM10 minichromosome maintenance complex component 10
6241 RRM2 ribonucleotide reductase M2 polypeptide
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
9232 PTTG1 pituitary tumor-transforming 1
7083 TK1 thymidine kinase 1, soluble
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
10535 RNASEH2A ribonuclease H2, subunit A
2956 MSH6 mutS homolog 6 (E. coli)
7298 TYMS thymidylate synthetase
23049 SMG1 PI-3-kinase-related kinase SMG-1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
51659 GINS2 GINS complex subunit 2 (Psf2 homolog)
4174 MCM5 minichromosome maintenance complex component 5
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
29128 UHRF1 ubiquitin-like with PHD and ring finger domains 1
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
4173 MCM4 minichromosome maintenance complex component 4
993 CDC25A cell division cycle 25 homolog A (S. pombe)
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
9134 CCNE2 cyclin E2
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
55247 NEIL3 nei endonuclease VIII-like 3 (E. coli)
9156 EXO1 exonuclease 1
3148 HMGB2 high-mobility group box 2
6240 RRM1 ribonucleotide reductase M1
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0000776: 18 genes, expected 0.655811, P=1.09651e-21, P adjusted = 1.27647e-16
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
79682 MLF1IP MLF1 interacting protein
1062 CENPE centromere protein E, 312kDa
79019 CENPM centromere protein M
1063 CENPF centromere protein F, 350/400ka (mitosin)
55839 CENPN centromere protein N
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
11130 ZWINT ZW10 interactor
10615 SPAG5 sperm associated antigen 5
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
64946 CENPH centromere protein H
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like


MSCs batch 2 repressed and GO:0006260: 28 genes, expected 2.68511, P=1.52257e-20, P adjusted = 1.77245e-15
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
995 CDC25C cell division cycle 25 homolog C (S. pombe)
51514 DTL denticleless homolog (Drosophila)
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
55388 MCM10 minichromosome maintenance complex component 10
6241 RRM2 ribonucleotide reductase M2 polypeptide
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
7083 TK1 thymidine kinase 1, soluble
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
10535 RNASEH2A ribonuclease H2, subunit A
2956 MSH6 mutS homolog 6 (E. coli)
7298 TYMS thymidylate synthetase
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
51659 GINS2 GINS complex subunit 2 (Psf2 homolog)
4174 MCM5 minichromosome maintenance complex component 5
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
4173 MCM4 minichromosome maintenance complex component 4
993 CDC25A cell division cycle 25 homolog A (S. pombe)
9134 CCNE2 cyclin E2
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
9156 EXO1 exonuclease 1
3148 HMGB2 high-mobility group box 2
6240 RRM1 ribonucleotide reductase M1
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0000793: 19 genes, expected 1.10127, P=1.50734e-18, P adjusted = 1.75472e-13
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
79682 MLF1IP MLF1 interacting protein
1062 CENPE centromere protein E, 312kDa
79019 CENPM centromere protein M
1063 CENPF centromere protein F, 350/400ka (mitosin)
55839 CENPN centromere protein N
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
220134 C18orf24 chromosome 18 open reading frame 24
11130 ZWINT ZW10 interactor
10615 SPAG5 sperm associated antigen 5
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
10051 SMC4 structural maintenance of chromosomes 4
64946 CENPH centromere protein H
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0007346: 20 genes, expected 1.29925, P=2.04183e-18, P adjusted = 2.37694e-13
9735 KNTC1 kinetochore associated 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
995 CDC25C cell division cycle 25 homolog C (S. pombe)
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
7272 TTK TTK protein kinase
11130 ZWINT ZW10 interactor
54443 ANLN anillin, actin binding protein
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
890 CCNA2 cyclin A2
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0044430: 43 genes, expected 8.89675, P=6.73747e-18, P adjusted = 7.84322e-13
9735 KNTC1 kinetochore associated 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29127 RACGAP1 Rac GTPase activating protein 1
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
146909 KIF18B kinesin family member 18B
822 CAPG capping protein (actin filament), gelsolin-like
220134 C18orf24 chromosome 18 open reading frame 24
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
7272 TTK TTK protein kinase
54443 ANLN anillin, actin binding protein
6790 AURKA aurora kinase A
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
10460 TACC3 transforming, acidic coiled-coil containing protein 3
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
4741 NEFM neurofilament, medium polypeptide
6780 STAU1 staufen, RNA binding protein, homolog 1 (Drosophila)
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
4001 LMNB1 lamin B1
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0007059: 16 genes, expected 0.791922, P=5.36904e-17, P adjusted = 6.25021e-12
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
113130 CDCA5 cell division cycle associated 5
1062 CENPE centromere protein E, 312kDa
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
23397 NCAPH non-SMC condensin I complex, subunit H
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
10051 SMC4 structural maintenance of chromosomes 4
151246 SGOL2 shugoshin-like 2 (S. pombe)


MSCs batch 2 repressed and GO:0007051: 12 genes, expected 0.346466, P=2.5245e-16, P adjusted = 2.93882e-11
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
3925 STMN1 stathmin 1/oncoprotein 18
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
7272 TTK TTK protein kinase
11130 ZWINT ZW10 interactor
6790 AURKA aurora kinase A
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
11065 UBE2C ubiquitin-conjugating enzyme E2C
9055 PRC1 protein regulator of cytokinesis 1


MSCs batch 2 repressed and GO:0007017: 24 genes, expected 2.85834, P=1.42104e-15, P adjusted = 1.65426e-10
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
146909 KIF18B kinesin family member 18B
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
7272 TTK TTK protein kinase
11130 ZWINT ZW10 interactor
6790 AURKA aurora kinase A
51512 GTSE1 G-2 and S-phase expressed 1
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
4741 NEFM neurofilament, medium polypeptide
11065 UBE2C ubiquitin-conjugating enzyme E2C
9055 PRC1 protein regulator of cytokinesis 1
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0051726: 27 genes, expected 3.92249, P=3.26139e-15, P adjusted = 3.79664e-10
9735 KNTC1 kinetochore associated 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
995 CDC25C cell division cycle 25 homolog C (S. pombe)
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
7272 TTK TTK protein kinase
11130 ZWINT ZW10 interactor
54443 ANLN anillin, actin binding protein
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
10460 TACC3 transforming, acidic coiled-coil containing protein 3
890 CCNA2 cyclin A2
1033 CDKN3 cyclin-dependent kinase inhibitor 3
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
5933 RBL1 retinoblastoma-like 1 (p107)
993 CDC25A cell division cycle 25 homolog A (S. pombe)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
9134 CCNE2 cyclin E2
8914 TIMELESS timeless homolog (Drosophila)
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0005856: 50 genes, expected 14.3412, P=6.22832e-15, P adjusted = 7.25051e-10
9735 KNTC1 kinetochore associated 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
891 CCNB1 cyclin B1
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
11013 TMSL8 thymosin-like 8
29127 RACGAP1 Rac GTPase activating protein 1
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
23136 EPB41L3 erythrocyte membrane protein band 4.1-like 3
146909 KIF18B kinesin family member 18B
7223 TRPC4 transient receptor potential cation channel, subfamily C, member 4
822 CAPG capping protein (actin filament), gelsolin-like
220134 C18orf24 chromosome 18 open reading frame 24
23397 NCAPH non-SMC condensin I complex, subunit H
9133 CCNB2 cyclin B2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
7272 TTK TTK protein kinase
339855 KY kyphoscoliosis peptidase
54443 ANLN anillin, actin binding protein
6790 AURKA aurora kinase A
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
10460 TACC3 transforming, acidic coiled-coil containing protein 3
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
4741 NEFM neurofilament, medium polypeptide
10391 CORO2B coronin, actin binding protein, 2B
6780 STAU1 staufen, RNA binding protein, homolog 1 (Drosophila)
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
9055 PRC1 protein regulator of cytokinesis 1
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
4001 LMNB1 lamin B1
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0000070: 11 genes, expected 0.383587, P=5.68615e-14, P adjusted = 6.61936e-09
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
113130 CDCA5 cell division cycle associated 5
1062 CENPE centromere protein E, 312kDa
51203 NUSAP1 nucleolar and spindle associated protein 1
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
23397 NCAPH non-SMC condensin I complex, subunit H
54892 NCAPG2 non-SMC condensin II complex, subunit G2
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
10051 SMC4 structural maintenance of chromosomes 4


MSCs batch 2 repressed and GO:0043234: 60 genes, expected 21.0602, P=6.39835e-14, P adjusted = 7.44845e-09
9735 KNTC1 kinetochore associated 1
57405 SPC25 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
10762 NUP50 nucleoporin 50kDa
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
113130 CDCA5 cell division cycle associated 5
79682 MLF1IP MLF1 interacting protein
1062 CENPE centromere protein E, 312kDa
2295 FOXF2 forkhead box F2
9928 KIF14 kinesin family member 14
5983 RFC3 replication factor C (activator 1) 3, 38kDa
3676 ITGA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)
79019 CENPM centromere protein M
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
1063 CENPF centromere protein F, 350/400ka (mitosin)
55839 CENPN centromere protein N
4176 MCM7 minichromosome maintenance complex component 7
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
146909 KIF18B kinesin family member 18B
7223 TRPC4 transient receptor potential cation channel, subfamily C, member 4
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
154 ADRB2 adrenergic, beta-2-, receptor, surface
822 CAPG capping protein (actin filament), gelsolin-like
6328 SCN3A sodium channel, voltage-gated, type III, alpha subunit
1439 CSF2RB colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
4171 MCM2 minichromosome maintenance complex component 2
220134 C18orf24 chromosome 18 open reading frame 24
2146 EZH2 enhancer of zeste homolog 2 (Drosophila)
10875 FGL2 fibrinogen-like 2
11130 ZWINT ZW10 interactor
2956 MSH6 mutS homolog 6 (E. coli)
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
8515 ITGA10 integrin, alpha 10
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
83540 NUF2 NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
10051 SMC4 structural maintenance of chromosomes 4
6780 STAU1 staufen, RNA binding protein, homolog 1 (Drosophila)
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
5933 RBL1 retinoblastoma-like 1 (p107)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
79733 E2F8 E2F transcription factor 8
64946 CENPH centromere protein H
151246 SGOL2 shugoshin-like 2 (S. pombe)
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
55143 CDCA8 cell division cycle associated 8
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B
6240 RRM1 ribonucleotide reductase M1


MSCs batch 2 repressed and GO:0000819: 11 genes, expected 0.395961, P=8.57067e-14, P adjusted = 9.97728e-09
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
113130 CDCA5 cell division cycle associated 5
1062 CENPE centromere protein E, 312kDa
51203 NUSAP1 nucleolar and spindle associated protein 1
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
23397 NCAPH non-SMC condensin I complex, subunit H
54892 NCAPG2 non-SMC condensin II complex, subunit G2
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
10051 SMC4 structural maintenance of chromosomes 4


MSCs batch 2 repressed and GO:0000075: 13 genes, expected 0.767175, P=5.65917e-13, P adjusted = 6.58795e-08
9735 KNTC1 kinetochore associated 1
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
1063 CENPF centromere protein F, 350/400ka (mitosin)
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
7272 TTK TTK protein kinase
11130 ZWINT ZW10 interactor
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
890 CCNA2 cyclin A2
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
9134 CCNE2 cyclin E2


MSCs batch 2 repressed and GO:0031981: 46 genes, expected 13.9205, P=6.16398e-13, P adjusted = 7.17562e-08
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
891 CCNB1 cyclin B1
51422 PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit
995 CDC25C cell division cycle 25 homolog C (S. pombe)
332 BIRC5 baculoviral IAP repeat-containing 5
10762 NUP50 nucleoporin 50kDa
2295 FOXF2 forkhead box F2
5983 RFC3 replication factor C (activator 1) 3, 38kDa
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
1063 CENPF centromere protein F, 350/400ka (mitosin)
4176 MCM7 minichromosome maintenance complex component 7
55388 MCM10 minichromosome maintenance complex component 10
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
2146 EZH2 enhancer of zeste homolog 2 (Drosophila)
145508 C14orf145 chromosome 14 open reading frame 145
55320 C14orf106 chromosome 14 open reading frame 106
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
890 CCNA2 cyclin A2
55975 KLHL7 kelch-like 7 (Drosophila)
9493 KIF23 kinesin family member 23
24137 KIF4A kinesin family member 4A
4174 MCM5 minichromosome maintenance complex component 5
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
5933 RBL1 retinoblastoma-like 1 (p107)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
4173 MCM4 minichromosome maintenance complex component 4
993 CDC25A cell division cycle 25 homolog A (S. pombe)
79733 E2F8 E2F transcription factor 8
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
11339 OIP5 Opa interacting protein 5
9134 CCNE2 cyclin E2
8487 SIP1 survival of motor neuron protein interacting protein 1
4001 LMNB1 lamin B1
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
9585 KIF20B kinesin family member 20B
3148 HMGB2 high-mobility group box 2
7133 TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0005654: 35 genes, expected 8.51317, P=1.23679e-12, P adjusted = 1.43978e-07
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
891 CCNB1 cyclin B1
51422 PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit
995 CDC25C cell division cycle 25 homolog C (S. pombe)
10762 NUP50 nucleoporin 50kDa
2295 FOXF2 forkhead box F2
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
55388 MCM10 minichromosome maintenance complex component 10
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
2146 EZH2 enhancer of zeste homolog 2 (Drosophila)
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
890 CCNA2 cyclin A2
9493 KIF23 kinesin family member 23
4174 MCM5 minichromosome maintenance complex component 5
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
5933 RBL1 retinoblastoma-like 1 (p107)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
4173 MCM4 minichromosome maintenance complex component 4
993 CDC25A cell division cycle 25 homolog A (S. pombe)
79733 E2F8 E2F transcription factor 8
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
11339 OIP5 Opa interacting protein 5
9134 CCNE2 cyclin E2
8487 SIP1 survival of motor neuron protein interacting protein 1
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
9585 KIF20B kinesin family member 20B
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0000226: 15 genes, expected 1.29925, P=3.3144e-12, P adjusted = 3.85836e-07
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
7272 TTK TTK protein kinase
11130 ZWINT ZW10 interactor
6790 AURKA aurora kinase A
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
4741 NEFM neurofilament, medium polypeptide
11065 UBE2C ubiquitin-conjugating enzyme E2C
9055 PRC1 protein regulator of cytokinesis 1


MSCs batch 2 repressed and GO:0044428: 52 genes, expected 18.2018, P=4.03015e-12, P adjusted = 4.69158e-07
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
891 CCNB1 cyclin B1
51422 PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit
995 CDC25C cell division cycle 25 homolog C (S. pombe)
51514 DTL denticleless homolog (Drosophila)
332 BIRC5 baculoviral IAP repeat-containing 5
10762 NUP50 nucleoporin 50kDa
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
2295 FOXF2 forkhead box F2
5983 RFC3 replication factor C (activator 1) 3, 38kDa
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
1063 CENPF centromere protein F, 350/400ka (mitosin)
4176 MCM7 minichromosome maintenance complex component 7
55388 MCM10 minichromosome maintenance complex component 10
7112 TMPO thymopoietin
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
89795 NAV3 neuron navigator 3
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
2146 EZH2 enhancer of zeste homolog 2 (Drosophila)
145508 C14orf145 chromosome 14 open reading frame 145
2956 MSH6 mutS homolog 6 (E. coli)
55320 C14orf106 chromosome 14 open reading frame 106
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
890 CCNA2 cyclin A2
55975 KLHL7 kelch-like 7 (Drosophila)
9493 KIF23 kinesin family member 23
24137 KIF4A kinesin family member 4A
4174 MCM5 minichromosome maintenance complex component 5
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
5933 RBL1 retinoblastoma-like 1 (p107)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
4173 MCM4 minichromosome maintenance complex component 4
993 CDC25A cell division cycle 25 homolog A (S. pombe)
79733 E2F8 E2F transcription factor 8
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
11339 OIP5 Opa interacting protein 5
9134 CCNE2 cyclin E2
8487 SIP1 survival of motor neuron protein interacting protein 1
4001 LMNB1 lamin B1
8914 TIMELESS timeless homolog (Drosophila)
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
9585 KIF20B kinesin family member 20B
3148 HMGB2 high-mobility group box 2
7133 TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0006261: 13 genes, expected 0.903286, P=5.20938e-12, P adjusted = 6.06434e-07
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
4171 MCM2 minichromosome maintenance complex component 2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
2956 MSH6 mutS homolog 6 (E. coli)
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
4174 MCM5 minichromosome maintenance complex component 5
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
4173 MCM4 minichromosome maintenance complex component 4
9134 CCNE2 cyclin E2
9156 EXO1 exonuclease 1
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0010564: 12 genes, expected 0.754801, P=1.0078e-11, P adjusted = 1.1732e-06
9735 KNTC1 kinetochore associated 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
995 CDC25C cell division cycle 25 homolog C (S. pombe)
332 BIRC5 baculoviral IAP repeat-containing 5
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
51203 NUSAP1 nucleolar and spindle associated protein 1
54443 ANLN anillin, actin binding protein
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
8914 TIMELESS timeless homolog (Drosophila)
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0006974: 23 genes, expected 3.93486, P=1.18848e-11, P adjusted = 1.38353e-06
10635 RAD51AP1 RAD51 associated protein 1
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
2177 FANCD2 Fanconi anemia, complementation group D2
51514 DTL denticleless homolog (Drosophila)
56852 RAD18 RAD18 homolog (S. cerevisiae)
55215 FANCI Fanconi anemia, complementation group I
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
9232 PTTG1 pituitary tumor-transforming 1
2956 MSH6 mutS homolog 6 (E. coli)
7298 TYMS thymidylate synthetase
23049 SMG1 PI-3-kinase-related kinase SMG-1
51512 GTSE1 G-2 and S-phase expressed 1
890 CCNA2 cyclin A2
29128 UHRF1 ubiquitin-like with PHD and ring finger domains 1
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
8914 TIMELESS timeless homolog (Drosophila)
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
55247 NEIL3 nei endonuclease VIII-like 3 (E. coli)
9156 EXO1 exonuclease 1
3148 HMGB2 high-mobility group box 2
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0005874: 20 genes, expected 2.90784, P=1.47229e-11, P adjusted = 1.71393e-06
9735 KNTC1 kinetochore associated 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
332 BIRC5 baculoviral IAP repeat-containing 5
11004 KIF2C kinesin family member 2C
29127 RACGAP1 Rac GTPase activating protein 1
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
3925 STMN1 stathmin 1/oncoprotein 18
51203 NUSAP1 nucleolar and spindle associated protein 1
146909 KIF18B kinesin family member 18B
51512 GTSE1 G-2 and S-phase expressed 1
10615 SPAG5 sperm associated antigen 5
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
9055 PRC1 protein regulator of cytokinesis 1
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0043233: 49 genes, expected 17.6203, P=4.95298e-11, P adjusted = 5.76586e-06
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
891 CCNB1 cyclin B1
51422 PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit
995 CDC25C cell division cycle 25 homolog C (S. pombe)
332 BIRC5 baculoviral IAP repeat-containing 5
10762 NUP50 nucleoporin 50kDa
2295 FOXF2 forkhead box F2
5983 RFC3 replication factor C (activator 1) 3, 38kDa
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
1063 CENPF centromere protein F, 350/400ka (mitosin)
4176 MCM7 minichromosome maintenance complex component 7
55388 MCM10 minichromosome maintenance complex component 10
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
2146 EZH2 enhancer of zeste homolog 2 (Drosophila)
9957 HS3ST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1
145508 C14orf145 chromosome 14 open reading frame 145
55320 C14orf106 chromosome 14 open reading frame 106
5743 PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
890 CCNA2 cyclin A2
55975 KLHL7 kelch-like 7 (Drosophila)
9493 KIF23 kinesin family member 23
24137 KIF4A kinesin family member 4A
4174 MCM5 minichromosome maintenance complex component 5
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
5933 RBL1 retinoblastoma-like 1 (p107)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
4173 MCM4 minichromosome maintenance complex component 4
993 CDC25A cell division cycle 25 homolog A (S. pombe)
79733 E2F8 E2F transcription factor 8
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
11339 OIP5 Opa interacting protein 5
9134 CCNE2 cyclin E2
8487 SIP1 survival of motor neuron protein interacting protein 1
4001 LMNB1 lamin B1
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
9585 KIF20B kinesin family member 20B
3148 HMGB2 high-mobility group box 2
7133 TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0007088: 10 genes, expected 0.507325, P=5.62741e-11, P adjusted = 6.55098e-06
9735 KNTC1 kinetochore associated 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
995 CDC25C cell division cycle 25 homolog C (S. pombe)
332 BIRC5 baculoviral IAP repeat-containing 5
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
51203 NUSAP1 nucleolar and spindle associated protein 1
54443 ANLN anillin, actin binding protein
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0005524: 47 genes, expected 16.519, P=6.16171e-11, P adjusted = 7.17297e-06
9833 MELK maternal embryonic leucine zipper kinase
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9212 AURKB aurora kinase B
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
3070 HELLS helicase, lymphoid-specific
11004 KIF2C kinesin family member 2C
5167 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29028 ATAD2 ATPase family, AAA domain containing 2
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
10733 PLK4 polo-like kinase 4 (Drosophila)
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
4176 MCM7 minichromosome maintenance complex component 7
146909 KIF18B kinesin family member 18B
63979 FIGNL1 fidgetin-like 1
4171 MCM2 minichromosome maintenance complex component 2
7083 TK1 thymidine kinase 1, soluble
7272 TTK TTK protein kinase
2956 MSH6 mutS homolog 6 (E. coli)
6781 STC1 stanniocalcin 1
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
55872 PBK PDZ binding kinase
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
4174 MCM5 minichromosome maintenance complex component 5
10051 SMC4 structural maintenance of chromosomes 4
26577 PCOLCE2 procollagen C-endopeptidase enhancer 2
9319 TRIP13 thyroid hormone receptor interactor 13
4173 MCM4 minichromosome maintenance complex component 4
203447 NRK Nik related kinase
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B
6240 RRM1 ribonucleotide reductase M1
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0070013: 48 genes, expected 17.2243, P=7.55935e-11, P adjusted = 8.79999e-06
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
891 CCNB1 cyclin B1
51422 PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit
995 CDC25C cell division cycle 25 homolog C (S. pombe)
332 BIRC5 baculoviral IAP repeat-containing 5
10762 NUP50 nucleoporin 50kDa
2295 FOXF2 forkhead box F2
5983 RFC3 replication factor C (activator 1) 3, 38kDa
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
1063 CENPF centromere protein F, 350/400ka (mitosin)
4176 MCM7 minichromosome maintenance complex component 7
55388 MCM10 minichromosome maintenance complex component 10
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
2146 EZH2 enhancer of zeste homolog 2 (Drosophila)
9957 HS3ST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1
145508 C14orf145 chromosome 14 open reading frame 145
55320 C14orf106 chromosome 14 open reading frame 106
5743 PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
890 CCNA2 cyclin A2
55975 KLHL7 kelch-like 7 (Drosophila)
9493 KIF23 kinesin family member 23
24137 KIF4A kinesin family member 4A
4174 MCM5 minichromosome maintenance complex component 5
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
5933 RBL1 retinoblastoma-like 1 (p107)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
4173 MCM4 minichromosome maintenance complex component 4
993 CDC25A cell division cycle 25 homolog A (S. pombe)
79733 E2F8 E2F transcription factor 8
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
11339 OIP5 Opa interacting protein 5
9134 CCNE2 cyclin E2
8487 SIP1 survival of motor neuron protein interacting protein 1
4001 LMNB1 lamin B1
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
9585 KIF20B kinesin family member 20B
3148 HMGB2 high-mobility group box 2
7133 TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0032559: 47 genes, expected 16.7417, P=9.68011e-11, P adjusted = 1.12688e-05
9833 MELK maternal embryonic leucine zipper kinase
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9212 AURKB aurora kinase B
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
3070 HELLS helicase, lymphoid-specific
11004 KIF2C kinesin family member 2C
5167 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29028 ATAD2 ATPase family, AAA domain containing 2
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
10733 PLK4 polo-like kinase 4 (Drosophila)
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
4176 MCM7 minichromosome maintenance complex component 7
146909 KIF18B kinesin family member 18B
63979 FIGNL1 fidgetin-like 1
4171 MCM2 minichromosome maintenance complex component 2
7083 TK1 thymidine kinase 1, soluble
7272 TTK TTK protein kinase
2956 MSH6 mutS homolog 6 (E. coli)
6781 STC1 stanniocalcin 1
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
55872 PBK PDZ binding kinase
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
4174 MCM5 minichromosome maintenance complex component 5
10051 SMC4 structural maintenance of chromosomes 4
26577 PCOLCE2 procollagen C-endopeptidase enhancer 2
9319 TRIP13 thyroid hormone receptor interactor 13
4173 MCM4 minichromosome maintenance complex component 4
203447 NRK Nik related kinase
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B
6240 RRM1 ribonucleotide reductase M1
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0031974: 49 genes, expected 18.0286, P=1.09899e-10, P adjusted = 1.27936e-05
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
26271 FBXO5 F-box protein 5
10112 KIF20A kinesin family member 20A
891 CCNB1 cyclin B1
51422 PRKAG2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit
995 CDC25C cell division cycle 25 homolog C (S. pombe)
332 BIRC5 baculoviral IAP repeat-containing 5
10762 NUP50 nucleoporin 50kDa
2295 FOXF2 forkhead box F2
5983 RFC3 replication factor C (activator 1) 3, 38kDa
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
1063 CENPF centromere protein F, 350/400ka (mitosin)
4176 MCM7 minichromosome maintenance complex component 7
55388 MCM10 minichromosome maintenance complex component 10
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
2146 EZH2 enhancer of zeste homolog 2 (Drosophila)
9957 HS3ST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1
145508 C14orf145 chromosome 14 open reading frame 145
55320 C14orf106 chromosome 14 open reading frame 106
5743 PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
890 CCNA2 cyclin A2
55975 KLHL7 kelch-like 7 (Drosophila)
9493 KIF23 kinesin family member 23
24137 KIF4A kinesin family member 4A
4174 MCM5 minichromosome maintenance complex component 5
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
5933 RBL1 retinoblastoma-like 1 (p107)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
4173 MCM4 minichromosome maintenance complex component 4
993 CDC25A cell division cycle 25 homolog A (S. pombe)
79733 E2F8 E2F transcription factor 8
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
11339 OIP5 Opa interacting protein 5
9134 CCNE2 cyclin E2
8487 SIP1 survival of motor neuron protein interacting protein 1
4001 LMNB1 lamin B1
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
9585 KIF20B kinesin family member 20B
3148 HMGB2 high-mobility group box 2
7133 TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0051276: 23 genes, expected 4.54118, P=2.10004e-10, P adjusted = 2.4447e-05
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
3070 HELLS helicase, lymphoid-specific
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
113130 CDCA5 cell division cycle associated 5
1062 CENPE centromere protein E, 312kDa
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
4171 MCM2 minichromosome maintenance complex component 2
23397 NCAPH non-SMC condensin I complex, subunit H
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
2146 EZH2 enhancer of zeste homolog 2 (Drosophila)
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
10051 SMC4 structural maintenance of chromosomes 4
5933 RBL1 retinoblastoma-like 1 (p107)
64946 CENPH centromere protein H
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
7468 WHSC1 Wolf-Hirschhorn syndrome candidate 1
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0007093: 9 genes, expected 0.420709, P=2.35856e-10, P adjusted = 2.74564e-05
9735 KNTC1 kinetochore associated 1
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
1063 CENPF centromere protein F, 350/400ka (mitosin)
7272 TTK TTK protein kinase
11130 ZWINT ZW10 interactor
51512 GTSE1 G-2 and S-phase expressed 1
890 CCNA2 cyclin A2
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)


MSCs batch 2 repressed and GO:0051716: 22 genes, expected 4.30608, P=4.48624e-10, P adjusted = 5.22252e-05
10635 RAD51AP1 RAD51 associated protein 1
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
2177 FANCD2 Fanconi anemia, complementation group D2
3162 HMOX1 heme oxygenase (decycling) 1
56852 RAD18 RAD18 homolog (S. cerevisiae)
55215 FANCI Fanconi anemia, complementation group I
5167 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
9232 PTTG1 pituitary tumor-transforming 1
2956 MSH6 mutS homolog 6 (E. coli)
7298 TYMS thymidylate synthetase
23049 SMG1 PI-3-kinase-related kinase SMG-1
51512 GTSE1 G-2 and S-phase expressed 1
890 CCNA2 cyclin A2
29128 UHRF1 ubiquitin-like with PHD and ring finger domains 1
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
55247 NEIL3 nei endonuclease VIII-like 3 (E. coli)
9156 EXO1 exonuclease 1
3148 HMGB2 high-mobility group box 2
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0034984: 20 genes, expected 3.5389, P=4.97885e-10, P adjusted = 5.79597e-05
10635 RAD51AP1 RAD51 associated protein 1
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
2177 FANCD2 Fanconi anemia, complementation group D2
56852 RAD18 RAD18 homolog (S. cerevisiae)
55215 FANCI Fanconi anemia, complementation group I
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
9232 PTTG1 pituitary tumor-transforming 1
2956 MSH6 mutS homolog 6 (E. coli)
7298 TYMS thymidylate synthetase
23049 SMG1 PI-3-kinase-related kinase SMG-1
51512 GTSE1 G-2 and S-phase expressed 1
890 CCNA2 cyclin A2
29128 UHRF1 ubiquitin-like with PHD and ring finger domains 1
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
55247 NEIL3 nei endonuclease VIII-like 3 (E. coli)
9156 EXO1 exonuclease 1
3148 HMGB2 high-mobility group box 2
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0030554: 47 genes, expected 17.6079, P=5.17068e-10, P adjusted = 6.0193e-05
9833 MELK maternal embryonic leucine zipper kinase
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9212 AURKB aurora kinase B
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
3070 HELLS helicase, lymphoid-specific
11004 KIF2C kinesin family member 2C
5167 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29028 ATAD2 ATPase family, AAA domain containing 2
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
10733 PLK4 polo-like kinase 4 (Drosophila)
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
4176 MCM7 minichromosome maintenance complex component 7
146909 KIF18B kinesin family member 18B
63979 FIGNL1 fidgetin-like 1
4171 MCM2 minichromosome maintenance complex component 2
7083 TK1 thymidine kinase 1, soluble
7272 TTK TTK protein kinase
2956 MSH6 mutS homolog 6 (E. coli)
6781 STC1 stanniocalcin 1
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
55872 PBK PDZ binding kinase
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
4174 MCM5 minichromosome maintenance complex component 5
10051 SMC4 structural maintenance of chromosomes 4
26577 PCOLCE2 procollagen C-endopeptidase enhancer 2
9319 TRIP13 thyroid hormone receptor interactor 13
4173 MCM4 minichromosome maintenance complex component 4
203447 NRK Nik related kinase
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B
6240 RRM1 ribonucleotide reductase M1
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0000922: 8 genes, expected 0.321718, P=6.33288e-10, P adjusted = 7.37223e-05
9735 KNTC1 kinetochore associated 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
3832 KIF11 kinesin family member 11
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
1063 CENPF centromere protein F, 350/400ka (mitosin)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)


MSCs batch 2 repressed and GO:0033554: 21 genes, expected 4.1081, P=1.12459e-09, P adjusted = 0.000130915
10635 RAD51AP1 RAD51 associated protein 1
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
2177 FANCD2 Fanconi anemia, complementation group D2
3162 HMOX1 heme oxygenase (decycling) 1
56852 RAD18 RAD18 homolog (S. cerevisiae)
55215 FANCI Fanconi anemia, complementation group I
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
9232 PTTG1 pituitary tumor-transforming 1
2956 MSH6 mutS homolog 6 (E. coli)
7298 TYMS thymidylate synthetase
23049 SMG1 PI-3-kinase-related kinase SMG-1
51512 GTSE1 G-2 and S-phase expressed 1
890 CCNA2 cyclin A2
29128 UHRF1 ubiquitin-like with PHD and ring finger domains 1
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
55247 NEIL3 nei endonuclease VIII-like 3 (E. coli)
9156 EXO1 exonuclease 1
3148 HMGB2 high-mobility group box 2
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0005876: 7 genes, expected 0.247476, P=2.75979e-09, P adjusted = 0.000321273
9735 KNTC1 kinetochore associated 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
3832 KIF11 kinesin family member 11
332 BIRC5 baculoviral IAP repeat-containing 5
10615 SPAG5 sperm associated antigen 5
24137 KIF4A kinesin family member 4A
9055 PRC1 protein regulator of cytokinesis 1


MSCs batch 2 repressed and GO:0032555: 50 genes, expected 20.5529, P=3.06094e-09, P adjusted = 0.000356331
9833 MELK maternal embryonic leucine zipper kinase
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9212 AURKB aurora kinase B
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
3070 HELLS helicase, lymphoid-specific
8654 PDE5A phosphodiesterase 5A, cGMP-specific
11004 KIF2C kinesin family member 2C
5167 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29028 ATAD2 ATPase family, AAA domain containing 2
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
10733 PLK4 polo-like kinase 4 (Drosophila)
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
4176 MCM7 minichromosome maintenance complex component 7
146909 KIF18B kinesin family member 18B
63979 FIGNL1 fidgetin-like 1
4171 MCM2 minichromosome maintenance complex component 2
7083 TK1 thymidine kinase 1, soluble
7272 TTK TTK protein kinase
2956 MSH6 mutS homolog 6 (E. coli)
6781 STC1 stanniocalcin 1
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
55872 PBK PDZ binding kinase
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
4174 MCM5 minichromosome maintenance complex component 5
10051 SMC4 structural maintenance of chromosomes 4
26577 PCOLCE2 procollagen C-endopeptidase enhancer 2
9319 TRIP13 thyroid hormone receptor interactor 13
4173 MCM4 minichromosome maintenance complex component 4
203447 NRK Nik related kinase
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
4599 MX1 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
2669 GEM GTP binding protein overexpressed in skeletal muscle
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B
6240 RRM1 ribonucleotide reductase M1
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0032553: 50 genes, expected 20.5529, P=3.06094e-09, P adjusted = 0.000356331
9833 MELK maternal embryonic leucine zipper kinase
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9212 AURKB aurora kinase B
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
3070 HELLS helicase, lymphoid-specific
8654 PDE5A phosphodiesterase 5A, cGMP-specific
11004 KIF2C kinesin family member 2C
5167 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29028 ATAD2 ATPase family, AAA domain containing 2
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
10733 PLK4 polo-like kinase 4 (Drosophila)
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
4176 MCM7 minichromosome maintenance complex component 7
146909 KIF18B kinesin family member 18B
63979 FIGNL1 fidgetin-like 1
4171 MCM2 minichromosome maintenance complex component 2
7083 TK1 thymidine kinase 1, soluble
7272 TTK TTK protein kinase
2956 MSH6 mutS homolog 6 (E. coli)
6781 STC1 stanniocalcin 1
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
55872 PBK PDZ binding kinase
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
4174 MCM5 minichromosome maintenance complex component 5
10051 SMC4 structural maintenance of chromosomes 4
26577 PCOLCE2 procollagen C-endopeptidase enhancer 2
9319 TRIP13 thyroid hormone receptor interactor 13
4173 MCM4 minichromosome maintenance complex component 4
203447 NRK Nik related kinase
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
4599 MX1 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
2669 GEM GTP binding protein overexpressed in skeletal muscle
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B
6240 RRM1 ribonucleotide reductase M1
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0006281: 18 genes, expected 3.16769, P=3.45937e-09, P adjusted = 0.000402712
10635 RAD51AP1 RAD51 associated protein 1
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
2177 FANCD2 Fanconi anemia, complementation group D2
56852 RAD18 RAD18 homolog (S. cerevisiae)
55215 FANCI Fanconi anemia, complementation group I
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
9232 PTTG1 pituitary tumor-transforming 1
2956 MSH6 mutS homolog 6 (E. coli)
7298 TYMS thymidylate synthetase
23049 SMG1 PI-3-kinase-related kinase SMG-1
29128 UHRF1 ubiquitin-like with PHD and ring finger domains 1
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
55247 NEIL3 nei endonuclease VIII-like 3 (E. coli)
9156 EXO1 exonuclease 1
3148 HMGB2 high-mobility group box 2
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0003777: 11 genes, expected 0.977529, P=3.59778e-09, P adjusted = 0.000418825
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
11004 KIF2C kinesin family member 2C
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
146909 KIF18B kinesin family member 18B
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0007018: 12 genes, expected 1.23738, P=3.96896e-09, P adjusted = 0.000462035
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
11004 KIF2C kinesin family member 2C
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
146909 KIF18B kinesin family member 18B
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
4741 NEFM neurofilament, medium polypeptide
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0031577: 5 genes, expected 0.0866165, P=5.73651e-09, P adjusted = 0.000667798
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
1063 CENPF centromere protein F, 350/400ka (mitosin)
7272 TTK TTK protein kinase
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)


MSCs batch 2 repressed and GO:0030261: 7 genes, expected 0.284597, P=8.45557e-09, P adjusted = 0.000984329
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
113130 CDCA5 cell division cycle associated 5
51203 NUSAP1 nucleolar and spindle associated protein 1
23397 NCAPH non-SMC condensin I complex, subunit H
54892 NCAPG2 non-SMC condensin II complex, subunit G2
64151 NCAPG non-SMC condensin I complex, subunit G
10051 SMC4 structural maintenance of chromosomes 4


MSCs batch 2 repressed and GO:0006270: 7 genes, expected 0.284597, P=8.45557e-09, P adjusted = 0.000984329
4176 MCM7 minichromosome maintenance complex component 7
4171 MCM2 minichromosome maintenance complex component 2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
4174 MCM5 minichromosome maintenance complex component 5
4173 MCM4 minichromosome maintenance complex component 4
9134 CCNE2 cyclin E2


MSCs batch 2 repressed and GO:0017076: 50 genes, expected 21.4438, P=1.2359e-08, P adjusted = 0.00143873
9833 MELK maternal embryonic leucine zipper kinase
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9212 AURKB aurora kinase B
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
3070 HELLS helicase, lymphoid-specific
8654 PDE5A phosphodiesterase 5A, cGMP-specific
11004 KIF2C kinesin family member 2C
5167 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29028 ATAD2 ATPase family, AAA domain containing 2
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
10733 PLK4 polo-like kinase 4 (Drosophila)
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
4176 MCM7 minichromosome maintenance complex component 7
146909 KIF18B kinesin family member 18B
63979 FIGNL1 fidgetin-like 1
4171 MCM2 minichromosome maintenance complex component 2
7083 TK1 thymidine kinase 1, soluble
7272 TTK TTK protein kinase
2956 MSH6 mutS homolog 6 (E. coli)
6781 STC1 stanniocalcin 1
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
55872 PBK PDZ binding kinase
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
4174 MCM5 minichromosome maintenance complex component 5
10051 SMC4 structural maintenance of chromosomes 4
26577 PCOLCE2 procollagen C-endopeptidase enhancer 2
9319 TRIP13 thyroid hormone receptor interactor 13
4173 MCM4 minichromosome maintenance complex component 4
203447 NRK Nik related kinase
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
4599 MX1 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
2669 GEM GTP binding protein overexpressed in skeletal muscle
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B
6240 RRM1 ribonucleotide reductase M1
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0051303: 5 genes, expected 0.0989903, P=1.51428e-08, P adjusted = 0.0017628
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
332 BIRC5 baculoviral IAP repeat-containing 5
113130 CDCA5 cell division cycle associated 5
1062 CENPE centromere protein E, 312kDa
1063 CENPF centromere protein F, 350/400ka (mitosin)


MSCs batch 2 repressed and GO:0050000: 5 genes, expected 0.0989903, P=1.51428e-08, P adjusted = 0.0017628
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
332 BIRC5 baculoviral IAP repeat-containing 5
113130 CDCA5 cell division cycle associated 5
1062 CENPE centromere protein E, 312kDa
1063 CENPF centromere protein F, 350/400ka (mitosin)


MSCs batch 2 repressed and GO:0006996: 32 genes, expected 10.4064, P=1.68919e-08, P adjusted = 0.00196641
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
26271 FBXO5 F-box protein 5
3832 KIF11 kinesin family member 11
3070 HELLS helicase, lymphoid-specific
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
11004 KIF2C kinesin family member 2C
113130 CDCA5 cell division cycle associated 5
11013 TMSL8 thymosin-like 8
1062 CENPE centromere protein E, 312kDa
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)
23136 EPB41L3 erythrocyte membrane protein band 4.1-like 3
2537 IFI6 interferon, alpha-inducible protein 6
1058 CENPA centromere protein A
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
822 CAPG capping protein (actin filament), gelsolin-like
4171 MCM2 minichromosome maintenance complex component 2
23397 NCAPH non-SMC condensin I complex, subunit H
9232 PTTG1 pituitary tumor-transforming 1
54892 NCAPG2 non-SMC condensin II complex, subunit G2
2146 EZH2 enhancer of zeste homolog 2 (Drosophila)
11130 ZWINT ZW10 interactor
64151 NCAPG non-SMC condensin I complex, subunit G
54443 ANLN anillin, actin binding protein
24137 KIF4A kinesin family member 4A
10051 SMC4 structural maintenance of chromosomes 4
5933 RBL1 retinoblastoma-like 1 (p107)
64946 CENPH centromere protein H
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
7468 WHSC1 Wolf-Hirschhorn syndrome candidate 1
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0005875: 12 genes, expected 1.41061, P=1.79116e-08, P adjusted = 0.00208512
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
11004 KIF2C kinesin family member 2C
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
146909 KIF18B kinesin family member 18B
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
6780 STAU1 staufen, RNA binding protein, homolog 1 (Drosophila)
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0006323: 11 genes, expected 1.16314, P=2.33482e-08, P adjusted = 0.00271801
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
3070 HELLS helicase, lymphoid-specific
113130 CDCA5 cell division cycle associated 5
51203 NUSAP1 nucleolar and spindle associated protein 1
1058 CENPA centromere protein A
4171 MCM2 minichromosome maintenance complex component 2
23397 NCAPH non-SMC condensin I complex, subunit H
54892 NCAPG2 non-SMC condensin II complex, subunit G2
64151 NCAPG non-SMC condensin I complex, subunit G
10051 SMC4 structural maintenance of chromosomes 4
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0030705: 12 genes, expected 1.52198, P=4.22839e-08, P adjusted = 0.00492235
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
11004 KIF2C kinesin family member 2C
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
146909 KIF18B kinesin family member 18B
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
4741 NEFM neurofilament, medium polypeptide
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0007076: 6 genes, expected 0.222728, P=5.54073e-08, P adjusted = 0.00645008
113130 CDCA5 cell division cycle associated 5
51203 NUSAP1 nucleolar and spindle associated protein 1
23397 NCAPH non-SMC condensin I complex, subunit H
54892 NCAPG2 non-SMC condensin II complex, subunit G2
64151 NCAPG non-SMC condensin I complex, subunit G
10051 SMC4 structural maintenance of chromosomes 4


MSCs batch 2 repressed and GO:0000166: 52 genes, expected 24.5743, P=1.41753e-07, P adjusted = 0.0165017
9833 MELK maternal embryonic leucine zipper kinase
983 CDC2 cell division cycle 2, G1 to S and G2 to M
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9212 AURKB aurora kinase B
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
3070 HELLS helicase, lymphoid-specific
8654 PDE5A phosphodiesterase 5A, cGMP-specific
11004 KIF2C kinesin family member 2C
5167 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
29028 ATAD2 ATPase family, AAA domain containing 2
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
5983 RFC3 replication factor C (activator 1) 3, 38kDa
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
10733 PLK4 polo-like kinase 4 (Drosophila)
27330 RPS6KA6 ribosomal protein S6 kinase, 90kDa, polypeptide 6
4288 MKI67 antigen identified by monoclonal antibody Ki-67
4176 MCM7 minichromosome maintenance complex component 7
146909 KIF18B kinesin family member 18B
63979 FIGNL1 fidgetin-like 1
4171 MCM2 minichromosome maintenance complex component 2
89795 NAV3 neuron navigator 3
7083 TK1 thymidine kinase 1, soluble
7272 TTK TTK protein kinase
2956 MSH6 mutS homolog 6 (E. coli)
6781 STC1 stanniocalcin 1
6790 AURKA aurora kinase A
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
55872 PBK PDZ binding kinase
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
11113 CIT citron (rho-interacting, serine/threonine kinase 21)
4174 MCM5 minichromosome maintenance complex component 5
10051 SMC4 structural maintenance of chromosomes 4
26577 PCOLCE2 procollagen C-endopeptidase enhancer 2
9319 TRIP13 thyroid hormone receptor interactor 13
4173 MCM4 minichromosome maintenance complex component 4
203447 NRK Nik related kinase
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
4599 MX1 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
2669 GEM GTP binding protein overexpressed in skeletal muscle
54821 ERCC6L excision repair cross-complementing rodent repair deficiency, complementation group 6-like
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B
6240 RRM1 ribonucleotide reductase M1
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0007052: 5 genes, expected 0.148485, P=2.05644e-07, P adjusted = 0.0239394
3832 KIF11 kinesin family member 11
3925 STMN1 stathmin 1/oncoprotein 18
7272 TTK TTK protein kinase
9493 KIF23 kinesin family member 23
9055 PRC1 protein regulator of cytokinesis 1


MSCs batch 2 repressed and GO:0007094: 4 genes, expected 0.0742427, P=3.3671e-07, P adjusted = 0.0391971
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
1063 CENPF centromere protein F, 350/400ka (mitosin)
7272 TTK TTK protein kinase
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)


MSCs batch 2 repressed and GO:0048015: 10 genes, expected 1.23738, P=4.58644e-07, P adjusted = 0.0533916
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
11130 ZWINT ZW10 interactor
7298 TYMS thymidylate synthetase
6790 AURKA aurora kinase A
10615 SPAG5 sperm associated antigen 5
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0045840: 5 genes, expected 0.185607, P=7.56373e-07, P adjusted = 0.0880509
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
332 BIRC5 baculoviral IAP repeat-containing 5
51203 NUSAP1 nucleolar and spindle associated protein 1
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)


MSCs batch 2 repressed and GO:0003774: 11 genes, expected 1.7447, P=1.4923e-06, P adjusted = 0.173722
10112 KIF20A kinesin family member 20A
3832 KIF11 kinesin family member 11
11004 KIF2C kinesin family member 2C
1062 CENPE centromere protein E, 312kDa
9928 KIF14 kinesin family member 14
146909 KIF18B kinesin family member 18B
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15
24137 KIF4A kinesin family member 4A
81930 KIF18A kinesin family member 18A
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0005657: 6 genes, expected 0.383587, P=1.92028e-06, P adjusted = 0.223543
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa


MSCs batch 2 repressed and GO:0051325: 9 genes, expected 1.16314, P=2.50849e-06, P adjusted = 0.292018
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
332 BIRC5 baculoviral IAP repeat-containing 5
113130 CDCA5 cell division cycle associated 5
1063 CENPF centromere protein F, 350/400ka (mitosin)
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
1033 CDKN3 cyclin-dependent kinase inhibitor 3
8914 TIMELESS timeless homolog (Drosophila)


MSCs batch 2 repressed and GO:0008283: 27 genes, expected 9.9609, P=2.73342e-06, P adjusted = 0.318203
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
995 CDC25C cell division cycle 25 homolog C (S. pombe)
3070 HELLS helicase, lymphoid-specific
3162 HMOX1 heme oxygenase (decycling) 1
11004 KIF2C kinesin family member 2C
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
2250 FGF5 fibroblast growth factor 5
29127 RACGAP1 Rac GTPase activating protein 1
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
22974 TPX2 TPX2, microtubule-associated, homolog (Xenopus laevis)
646 BNC1 basonuclin 1
4288 MKI67 antigen identified by monoclonal antibody Ki-67
1063 CENPF centromere protein F, 350/400ka (mitosin)
8519 IFITM1 interferon induced transmembrane protein 1 (9-27)
6941 TCF19 transcription factor 19 (SC1)
54892 NCAPG2 non-SMC condensin II complex, subunit G2
83879 CDCA7 cell division cycle associated 7
7272 TTK TTK protein kinase
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
5918 RARRES1 retinoic acid receptor responder (tazarotene induced) 1
56992 KIF15 kinesin family member 15
1033 CDKN3 cyclin-dependent kinase inhibitor 3
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
29128 UHRF1 ubiquitin-like with PHD and ring finger domains 1
993 CDC25A cell division cycle 25 homolog A (S. pombe)
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
8914 TIMELESS timeless homolog (Drosophila)


MSCs batch 2 repressed and GO:0000785: 11 genes, expected 1.93031, P=4.01098e-06, P adjusted = 0.466926
3070 HELLS helicase, lymphoid-specific
56852 RAD18 RAD18 homolog (S. cerevisiae)
1063 CENPF centromere protein F, 350/400ka (mitosin)
4176 MCM7 minichromosome maintenance complex component 7
7112 TMPO thymopoietin
1058 CENPA centromere protein A
4171 MCM2 minichromosome maintenance complex component 2
2956 MSH6 mutS homolog 6 (E. coli)
11339 OIP5 Opa interacting protein 5
8914 TIMELESS timeless homolog (Drosophila)
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0006950: 35 genes, expected 15.4796, P=5.20398e-06, P adjusted = 0.605806
10635 RAD51AP1 RAD51 associated protein 1
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
2177 FANCD2 Fanconi anemia, complementation group D2
3162 HMOX1 heme oxygenase (decycling) 1
51514 DTL denticleless homolog (Drosophila)
5742 PTGS1 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
56852 RAD18 RAD18 homolog (S. cerevisiae)
55215 FANCI Fanconi anemia, complementation group I
5983 RFC3 replication factor C (activator 1) 3, 38kDa
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
7056 THBD thrombomodulin
154 ADRB2 adrenergic, beta-2-, receptor, surface
9232 PTTG1 pituitary tumor-transforming 1
2956 MSH6 mutS homolog 6 (E. coli)
7298 TYMS thymidylate synthetase
23049 SMG1 PI-3-kinase-related kinase SMG-1
5743 PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
51512 GTSE1 G-2 and S-phase expressed 1
10460 TACC3 transforming, acidic coiled-coil containing protein 3
890 CCNA2 cyclin A2
7980 TFPI2 tissue factor pathway inhibitor 2
7716 VEZF1 vascular endothelial zinc finger 1
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
29128 UHRF1 ubiquitin-like with PHD and ring finger domains 1
5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide
4599 MX1 myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)
136 ADORA2B adenosine A2b receptor
8914 TIMELESS timeless homolog (Drosophila)
5985 RFC5 replication factor C (activator 1) 5, 36.5kDa
55247 NEIL3 nei endonuclease VIII-like 3 (E. coli)
9156 EXO1 exonuclease 1
3148 HMGB2 high-mobility group box 2
7133 TNFRSF1B tumor necrosis factor receptor superfamily, member 1B
10721 POLQ polymerase (DNA directed), theta


MSCs batch 2 repressed and GO:0007096: 4 genes, expected 0.136112, P=7.05426e-06, P adjusted = 0.821201
9735 KNTC1 kinetochore associated 1
332 BIRC5 baculoviral IAP repeat-containing 5
54443 ANLN anillin, actin binding protein
11065 UBE2C ubiquitin-conjugating enzyme E2C


MSCs batch 2 repressed and GO:0000940: 3 genes, expected 0.0494951, P=7.41997e-06, P adjusted = 0.863774
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
1062 CENPE centromere protein E, 312kDa
1063 CENPF centromere protein F, 350/400ka (mitosin)


MSCs batch 2 repressed and GO:0034508: 3 genes, expected 0.0494951, P=7.41997e-06, P adjusted = 0.863774
3070 HELLS helicase, lymphoid-specific
1062 CENPE centromere protein E, 312kDa
1063 CENPF centromere protein F, 350/400ka (mitosin)


MSCs batch 2 repressed and GO:0051383: 3 genes, expected 0.0494951, P=7.41997e-06, P adjusted = 0.863774
1062 CENPE centromere protein E, 312kDa
1063 CENPF centromere protein F, 350/400ka (mitosin)
64946 CENPH centromere protein H


MSCs batch 2 repressed and GO:0005815: 12 genes, expected 2.52425, P=9.48666e-06, P adjusted = 1
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
891 CCNB1 cyclin B1
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
332 BIRC5 baculoviral IAP repeat-containing 5
4751 NEK2 NIMA (never in mitosis gene a)-related kinase 2
8318 CDC45L CDC45 cell division cycle 45-like (S. cerevisiae)
6790 AURKA aurora kinase A
10460 TACC3 transforming, acidic coiled-coil containing protein 3
56992 KIF15 kinesin family member 15
699 BUB1 BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)
9585 KIF20B kinesin family member 20B


MSCs batch 2 repressed and GO:0010458: 4 genes, expected 0.148485, P=1.04786e-05, P adjusted = 1
9735 KNTC1 kinetochore associated 1
332 BIRC5 baculoviral IAP repeat-containing 5
54443 ANLN anillin, actin binding protein
11065 UBE2C ubiquitin-conjugating enzyme E2C


MSCs batch 2 repressed and GO:0051640: 7 genes, expected 0.767175, P=1.12476e-05, P adjusted = 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
332 BIRC5 baculoviral IAP repeat-containing 5
113130 CDCA5 cell division cycle associated 5
259266 ASPM asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
1062 CENPE centromere protein E, 312kDa
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)


MSCs batch 2 repressed and GO:0051329: 8 genes, expected 1.10127, P=1.46294e-05, P adjusted = 1
891 CCNB1 cyclin B1
995 CDC25C cell division cycle 25 homolog C (S. pombe)
332 BIRC5 baculoviral IAP repeat-containing 5
113130 CDCA5 cell division cycle associated 5
1063 CENPF centromere protein F, 350/400ka (mitosin)
51512 GTSE1 G-2 and S-phase expressed 1
990 CDC6 cell division cycle 6 homolog (S. cerevisiae)
1033 CDKN3 cyclin-dependent kinase inhibitor 3


MSCs batch 2 repressed and GO:0051310: 3 genes, expected 0.0618689, P=1.83799e-05, P adjusted = 1
113130 CDCA5 cell division cycle associated 5
1062 CENPE centromere protein E, 312kDa
1063 CENPF centromere protein F, 350/400ka (mitosin)


MSCs batch 2 repressed and GO:0051439: 7 genes, expected 0.829044, P=1.88718e-05, P adjusted = 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
26271 FBXO5 F-box protein 5
891 CCNB1 cyclin B1
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C


MSCs batch 2 repressed and GO:0051438: 7 genes, expected 0.890913, P=3.03331e-05, P adjusted = 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
26271 FBXO5 F-box protein 5
891 CCNB1 cyclin B1
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C


MSCs batch 2 repressed and GO:0045787: 5 genes, expected 0.383587, P=3.6402e-05, P adjusted = 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
332 BIRC5 baculoviral IAP repeat-containing 5
51203 NUSAP1 nucleolar and spindle associated protein 1
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)


MSCs batch 2 repressed and GO:0043596: 4 genes, expected 0.197981, P=3.70528e-05, P adjusted = 1
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)


MSCs batch 2 repressed and GO:0051656: 6 genes, expected 0.631063, P=3.81933e-05, P adjusted = 1
9787 DLGAP5 discs, large (Drosophila) homolog-associated protein 5
332 BIRC5 baculoviral IAP repeat-containing 5
113130 CDCA5 cell division cycle associated 5
1062 CENPE centromere protein E, 312kDa
51203 NUSAP1 nucleolar and spindle associated protein 1
1063 CENPF centromere protein F, 350/400ka (mitosin)


MSCs batch 2 repressed and GO:0044454: 7 genes, expected 0.928034, P=3.96042e-05, P adjusted = 1
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
2956 MSH6 mutS homolog 6 (E. coli)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
8914 TIMELESS timeless homolog (Drosophila)


MSCs batch 2 repressed and GO:0051340: 7 genes, expected 0.928034, P=3.96042e-05, P adjusted = 1
983 CDC2 cell division cycle 2, G1 to S and G2 to M
26271 FBXO5 F-box protein 5
891 CCNB1 cyclin B1
4085 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast)
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
991 CDC20 cell division cycle 20 homolog (S. cerevisiae)
11065 UBE2C ubiquitin-conjugating enzyme E2C


MSCs batch 2 repressed and GO:0005871: 4 genes, expected 0.210354, P=4.79837e-05, P adjusted = 1
3832 KIF11 kinesin family member 11
11004 KIF2C kinesin family member 2C
9493 KIF23 kinesin family member 23
56992 KIF15 kinesin family member 15


MSCs batch 2 repressed and GO:0000228: 8 genes, expected 1.29925, P=4.87366e-05, P adjusted = 1
10714 POLD3 polymerase (DNA-directed), delta 3, accessory subunit
4176 MCM7 minichromosome maintenance complex component 7
23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit)
4171 MCM2 minichromosome maintenance complex component 2
2956 MSH6 mutS homolog 6 (E. coli)
5557 PRIM1 primase, DNA, polypeptide 1 (49kDa)
8914 TIMELESS timeless homolog (Drosophila)
3148 HMGB2 high-mobility group box 2


MSCs batch 2 repressed and GO:0000910: 5 genes, expected 0.420709, P=5.78369e-05, P adjusted = 1
332 BIRC5 baculoviral IAP repeat-containing 5
29127 RACGAP1 Rac GTPase activating protein 1
51203 NUSAP1 nucleolar and spindle associated protein 1
54443 ANLN anillin, actin binding protein
9055 PRC1 protein regulator of cytokinesis 1


MSCs batch 2 repressed and GO:0019932: 11 genes, expected 2.72223, P=9.79473e-05, P adjusted = 1
7153 TOP2A topoisomerase (DNA) II alpha 170kDa
701 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast)
10403 NDC80 NDC80 homolog, kinetochore complex component (S. cerevisiae)
154 ADRB2 adrenergic, beta-2-, receptor, surface
11130 ZWINT ZW10 interactor
7298 TYMS thymidylate synthetase
6790 AURKA aurora kinase A
10615 SPAG5 sperm associated antigen 5
11065 UBE2C ubiquitin-conjugating enzyme E2C
3479 IGF1 insulin-like growth factor 1 (somatomedin C)
3148 HMGB2 high-mobility group box 2


MSCs batch 2 induced and GO:0048731: 47 genes, expected 15.7977, P=6.28008e-12, P adjusted = 7.31077e-07
1382 CRABP2 cellular retinoic acid binding protein 2
348 APOE apolipoprotein E
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
4879 NPPB natriuretic peptide precursor B
2261 FGFR3 fibroblast growth factor receptor 3
23493 HEY2 hairy/enhancer-of-split related with YRPW motif 2
5493 PPL periplakin
56130 PCDHB6 protocadherin beta 6
11341 SCRG1 scrapie responsive protein 1
3714 JAG2 jagged 2
10570 DPYSL4 dihydropyrimidinase-like 4
249 ALPL alkaline phosphatase, liver/bone/kidney
26508 HEYL hairy/enhancer-of-split related with YRPW motif-like
2487 FRZB frizzled-related protein
2596 GAP43 growth associated protein 43
8313 AXIN2 axin 2
57801 HES4 hairy and enhancer of split 4 (Drosophila)
1306 COL15A1 collagen, type XV, alpha 1
2824 GPM6B glycoprotein M6B
652 BMP4 bone morphogenetic protein 4
51176 LEF1 lymphoid enhancer-binding factor 1
50964 SOST sclerosteosis
7852 CXCR4 chemokine (C-X-C motif) receptor 4
3872 KRT17 keratin 17
9935 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)
9118 INA internexin neuronal intermediate filament protein, alpha
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
3213 HOXB3 homeobox B3
51083 GAL galanin prepropeptide
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
30812 SOX8 SRY (sex determining region Y)-box 8
4744 NEFH neurofilament, heavy polypeptide
10202 DHRS2 dehydrogenase/reductase (SDR family) member 2
3955 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
56126 PCDHB10 protocadherin beta 10
182 JAG1 jagged 1 (Alagille syndrome)
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3589 IL11 interleukin 11
5734 PTGER4 prostaglandin E receptor 4 (subtype EP4)
80303 EFHD1 EF-hand domain family, member D1
3897 L1CAM L1 cell adhesion molecule
6586 SLIT3 slit homolog 3 (Drosophila)
10417 SPON2 spondin 2, extracellular matrix protein
9355 LHX2 LIM homeobox 2
596 BCL2 B-cell CLL/lymphoma 2
3861 KRT14 keratin 14


MSCs batch 2 induced and GO:0005576: 46 genes, expected 16.0554, P=4.04832e-11, P adjusted = 4.71273e-06
348 APOE apolipoprotein E
4879 NPPB natriuretic peptide precursor B
55118 CRTAC1 cartilage acidic protein 1
27151 CPAMD8 C3 and PZP-like, alpha-2-macroglobulin domain containing 8
5730 PTGDS prostaglandin D2 synthase 21kDa (brain)
9547 CXCL14 chemokine (C-X-C motif) ligand 14
2239 GPC4 glypican 4
11341 SCRG1 scrapie responsive protein 1
6422 SFRP1 secreted frizzled-related protein 1
25891 DKFZP586H2123 regeneration associated muscle protease
4885 NPTX2 neuronal pentraxin II
25878 MXRA5 matrix-remodelling associated 5
2487 FRZB frizzled-related protein
718 C3 complement component 3
1306 COL15A1 collagen, type XV, alpha 1
1191 CLU clusterin
652 BMP4 bone morphogenetic protein 4
7292 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
157869 RPESP RPE-spondin
7481 WNT11 wingless-type MMTV integration site family, member 11
50964 SOST sclerosteosis
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
2263 FGFR2 fibroblast growth factor receptor 2
8788 DLK1 delta-like 1 homolog (Drosophila)
51083 GAL galanin prepropeptide
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
55959 SULF2 sulfatase 2
90139 TSPAN18 tetraspanin 18
256691 MAMDC2 MAM domain containing 2
834 CASP1 caspase 1, apoptosis-related cysteine peptidase (interleukin 1, beta, convertase)
3955 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
182 JAG1 jagged 1 (Alagille syndrome)
9388 LIPG lipase, endothelial
1525 CXADR coxsackie virus and adenovirus receptor
3589 IL11 interleukin 11
5919 RARRES2 retinoic acid receptor responder (tazarotene induced) 2
83872 HMCN1 hemicentin 1
1299 COL9A3 collagen, type IX, alpha 3
6586 SLIT3 slit homolog 3 (Drosophila)
11197 WIF1 WNT inhibitory factor 1
10417 SPON2 spondin 2, extracellular matrix protein
8532 CPZ carboxypeptidase Z
7093 TLL2 tolloid-like 2
3977 LIFR leukemia inhibitory factor receptor alpha
80310 PDGFD platelet derived growth factor D
2266 FGG fibrinogen gamma chain


MSCs batch 2 induced and GO:0007399: 26 genes, expected 6.67442, P=3.06728e-09, P adjusted = 0.000357069
348 APOE apolipoprotein E
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
23493 HEY2 hairy/enhancer-of-split related with YRPW motif 2
56130 PCDHB6 protocadherin beta 6
11341 SCRG1 scrapie responsive protein 1
10570 DPYSL4 dihydropyrimidinase-like 4
26508 HEYL hairy/enhancer-of-split related with YRPW motif-like
2596 GAP43 growth associated protein 43
57801 HES4 hairy and enhancer of split 4 (Drosophila)
2824 GPM6B glycoprotein M6B
652 BMP4 bone morphogenetic protein 4
51176 LEF1 lymphoid enhancer-binding factor 1
7852 CXCR4 chemokine (C-X-C motif) receptor 4
9118 INA internexin neuronal intermediate filament protein, alpha
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
51083 GAL galanin prepropeptide
30812 SOX8 SRY (sex determining region Y)-box 8
4744 NEFH neurofilament, heavy polypeptide
56126 PCDHB10 protocadherin beta 10
182 JAG1 jagged 1 (Alagille syndrome)
80303 EFHD1 EF-hand domain family, member D1
3897 L1CAM L1 cell adhesion molecule
6586 SLIT3 slit homolog 3 (Drosophila)
10417 SPON2 spondin 2, extracellular matrix protein
9355 LHX2 LIM homeobox 2


MSCs batch 2 induced and GO:0009888: 17 genes, expected 3.01039, P=1.01235e-08, P adjusted = 0.0011785
1382 CRABP2 cellular retinoic acid binding protein 2
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
2261 FGFR3 fibroblast growth factor receptor 3
5493 PPL periplakin
3714 JAG2 jagged 2
249 ALPL alkaline phosphatase, liver/bone/kidney
8313 AXIN2 axin 2
652 BMP4 bone morphogenetic protein 4
51176 LEF1 lymphoid enhancer-binding factor 1
50964 SOST sclerosteosis
3872 KRT17 keratin 17
182 JAG1 jagged 1 (Alagille syndrome)
5734 PTGER4 prostaglandin E receptor 4 (subtype EP4)
9355 LHX2 LIM homeobox 2
596 BCL2 B-cell CLL/lymphoma 2
3861 KRT14 keratin 14


MSCs batch 2 induced and GO:0048869: 34 genes, expected 11.8206, P=2.13789e-08, P adjusted = 0.00248876
348 APOE apolipoprotein E
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
2261 FGFR3 fibroblast growth factor receptor 3
23493 HEY2 hairy/enhancer-of-split related with YRPW motif 2
5493 PPL periplakin
6422 SFRP1 secreted frizzled-related protein 1
3714 JAG2 jagged 2
2487 FRZB frizzled-related protein
2596 GAP43 growth associated protein 43
8313 AXIN2 axin 2
57801 HES4 hairy and enhancer of split 4 (Drosophila)
1306 COL15A1 collagen, type XV, alpha 1
2824 GPM6B glycoprotein M6B
652 BMP4 bone morphogenetic protein 4
1475 CSTA cystatin A (stefin A)
51176 LEF1 lymphoid enhancer-binding factor 1
7852 CXCR4 chemokine (C-X-C motif) receptor 4
9935 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)
9118 INA internexin neuronal intermediate filament protein, alpha
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
360 AQP3 aquaporin 3 (Gill blood group)
30812 SOX8 SRY (sex determining region Y)-box 8
10202 DHRS2 dehydrogenase/reductase (SDR family) member 2
182 JAG1 jagged 1 (Alagille syndrome)
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3589 IL11 interleukin 11
80303 EFHD1 EF-hand domain family, member D1
3897 L1CAM L1 cell adhesion molecule
6586 SLIT3 slit homolog 3 (Drosophila)
10417 SPON2 spondin 2, extracellular matrix protein
1739 DLG1 discs, large homolog 1 (Drosophila)
7093 TLL2 tolloid-like 2
58480 RHOU ras homolog gene family, member U


MSCs batch 2 induced and GO:0030154: 32 genes, expected 10.7711, P=2.81577e-08, P adjusted = 0.00327789
348 APOE apolipoprotein E
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
2261 FGFR3 fibroblast growth factor receptor 3
23493 HEY2 hairy/enhancer-of-split related with YRPW motif 2
5493 PPL periplakin
6422 SFRP1 secreted frizzled-related protein 1
3714 JAG2 jagged 2
2487 FRZB frizzled-related protein
2596 GAP43 growth associated protein 43
8313 AXIN2 axin 2
57801 HES4 hairy and enhancer of split 4 (Drosophila)
1306 COL15A1 collagen, type XV, alpha 1
2824 GPM6B glycoprotein M6B
652 BMP4 bone morphogenetic protein 4
1475 CSTA cystatin A (stefin A)
51176 LEF1 lymphoid enhancer-binding factor 1
7852 CXCR4 chemokine (C-X-C motif) receptor 4
9935 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)
9118 INA internexin neuronal intermediate filament protein, alpha
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
360 AQP3 aquaporin 3 (Gill blood group)
30812 SOX8 SRY (sex determining region Y)-box 8
10202 DHRS2 dehydrogenase/reductase (SDR family) member 2
182 JAG1 jagged 1 (Alagille syndrome)
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3589 IL11 interleukin 11
80303 EFHD1 EF-hand domain family, member D1
3897 L1CAM L1 cell adhesion molecule
6586 SLIT3 slit homolog 3 (Drosophila)
10417 SPON2 spondin 2, extracellular matrix protein
7093 TLL2 tolloid-like 2


MSCs batch 2 induced and GO:0048729: 8 genes, expected 0.736488, P=7.30652e-07, P adjusted = 0.0850567
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
5493 PPL periplakin
3714 JAG2 jagged 2
652 BMP4 bone morphogenetic protein 4
51176 LEF1 lymphoid enhancer-binding factor 1
182 JAG1 jagged 1 (Alagille syndrome)
596 BCL2 B-cell CLL/lymphoma 2


MSCs batch 2 induced and GO:0044421: 22 genes, expected 6.80331, P=1.31681e-06, P adjusted = 0.153293
348 APOE apolipoprotein E
4879 NPPB natriuretic peptide precursor B
9547 CXCL14 chemokine (C-X-C motif) ligand 14
2239 GPC4 glypican 4
11341 SCRG1 scrapie responsive protein 1
6422 SFRP1 secreted frizzled-related protein 1
1306 COL15A1 collagen, type XV, alpha 1
1191 CLU clusterin
652 BMP4 bone morphogenetic protein 4
7292 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
7481 WNT11 wingless-type MMTV integration site family, member 11
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
8788 DLK1 delta-like 1 homolog (Drosophila)
55959 SULF2 sulfatase 2
90139 TSPAN18 tetraspanin 18
3589 IL11 interleukin 11
83872 HMCN1 hemicentin 1
1299 COL9A3 collagen, type IX, alpha 3
6586 SLIT3 slit homolog 3 (Drosophila)
10417 SPON2 spondin 2, extracellular matrix protein
8532 CPZ carboxypeptidase Z
2266 FGG fibrinogen gamma chain


MSCs batch 2 induced and GO:0048513: 30 genes, expected 11.793, P=2.14223e-06, P adjusted = 0.249381
1382 CRABP2 cellular retinoic acid binding protein 2
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
4879 NPPB natriuretic peptide precursor B
2261 FGFR3 fibroblast growth factor receptor 3
23493 HEY2 hairy/enhancer-of-split related with YRPW motif 2
5493 PPL periplakin
3714 JAG2 jagged 2
249 ALPL alkaline phosphatase, liver/bone/kidney
2487 FRZB frizzled-related protein
8313 AXIN2 axin 2
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
51176 LEF1 lymphoid enhancer-binding factor 1
50964 SOST sclerosteosis
7852 CXCR4 chemokine (C-X-C motif) receptor 4
3872 KRT17 keratin 17
9935 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)
3213 HOXB3 homeobox B3
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
10202 DHRS2 dehydrogenase/reductase (SDR family) member 2
3955 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
182 JAG1 jagged 1 (Alagille syndrome)
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3589 IL11 interleukin 11
5734 PTGER4 prostaglandin E receptor 4 (subtype EP4)
6586 SLIT3 slit homolog 3 (Drosophila)
9355 LHX2 LIM homeobox 2
596 BCL2 B-cell CLL/lymphoma 2
3861 KRT14 keratin 14


MSCs batch 2 induced and GO:0007166: 32 genes, expected 13.1095, P=2.24971e-06, P adjusted = 0.261893
348 APOE apolipoprotein E
1028 CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
4879 NPPB natriuretic peptide precursor B
2261 FGFR3 fibroblast growth factor receptor 3
23493 HEY2 hairy/enhancer-of-split related with YRPW motif 2
6422 SFRP1 secreted frizzled-related protein 1
3714 JAG2 jagged 2
26508 HEYL hairy/enhancer-of-split related with YRPW motif-like
2487 FRZB frizzled-related protein
2596 GAP43 growth associated protein 43
8313 AXIN2 axin 2
718 C3 complement component 3
652 BMP4 bone morphogenetic protein 4
84634 KISS1R KISS1 receptor
27065 D4S234E DNA segment on chromosome 4 (unique) 234 expressed sequence
7481 WNT11 wingless-type MMTV integration site family, member 11
51176 LEF1 lymphoid enhancer-binding factor 1
50964 SOST sclerosteosis
7852 CXCR4 chemokine (C-X-C motif) receptor 4
2263 FGFR2 fibroblast growth factor receptor 2
51083 GAL galanin prepropeptide
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
3680 ITGA9 integrin, alpha 9
59352 LGR6 leucine-rich repeat-containing G protein-coupled receptor 6
182 JAG1 jagged 1 (Alagille syndrome)
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
5734 PTGER4 prostaglandin E receptor 4 (subtype EP4)
11197 WIF1 WNT inhibitory factor 1
8532 CPZ carboxypeptidase Z
8549 LGR5 leucine-rich repeat-containing G protein-coupled receptor 5
3977 LIFR leukemia inhibitory factor receptor alpha
51655 RASD1 RAS, dexamethasone-induced 1


MSCs batch 2 induced and GO:0008544: 9 genes, expected 1.28885, P=6.08278e-06, P adjusted = 0.708108
1382 CRABP2 cellular retinoic acid binding protein 2
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
5493 PPL periplakin
3714 JAG2 jagged 2
3872 KRT17 keratin 17
182 JAG1 jagged 1 (Alagille syndrome)
596 BCL2 B-cell CLL/lymphoma 2
3861 KRT14 keratin 14


MSCs batch 2 induced and GO:0007398: 9 genes, expected 1.38091, P=1.06495e-05, P adjusted = 1
1382 CRABP2 cellular retinoic acid binding protein 2
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
5493 PPL periplakin
3714 JAG2 jagged 2
3872 KRT17 keratin 17
182 JAG1 jagged 1 (Alagille syndrome)
596 BCL2 B-cell CLL/lymphoma 2
3861 KRT14 keratin 14


MSCs batch 2 induced and GO:0048730: 6 genes, expected 0.524748, P=1.3799e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
5493 PPL periplakin
3714 JAG2 jagged 2
182 JAG1 jagged 1 (Alagille syndrome)
596 BCL2 B-cell CLL/lymphoma 2


MSCs batch 2 induced and GO:0060113: 4 genes, expected 0.16571, P=1.92374e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
3714 JAG2 jagged 2
182 JAG1 jagged 1 (Alagille syndrome)


MSCs batch 2 induced and GO:0005509: 22 genes, expected 8.13819, P=2.24823e-05, P adjusted = 1
55118 CRTAC1 cartilage acidic protein 1
56130 PCDHB6 protocadherin beta 6
3714 JAG2 jagged 2
4885 NPTX2 neuronal pentraxin II
164633 CABP7 calcium binding protein 7
56129 PCDHB7 protocadherin beta 7
11240 PADI2 peptidyl arginine deiminase, type II
117248 GALNTL2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
8788 DLK1 delta-like 1 homolog (Drosophila)
57134 MAN1C1 mannosidase, alpha, class 1C, member 1
9752 PCDHA9 protocadherin alpha 9
3680 ITGA9 integrin, alpha 9
55959 SULF2 sulfatase 2
56126 PCDHB10 protocadherin beta 10
182 JAG1 jagged 1 (Alagille syndrome)
83872 HMCN1 hemicentin 1
80303 EFHD1 EF-hand domain family, member D1
6586 SLIT3 slit homolog 3 (Drosophila)
7093 TLL2 tolloid-like 2
57452 GALNTL1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1
2266 FGG fibrinogen gamma chain


MSCs batch 2 induced and GO:0042490: 4 genes, expected 0.184122, P=3.00234e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
3714 JAG2 jagged 2
182 JAG1 jagged 1 (Alagille syndrome)


MSCs batch 2 induced and GO:0035315: 4 genes, expected 0.193328, P=3.68215e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
3714 JAG2 jagged 2
182 JAG1 jagged 1 (Alagille syndrome)


MSCs batch 2 induced and GO:0008283: 20 genes, expected 7.41091, P=5.55562e-05, P adjusted = 1
348 APOE apolipoprotein E
3280 HES1 hairy and enhancer of split 1, (Drosophila)
1028 CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
1396 CRIP1 cysteine-rich protein 1 (intestinal)
2261 FGFR3 fibroblast growth factor receptor 3
27074 LAMP3 lysosomal-associated membrane protein 3
2239 GPC4 glypican 4
3714 JAG2 jagged 2
8313 AXIN2 axin 2
7292 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
84634 KISS1R KISS1 receptor
7852 CXCR4 chemokine (C-X-C motif) receptor 4
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
10202 DHRS2 dehydrogenase/reductase (SDR family) member 2
182 JAG1 jagged 1 (Alagille syndrome)
3589 IL11 interleukin 11
1739 DLG1 discs, large homolog 1 (Drosophila)
596 BCL2 B-cell CLL/lymphoma 2
3977 LIFR leukemia inhibitory factor receptor alpha
80310 PDGFD platelet derived growth factor D


MSCs batch 2 induced and GO:0009913: 5 genes, expected 0.432687, P=7.02493e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
5493 PPL periplakin
3714 JAG2 jagged 2
182 JAG1 jagged 1 (Alagille syndrome)


MSCs batch 2 induced and GO:0048839: 5 genes, expected 0.441893, P=7.78367e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
3714 JAG2 jagged 2
9935 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)
182 JAG1 jagged 1 (Alagille syndrome)


MSCs batch 2 induced and GO:0045595: 9 genes, expected 1.78598, P=8.0718e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
2261 FGFR3 fibroblast growth factor receptor 3
8313 AXIN2 axin 2
652 BMP4 bone morphogenetic protein 4
9935 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
360 AQP3 aquaporin 3 (Gill blood group)
182 JAG1 jagged 1 (Alagille syndrome)

MSCs batch 3 repressed and GO:0005576: 95 genes, expected 26.1548, P=5.5823e-30, P adjusted = 6.49847e-25
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
5069 PAPPA pregnancy-associated plasma protein A, pappalysin 1
5197 PF4V1 platelet factor 4 variant 1
10418 SPON1 spondin 1, extracellular matrix protein
1301 COL11A1 collagen, type XI, alpha 1
4582 MUC1 mucin 1, cell surface associated
2247 FGF2 fibroblast growth factor 2 (basic)
8076 MFAP5 microfibrillar associated protein 5
4811 NID1 nidogen 1
5673 PSG5 pregnancy specific beta-1-glycoprotein 5
7057 THBS1 thrombospondin 1
11341 SCRG1 scrapie responsive protein 1
1284 COL4A2 collagen, type IV, alpha 2
1282 COL4A1 collagen, type IV, alpha 1
182 JAG1 jagged 1 (Alagille syndrome)
11098 PRSS23 protease, serine, 23
1490 CTGF connective tissue growth factor
2192 FBLN1 fibulin 1
2200 FBN1 fibrillin 1
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
629 CFB complement factor B
1306 COL15A1 collagen, type XV, alpha 1
7058 THBS2 thrombospondin 2
8839 WISP2 WNT1 inducible signaling pathway protein 2
652 BMP4 bone morphogenetic protein 4
7123 CLEC3B C-type lectin domain family 3, member B
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
4015 LOX lysyl oxidase
6424 SFRP4 secreted frizzled-related protein 4
51232 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like)
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
10468 FST follistatin
5648 MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
7412 VCAM1 vascular cell adhesion molecule 1
6318 SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4
284 ANGPT1 angiopoietin 1
4653 MYOC myocilin, trabecular meshwork inducible glucocorticoid response
10516 FBLN5 fibulin 5
12 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
55801 IL26 interleukin 26
1278 COL1A2 collagen, type I, alpha 2
57493 HEG1 HEG homolog 1 (zebrafish)
1289 COL5A1 collagen, type V, alpha 1
3929 LBP lipopolysaccharide binding protein
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
151887 CCDC80 coiled-coil domain containing 80
1277 COL1A1 collagen, type I, alpha 1
3339 HSPG2 heparan sulfate proteoglycan 2
2202 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1
10875 FGL2 fibrinogen-like 2
81578 COL21A1 collagen, type XXI, alpha 1
9635 CLCA2 CLCA family member 2, chloride channel regulator
8532 CPZ carboxypeptidase Z
5168 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2
6347 CCL2 chemokine (C-C motif) ligand 2
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
7049 TGFBR3 transforming growth factor, beta receptor III
84623 KIRREL3 kin of IRRE like 3 (Drosophila)
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
79987 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
5806 PTX3 pentraxin-related gene, rapidly induced by IL-1 beta
1281 COL3A1 collagen, type III, alpha 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
4856 NOV nephroblastoma overexpressed gene
4803 NGF nerve growth factor (beta polypeptide)
127435 PODN podocan
1634 DCN decorin
25878 MXRA5 matrix-remodelling associated 5
1462 VCAN versican
718 C3 complement component 3
716 C1S complement component 1, s subcomponent
3485 IGFBP2 insulin-like growth factor binding protein 2, 36kDa
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
5678 PSG9 pregnancy specific beta-1-glycoprotein 9
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
3512 IGJ immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides
2263 FGFR2 fibroblast growth factor receptor 2
3575 IL7R interleukin 7 receptor
79875 THSD4 thrombospondin, type I, domain containing 4
165 AEBP1 AE binding protein 1
10082 GPC6 glypican 6
3381 IBSP integrin-binding sialoprotein
6590 SLPI secretory leukocyte peptidase inhibitor
2331 FMOD fibromodulin
715 C1R complement component 1, r subcomponent
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2
4256 MGP matrix Gla protein
23213 SULF1 sulfatase 1
1906 EDN1 endothelin 1
80310 PDGFD platelet derived growth factor D


MSCs batch 3 repressed and GO:0031012: 38 genes, expected 4.51411, P=3.79761e-24, P adjusted = 4.42087e-19
10418 SPON1 spondin 1, extracellular matrix protein
1301 COL11A1 collagen, type XI, alpha 1
8076 MFAP5 microfibrillar associated protein 5
4811 NID1 nidogen 1
1284 COL4A2 collagen, type IV, alpha 2
1282 COL4A1 collagen, type IV, alpha 1
1490 CTGF connective tissue growth factor
2192 FBLN1 fibulin 1
2200 FBN1 fibrillin 1
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
4015 LOX lysyl oxidase
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
10516 FBLN5 fibulin 5
1278 COL1A2 collagen, type I, alpha 2
1289 COL5A1 collagen, type V, alpha 1
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1277 COL1A1 collagen, type I, alpha 1
3339 HSPG2 heparan sulfate proteoglycan 2
2202 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1
81578 COL21A1 collagen, type XXI, alpha 1
8532 CPZ carboxypeptidase Z
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
1281 COL3A1 collagen, type III, alpha 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
127435 PODN podocan
1634 DCN decorin
1462 VCAN versican
79875 THSD4 thrombospondin, type I, domain containing 4
10082 GPC6 glypican 6
2331 FMOD fibromodulin
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2
4256 MGP matrix Gla protein


MSCs batch 3 repressed and GO:0005578: 37 genes, expected 4.31914, P=8.40076e-24, P adjusted = 9.7795e-19
10418 SPON1 spondin 1, extracellular matrix protein
1301 COL11A1 collagen, type XI, alpha 1
8076 MFAP5 microfibrillar associated protein 5
4811 NID1 nidogen 1
1284 COL4A2 collagen, type IV, alpha 2
1282 COL4A1 collagen, type IV, alpha 1
1490 CTGF connective tissue growth factor
2192 FBLN1 fibulin 1
2200 FBN1 fibrillin 1
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
4015 LOX lysyl oxidase
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
10516 FBLN5 fibulin 5
1278 COL1A2 collagen, type I, alpha 2
1289 COL5A1 collagen, type V, alpha 1
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1277 COL1A1 collagen, type I, alpha 1
3339 HSPG2 heparan sulfate proteoglycan 2
2202 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1
81578 COL21A1 collagen, type XXI, alpha 1
8532 CPZ carboxypeptidase Z
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
1281 COL3A1 collagen, type III, alpha 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
127435 PODN podocan
1634 DCN decorin
1462 VCAN versican
10082 GPC6 glypican 6
2331 FMOD fibromodulin
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2
4256 MGP matrix Gla protein


MSCs batch 3 repressed and GO:0044421: 54 genes, expected 11.0828, P=2.21362e-22, P adjusted = 2.57692e-17
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
10418 SPON1 spondin 1, extracellular matrix protein
1301 COL11A1 collagen, type XI, alpha 1
2247 FGF2 fibroblast growth factor 2 (basic)
8076 MFAP5 microfibrillar associated protein 5
4811 NID1 nidogen 1
11341 SCRG1 scrapie responsive protein 1
1284 COL4A2 collagen, type IV, alpha 2
1282 COL4A1 collagen, type IV, alpha 1
1490 CTGF connective tissue growth factor
2192 FBLN1 fibulin 1
2200 FBN1 fibrillin 1
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
4015 LOX lysyl oxidase
6424 SFRP4 secreted frizzled-related protein 4
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
7412 VCAM1 vascular cell adhesion molecule 1
4653 MYOC myocilin, trabecular meshwork inducible glucocorticoid response
10516 FBLN5 fibulin 5
55801 IL26 interleukin 26
1278 COL1A2 collagen, type I, alpha 2
1289 COL5A1 collagen, type V, alpha 1
3929 LBP lipopolysaccharide binding protein
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1277 COL1A1 collagen, type I, alpha 1
3339 HSPG2 heparan sulfate proteoglycan 2
2202 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1
10875 FGL2 fibrinogen-like 2
81578 COL21A1 collagen, type XXI, alpha 1
8532 CPZ carboxypeptidase Z
6347 CCL2 chemokine (C-C motif) ligand 2
7049 TGFBR3 transforming growth factor, beta receptor III
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
1281 COL3A1 collagen, type III, alpha 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
127435 PODN podocan
1634 DCN decorin
1462 VCAN versican
3485 IGFBP2 insulin-like growth factor binding protein 2, 36kDa
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
79875 THSD4 thrombospondin, type I, domain containing 4
10082 GPC6 glypican 6
2331 FMOD fibromodulin
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2
4256 MGP matrix Gla protein
23213 SULF1 sulfatase 1
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0044420: 18 genes, expected 1.28974, P=5.41324e-16, P adjusted = 6.30166e-11
1301 COL11A1 collagen, type XI, alpha 1
8076 MFAP5 microfibrillar associated protein 5
4811 NID1 nidogen 1
1284 COL4A2 collagen, type IV, alpha 2
1282 COL4A1 collagen, type IV, alpha 1
2200 FBN1 fibrillin 1
1306 COL15A1 collagen, type XV, alpha 1
4015 LOX lysyl oxidase
1278 COL1A2 collagen, type I, alpha 2
1289 COL5A1 collagen, type V, alpha 1
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1277 COL1A1 collagen, type I, alpha 1
3339 HSPG2 heparan sulfate proteoglycan 2
1281 COL3A1 collagen, type III, alpha 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2


MSCs batch 3 repressed and GO:0005201: 17 genes, expected 1.22976, P=4.22436e-15, P adjusted = 4.91766e-10
1301 COL11A1 collagen, type XI, alpha 1
8076 MFAP5 microfibrillar associated protein 5
1284 COL4A2 collagen, type IV, alpha 2
1282 COL4A1 collagen, type IV, alpha 1
2192 FBLN1 fibulin 1
2200 FBN1 fibrillin 1
1306 COL15A1 collagen, type XV, alpha 1
1278 COL1A2 collagen, type I, alpha 2
1289 COL5A1 collagen, type V, alpha 1
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1277 COL1A1 collagen, type I, alpha 1
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
1281 COL3A1 collagen, type III, alpha 1
1290 COL5A2 collagen, type V, alpha 2
4256 MGP matrix Gla protein


MSCs batch 3 repressed and GO:0048513: 59 genes, expected 19.2112, P=7.38183e-15, P adjusted = 8.59334e-10
6876 TAGLN transgelin
1301 COL11A1 collagen, type XI, alpha 1
2247 FGF2 fibroblast growth factor 2 (basic)
1948 EFNB2 ephrin-B2
1284 COL4A2 collagen, type IV, alpha 2
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
2200 FBN1 fibrillin 1
388 RHOB ras homolog gene family, member B
7538 ZFP36 zinc finger protein 36, C3H type, homolog (mouse)
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
2627 GATA6 GATA binding protein 6
7123 CLEC3B C-type lectin domain family 3, member B
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
4015 LOX lysyl oxidase
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
283078 MKX mohawk homeobox
10468 FST follistatin
7412 VCAM1 vascular cell adhesion molecule 1
284 ANGPT1 angiopoietin 1
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
1278 COL1A2 collagen, type I, alpha 2
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
9201 DCLK1 doublecortin-like kinase 1
1277 COL1A1 collagen, type I, alpha 1
4883 NPR3 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)
4232 MEST mesoderm specific transcript homolog (mouse)
6347 CCL2 chemokine (C-C motif) ligand 2
8613 PPAP2B phosphatidic acid phosphatase type 2B
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
7049 TGFBR3 transforming growth factor, beta receptor III
3861 KRT14 keratin 14
84623 KIRREL3 kin of IRRE like 3 (Drosophila)
6444 SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)
1281 COL3A1 collagen, type III, alpha 1
2273 FHL1 four and a half LIM domains 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
56956 LHX9 LIM homeobox 9
2619 GAS1 growth arrest-specific 1
1756 DMD dystrophin
1634 DCN decorin
83439 TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
1462 VCAN versican
130497 OSR1 odd-skipped related 1 (Drosophila)
7357 UGCG UDP-glucose ceramide glucosyltransferase
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
3575 IL7R interleukin 7 receptor
2131 EXT1 exostoses (multiple) 1
3381 IBSP integrin-binding sialoprotein
7046 TGFBR1 transforming growth factor, beta receptor 1
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2
4256 MGP matrix Gla protein
22801 ITGA11 integrin, alpha 11
1906 EDN1 endothelin 1
3885 KRT34 keratin 34


MSCs batch 3 repressed and GO:0048731: 67 genes, expected 25.7349, P=2.21107e-13, P adjusted = 2.57395e-08
6876 TAGLN transgelin
1301 COL11A1 collagen, type XI, alpha 1
2247 FGF2 fibroblast growth factor 2 (basic)
1948 EFNB2 ephrin-B2
11341 SCRG1 scrapie responsive protein 1
1284 COL4A2 collagen, type IV, alpha 2
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
2200 FBN1 fibrillin 1
388 RHOB ras homolog gene family, member B
7538 ZFP36 zinc finger protein 36, C3H type, homolog (mouse)
1306 COL15A1 collagen, type XV, alpha 1
2824 GPM6B glycoprotein M6B
652 BMP4 bone morphogenetic protein 4
2627 GATA6 GATA binding protein 6
7123 CLEC3B C-type lectin domain family 3, member B
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
4015 LOX lysyl oxidase
51232 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like)
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
283078 MKX mohawk homeobox
10468 FST follistatin
7412 VCAM1 vascular cell adhesion molecule 1
284 ANGPT1 angiopoietin 1
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
1278 COL1A2 collagen, type I, alpha 2
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
9201 DCLK1 doublecortin-like kinase 1
1277 COL1A1 collagen, type I, alpha 1
4883 NPR3 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)
4232 MEST mesoderm specific transcript homolog (mouse)
6347 CCL2 chemokine (C-C motif) ligand 2
8613 PPAP2B phosphatidic acid phosphatase type 2B
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
7049 TGFBR3 transforming growth factor, beta receptor III
3861 KRT14 keratin 14
84623 KIRREL3 kin of IRRE like 3 (Drosophila)
6444 SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)
1281 COL3A1 collagen, type III, alpha 1
2273 FHL1 four and a half LIM domains 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
56956 LHX9 LIM homeobox 9
4803 NGF nerve growth factor (beta polypeptide)
2619 GAS1 growth arrest-specific 1
9369 NRXN3 neurexin 3
1756 DMD dystrophin
1634 DCN decorin
83439 TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
288 ANK3 ankyrin 3, node of Ranvier (ankyrin G)
1462 VCAN versican
130497 OSR1 odd-skipped related 1 (Drosophila)
7357 UGCG UDP-glucose ceramide glucosyltransferase
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
3575 IL7R interleukin 7 receptor
2353 FOS v-fos FBJ murine osteosarcoma viral oncogene homolog
2131 EXT1 exostoses (multiple) 1
3381 IBSP integrin-binding sialoprotein
7046 TGFBR1 transforming growth factor, beta receptor 1
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2
4256 MGP matrix Gla protein
9915 ARNT2 aryl-hydrocarbon receptor nuclear translocator 2
22801 ITGA11 integrin, alpha 11
1906 EDN1 endothelin 1
3885 KRT34 keratin 34


MSCs batch 3 repressed and GO:0001871: 18 genes, expected 1.82964, P=3.27112e-13, P adjusted = 3.80798e-08
5197 PF4V1 platelet factor 4 variant 1
2247 FGF2 fibroblast growth factor 2 (basic)
7057 THBS1 thrombospondin 1
1490 CTGF connective tissue growth factor
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
7058 THBS2 thrombospondin 2
652 BMP4 bone morphogenetic protein 4
1289 COL5A1 collagen, type V, alpha 1
3929 LBP lipopolysaccharide binding protein
176 ACAN aggrecan
7049 TGFBR3 transforming growth factor, beta receptor III
5806 PTX3 pentraxin-related gene, rapidly induced by IL-1 beta
1462 VCAN versican
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
143903 LAYN layilin
2263 FGFR2 fibroblast growth factor receptor 2
3918 LAMC2 laminin, gamma 2


MSCs batch 3 repressed and GO:0030247: 17 genes, expected 1.60468, P=4.32034e-13, P adjusted = 5.02939e-08
5197 PF4V1 platelet factor 4 variant 1
2247 FGF2 fibroblast growth factor 2 (basic)
7057 THBS1 thrombospondin 1
1490 CTGF connective tissue growth factor
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
7058 THBS2 thrombospondin 2
652 BMP4 bone morphogenetic protein 4
1289 COL5A1 collagen, type V, alpha 1
176 ACAN aggrecan
7049 TGFBR3 transforming growth factor, beta receptor III
5806 PTX3 pentraxin-related gene, rapidly induced by IL-1 beta
1462 VCAN versican
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
143903 LAYN layilin
2263 FGFR2 fibroblast growth factor receptor 2
3918 LAMC2 laminin, gamma 2


MSCs batch 3 repressed and GO:0007155: 40 genes, expected 10.8129, P=9.4332e-13, P adjusted = 1.09814e-07
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
10418 SPON1 spondin 1, extracellular matrix protein
1301 COL11A1 collagen, type XI, alpha 1
4162 MCAM melanoma cell adhesion molecule
4811 NID1 nidogen 1
7057 THBS1 thrombospondin 1
58494 JAM2 junctional adhesion molecule 2
1490 CTGF connective tissue growth factor
388 RHOB ras homolog gene family, member B
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
1306 COL15A1 collagen, type XV, alpha 1
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
7058 THBS2 thrombospondin 2
8839 WISP2 WNT1 inducible signaling pathway protein 2
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
7412 VCAM1 vascular cell adhesion molecule 1
10516 FBLN5 fibulin 5
1289 COL5A1 collagen, type V, alpha 1
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
3339 HSPG2 heparan sulfate proteoglycan 2
81578 COL21A1 collagen, type XXI, alpha 1
9635 CLCA2 CLCA family member 2, chloride channel regulator
6347 CCL2 chemokine (C-C motif) ligand 2
7049 TGFBR3 transforming growth factor, beta receptor III
79987 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
1281 COL3A1 collagen, type III, alpha 1
5792 PTPRF protein tyrosine phosphatase, receptor type, F
9369 NRXN3 neurexin 3
1462 VCAN versican
57575 PCDH10 protocadherin 10
3696 ITGB8 integrin, beta 8
165 AEBP1 AE binding protein 1
3381 IBSP integrin-binding sialoprotein
3918 LAMC2 laminin, gamma 2
4256 MGP matrix Gla protein
22801 ITGA11 integrin, alpha 11
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9


MSCs batch 3 repressed and GO:0022610: 40 genes, expected 10.8129, P=9.4332e-13, P adjusted = 1.09814e-07
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
10418 SPON1 spondin 1, extracellular matrix protein
1301 COL11A1 collagen, type XI, alpha 1
4162 MCAM melanoma cell adhesion molecule
4811 NID1 nidogen 1
7057 THBS1 thrombospondin 1
58494 JAM2 junctional adhesion molecule 2
1490 CTGF connective tissue growth factor
388 RHOB ras homolog gene family, member B
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
1306 COL15A1 collagen, type XV, alpha 1
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
7058 THBS2 thrombospondin 2
8839 WISP2 WNT1 inducible signaling pathway protein 2
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
7412 VCAM1 vascular cell adhesion molecule 1
10516 FBLN5 fibulin 5
1289 COL5A1 collagen, type V, alpha 1
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
3339 HSPG2 heparan sulfate proteoglycan 2
81578 COL21A1 collagen, type XXI, alpha 1
9635 CLCA2 CLCA family member 2, chloride channel regulator
6347 CCL2 chemokine (C-C motif) ligand 2
7049 TGFBR3 transforming growth factor, beta receptor III
79987 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
1281 COL3A1 collagen, type III, alpha 1
5792 PTPRF protein tyrosine phosphatase, receptor type, F
9369 NRXN3 neurexin 3
1462 VCAN versican
57575 PCDH10 protocadherin 10
3696 ITGB8 integrin, beta 8
165 AEBP1 AE binding protein 1
3381 IBSP integrin-binding sialoprotein
3918 LAMC2 laminin, gamma 2
4256 MGP matrix Gla protein
22801 ITGA11 integrin, alpha 11
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9


MSCs batch 3 repressed and GO:0005581: 11 genes, expected 0.524896, P=2.18196e-12, P adjusted = 2.54006e-07
1301 COL11A1 collagen, type XI, alpha 1
1284 COL4A2 collagen, type IV, alpha 2
1282 COL4A1 collagen, type IV, alpha 1
1306 COL15A1 collagen, type XV, alpha 1
4015 LOX lysyl oxidase
1278 COL1A2 collagen, type I, alpha 2
1289 COL5A1 collagen, type V, alpha 1
1303 COL12A1 collagen, type XII, alpha 1
1277 COL1A1 collagen, type I, alpha 1
1281 COL3A1 collagen, type III, alpha 1
1290 COL5A2 collagen, type V, alpha 2


MSCs batch 3 repressed and GO:0005539: 16 genes, expected 1.54469, P=3.06246e-12, P adjusted = 3.56508e-07
5197 PF4V1 platelet factor 4 variant 1
2247 FGF2 fibroblast growth factor 2 (basic)
7057 THBS1 thrombospondin 1
1490 CTGF connective tissue growth factor
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
7058 THBS2 thrombospondin 2
652 BMP4 bone morphogenetic protein 4
1289 COL5A1 collagen, type V, alpha 1
176 ACAN aggrecan
7049 TGFBR3 transforming growth factor, beta receptor III
1462 VCAN versican
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
143903 LAYN layilin
2263 FGFR2 fibroblast growth factor receptor 2
3918 LAMC2 laminin, gamma 2


MSCs batch 3 repressed and GO:0005198: 34 genes, expected 9.71808, P=2.43099e-10, P adjusted = 2.82997e-05
1301 COL11A1 collagen, type XI, alpha 1
3884 KRT33B keratin 33B
8076 MFAP5 microfibrillar associated protein 5
7057 THBS1 thrombospondin 1
1284 COL4A2 collagen, type IV, alpha 2
1282 COL4A1 collagen, type IV, alpha 1
182 JAG1 jagged 1 (Alagille syndrome)
2192 FBLN1 fibulin 1
2200 FBN1 fibrillin 1
1306 COL15A1 collagen, type XV, alpha 1
7058 THBS2 thrombospondin 2
59 ACTA2 actin, alpha 2, smooth muscle, aorta
3883 KRT33A keratin 33A
4653 MYOC myocilin, trabecular meshwork inducible glucocorticoid response
1278 COL1A2 collagen, type I, alpha 2
1289 COL5A1 collagen, type V, alpha 1
2312 FLG filaggrin
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1277 COL1A1 collagen, type I, alpha 1
81578 COL21A1 collagen, type XXI, alpha 1
3875 KRT18 keratin 18
7168 TPM1 tropomyosin 1 (alpha)
3861 KRT14 keratin 14
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
1281 COL3A1 collagen, type III, alpha 1
3892 KRT86 keratin 86
3855 KRT7 keratin 7
1756 DMD dystrophin
1290 COL5A2 collagen, type V, alpha 2
4256 MGP matrix Gla protein
10398 MYL9 myosin, light chain 9, regulatory
3885 KRT34 keratin 34


MSCs batch 3 repressed and GO:0001501: 16 genes, expected 2.47451, P=4.02851e-09, P adjusted = 0.000468967
1301 COL11A1 collagen, type XI, alpha 1
1490 CTGF connective tissue growth factor
2200 FBN1 fibrillin 1
652 BMP4 bone morphogenetic protein 4
7123 CLEC3B C-type lectin domain family 3, member B
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
1278 COL1A2 collagen, type I, alpha 2
5549 PRELP proline/arginine-rich end leucine-rich repeat protein
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1277 COL1A1 collagen, type I, alpha 1
4883 NPR3 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)
2131 EXT1 exostoses (multiple) 1
7046 TGFBR1 transforming growth factor, beta receptor 1
4256 MGP matrix Gla protein
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0009888: 22 genes, expected 4.90403, P=5.1573e-09, P adjusted = 0.000600371
1301 COL11A1 collagen, type XI, alpha 1
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
652 BMP4 bone morphogenetic protein 4
10468 FST follistatin
176 ACAN aggrecan
1277 COL1A1 collagen, type I, alpha 1
4232 MEST mesoderm specific transcript homolog (mouse)
3861 KRT14 keratin 14
1281 COL3A1 collagen, type III, alpha 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
83439 TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
130497 OSR1 odd-skipped related 1 (Drosophila)
7357 UGCG UDP-glucose ceramide glucosyltransferase
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
2131 EXT1 exostoses (multiple) 1
3381 IBSP integrin-binding sialoprotein
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2
4256 MGP matrix Gla protein
1906 EDN1 endothelin 1
3885 KRT34 keratin 34


MSCs batch 3 repressed and GO:0030246: 20 genes, expected 4.15418, P=7.96566e-09, P adjusted = 0.000927298
5197 PF4V1 platelet factor 4 variant 1
2247 FGF2 fibroblast growth factor 2 (basic)
7057 THBS1 thrombospondin 1
1490 CTGF connective tissue growth factor
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
7058 THBS2 thrombospondin 2
652 BMP4 bone morphogenetic protein 4
7123 CLEC3B C-type lectin domain family 3, member B
5648 MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
1289 COL5A1 collagen, type V, alpha 1
176 ACAN aggrecan
7049 TGFBR3 transforming growth factor, beta receptor III
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
5806 PTX3 pentraxin-related gene, rapidly induced by IL-1 beta
1462 VCAN versican
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
143903 LAYN layilin
2263 FGFR2 fibroblast growth factor receptor 2
3918 LAMC2 laminin, gamma 2


MSCs batch 3 repressed and GO:0030198: 10 genes, expected 0.839834, P=9.60568e-09, P adjusted = 0.00111822
1301 COL11A1 collagen, type XI, alpha 1
1284 COL4A2 collagen, type IV, alpha 2
4015 LOX lysyl oxidase
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1281 COL3A1 collagen, type III, alpha 1
7046 TGFBR1 transforming growth factor, beta receptor 1
1290 COL5A2 collagen, type V, alpha 2


MSCs batch 3 repressed and GO:0030199: 7 genes, expected 0.299941, P=1.04421e-08, P adjusted = 0.00121559
1301 COL11A1 collagen, type XI, alpha 1
4015 LOX lysyl oxidase
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1281 COL3A1 collagen, type III, alpha 1
7046 TGFBR1 transforming growth factor, beta receptor 1
1290 COL5A2 collagen, type V, alpha 2


MSCs batch 3 repressed and GO:0008201: 11 genes, expected 1.21476, P=3.43722e-08, P adjusted = 0.00400134
5197 PF4V1 platelet factor 4 variant 1
2247 FGF2 fibroblast growth factor 2 (basic)
7057 THBS1 thrombospondin 1
1490 CTGF connective tissue growth factor
7058 THBS2 thrombospondin 2
652 BMP4 bone morphogenetic protein 4
1289 COL5A1 collagen, type V, alpha 1
7049 TGFBR3 transforming growth factor, beta receptor III
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
2263 FGFR2 fibroblast growth factor receptor 2
3918 LAMC2 laminin, gamma 2


MSCs batch 3 repressed and GO:0001944: 16 genes, expected 2.99941, P=6.25196e-08, P adjusted = 0.00727803
2247 FGF2 fibroblast growth factor 2 (basic)
1948 EFNB2 ephrin-B2
1284 COL4A2 collagen, type IV, alpha 2
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
388 RHOB ras homolog gene family, member B
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
4015 LOX lysyl oxidase
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
284 ANGPT1 angiopoietin 1
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
8613 PPAP2B phosphatidic acid phosphatase type 2B
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
7046 TGFBR1 transforming growth factor, beta receptor 1
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0005583: 5 genes, expected 0.134973, P=8.80496e-08, P adjusted = 0.01025
1301 COL11A1 collagen, type XI, alpha 1
1278 COL1A2 collagen, type I, alpha 2
1289 COL5A1 collagen, type V, alpha 1
1281 COL3A1 collagen, type III, alpha 1
1290 COL5A2 collagen, type V, alpha 2


MSCs batch 3 repressed and GO:0009611: 23 genes, expected 6.28376, P=1.00396e-07, P adjusted = 0.0116873
57088 PLSCR4 phospholipid scramblase 4
1490 CTGF connective tissue growth factor
2200 FBN1 fibrillin 1
7538 ZFP36 zinc finger protein 36, C3H type, homolog (mouse)
629 CFB complement factor B
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
2687 GGT5 gamma-glutamyltransferase 5
5648 MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
10516 FBLN5 fibulin 5
12 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
3929 LBP lipopolysaccharide binding protein
6347 CCL2 chemokine (C-C motif) ligand 2
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
5806 PTX3 pentraxin-related gene, rapidly induced by IL-1 beta
1281 COL3A1 collagen, type III, alpha 1
718 C3 complement component 3
716 C1S complement component 1, s subcomponent
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
2353 FOS v-fos FBJ murine osteosarcoma viral oncogene homolog
715 C1R complement component 1, r subcomponent
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0009605: 29 genes, expected 9.53811, P=1.17027e-07, P adjusted = 0.0136233
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
51554 CCRL1 chemokine (C-C motif) receptor-like 1
2247 FGF2 fibroblast growth factor 2 (basic)
57088 PLSCR4 phospholipid scramblase 4
1490 CTGF connective tissue growth factor
2200 FBN1 fibrillin 1
7538 ZFP36 zinc finger protein 36, C3H type, homolog (mouse)
629 CFB complement factor B
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
2687 GGT5 gamma-glutamyltransferase 5
5648 MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
10516 FBLN5 fibulin 5
12 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
3929 LBP lipopolysaccharide binding protein
6751 SSTR1 somatostatin receptor 1
5168 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2
6347 CCL2 chemokine (C-C motif) ligand 2
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
5806 PTX3 pentraxin-related gene, rapidly induced by IL-1 beta
1281 COL3A1 collagen, type III, alpha 1
718 C3 complement component 3
716 C1S complement component 1, s subcomponent
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
84557 MAP1LC3A microtubule-associated protein 1 light chain 3 alpha
2353 FOS v-fos FBJ murine osteosarcoma viral oncogene homolog
715 C1R complement component 1, r subcomponent
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0001568: 15 genes, expected 2.93942, P=2.89008e-07, P adjusted = 0.033644
2247 FGF2 fibroblast growth factor 2 (basic)
1284 COL4A2 collagen, type IV, alpha 2
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
388 RHOB ras homolog gene family, member B
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
4015 LOX lysyl oxidase
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
284 ANGPT1 angiopoietin 1
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
8613 PPAP2B phosphatidic acid phosphatase type 2B
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
7046 TGFBR1 transforming growth factor, beta receptor 1
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0005102: 31 genes, expected 11.2028, P=3.34319e-07, P adjusted = 0.0389187
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
5197 PF4V1 platelet factor 4 variant 1
4582 MUC1 mucin 1, cell surface associated
2247 FGF2 fibroblast growth factor 2 (basic)
1948 EFNB2 ephrin-B2
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
6281 S100A10 S100 calcium binding protein A10
652 BMP4 bone morphogenetic protein 4
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
7412 VCAM1 vascular cell adhesion molecule 1
284 ANGPT1 angiopoietin 1
10516 FBLN5 fibulin 5
55801 IL26 interleukin 26
3929 LBP lipopolysaccharide binding protein
10875 FGL2 fibrinogen-like 2
6347 CCL2 chemokine (C-C motif) ligand 2
7049 TGFBR3 transforming growth factor, beta receptor III
1281 COL3A1 collagen, type III, alpha 1
4856 NOV nephroblastoma overexpressed gene
4803 NGF nerve growth factor (beta polypeptide)
654466 KGFLP2 keratinocyte growth factor-like protein 2
718 C3 complement component 3
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
7046 TGFBR1 transforming growth factor, beta receptor 1
9915 ARNT2 aryl-hydrocarbon receptor nuclear translocator 2
1906 EDN1 endothelin 1
80310 PDGFD platelet derived growth factor D


MSCs batch 3 repressed and GO:0043062: 11 genes, expected 1.5297, P=3.82117e-07, P adjusted = 0.044483
1301 COL11A1 collagen, type XI, alpha 1
1284 COL4A2 collagen, type IV, alpha 2
4015 LOX lysyl oxidase
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
176 ACAN aggrecan
1303 COL12A1 collagen, type XII, alpha 1
1281 COL3A1 collagen, type III, alpha 1
288 ANK3 ankyrin 3, node of Ranvier (ankyrin G)
7046 TGFBR1 transforming growth factor, beta receptor 1
1290 COL5A2 collagen, type V, alpha 2


MSCs batch 3 repressed and GO:0007160: 10 genes, expected 1.28974, P=6.42512e-07, P adjusted = 0.0747961
4811 NID1 nidogen 1
1490 CTGF connective tissue growth factor
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
10516 FBLN5 fibulin 5
1281 COL3A1 collagen, type III, alpha 1
3696 ITGB8 integrin, beta 8
22801 ITGA11 integrin, alpha 11


MSCs batch 3 repressed and GO:0007166: 46 genes, expected 21.3558, P=6.64912e-07, P adjusted = 0.0774038
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
51554 CCRL1 chemokine (C-C motif) receptor-like 1
5021 OXTR oxytocin receptor
2247 FGF2 fibroblast growth factor 2 (basic)
182 JAG1 jagged 1 (Alagille syndrome)
4919 ROR1 receptor tyrosine kinase-like orphan receptor 1
1490 CTGF connective tissue growth factor
652 BMP4 bone morphogenetic protein 4
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
4015 LOX lysyl oxidase
6424 SFRP4 secreted frizzled-related protein 4
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
10468 FST follistatin
1278 COL1A2 collagen, type I, alpha 2
3929 LBP lipopolysaccharide binding protein
9315 C5orf13 chromosome 5 open reading frame 13
1439 CSF2RB colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
64750 SMURF2 SMAD specific E3 ubiquitin protein ligase 2
6751 SSTR1 somatostatin receptor 1
150 ADRA2A adrenergic, alpha-2A-, receptor
3875 KRT18 keratin 18
8532 CPZ carboxypeptidase Z
80332 ADAM33 ADAM metallopeptidase domain 33
5168 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2
6347 CCL2 chemokine (C-C motif) ligand 2
8613 PPAP2B phosphatidic acid phosphatase type 2B
7049 TGFBR3 transforming growth factor, beta receptor III
9590 AKAP12 A kinase (PRKA) anchor protein 12
1281 COL3A1 collagen, type III, alpha 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
5792 PTPRF protein tyrosine phosphatase, receptor type, F
4803 NGF nerve growth factor (beta polypeptide)
83439 TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box)
196883 ADCY4 adenylate cyclase 4
718 C3 complement component 3
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
9052 GPRC5A G protein-coupled receptor, family C, group 5, member A
2263 FGFR2 fibroblast growth factor receptor 2
3575 IL7R interleukin 7 receptor
3696 ITGB8 integrin, beta 8
7046 TGFBR1 transforming growth factor, beta receptor 1
2331 FMOD fibromodulin
10149 GPR64 G protein-coupled receptor 64
22801 ITGA11 integrin, alpha 11
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0004867: 10 genes, expected 1.31974, P=7.97685e-07, P adjusted = 0.0928602
51232 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like)
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
6318 SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
12 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
8710 SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
6317 SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3
5272 SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9
6590 SLPI secretory leukocyte peptidase inhibitor


MSCs batch 3 repressed and GO:0007167: 19 genes, expected 5.039, P=8.56711e-07, P adjusted = 0.0997315
2247 FGF2 fibroblast growth factor 2 (basic)
4919 ROR1 receptor tyrosine kinase-like orphan receptor 1
1490 CTGF connective tissue growth factor
652 BMP4 bone morphogenetic protein 4
4015 LOX lysyl oxidase
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
10468 FST follistatin
1278 COL1A2 collagen, type I, alpha 2
9315 C5orf13 chromosome 5 open reading frame 13
64750 SMURF2 SMAD specific E3 ubiquitin protein ligase 2
7049 TGFBR3 transforming growth factor, beta receptor III
1281 COL3A1 collagen, type III, alpha 1
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
5792 PTPRF protein tyrosine phosphatase, receptor type, F
4803 NGF nerve growth factor (beta polypeptide)
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
2263 FGFR2 fibroblast growth factor receptor 2
7046 TGFBR1 transforming growth factor, beta receptor 1
2331 FMOD fibromodulin


MSCs batch 3 repressed and GO:0005604: 8 genes, expected 0.779846, P=9.90032e-07, P adjusted = 0.115252
4811 NID1 nidogen 1
1284 COL4A2 collagen, type IV, alpha 2
1282 COL4A1 collagen, type IV, alpha 1
2200 FBN1 fibrillin 1
176 ACAN aggrecan
3339 HSPG2 heparan sulfate proteoglycan 2
6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
3918 LAMC2 laminin, gamma 2


MSCs batch 3 repressed and GO:0031589: 10 genes, expected 1.36473, P=1.09171e-06, P adjusted = 0.127088
4811 NID1 nidogen 1
1490 CTGF connective tissue growth factor
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
10516 FBLN5 fibulin 5
1281 COL3A1 collagen, type III, alpha 1
3696 ITGB8 integrin, beta 8
22801 ITGA11 integrin, alpha 11


MSCs batch 3 repressed and GO:0004866: 12 genes, expected 2.06959, P=1.17812e-06, P adjusted = 0.137148
7057 THBS1 thrombospondin 1
51232 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like)
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
6318 SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
12 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
8710 SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
718 C3 complement component 3
6317 SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3
5272 SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9
6590 SLPI secretory leukocyte peptidase inhibitor


MSCs batch 3 repressed and GO:0030414: 12 genes, expected 2.12958, P=1.59648e-06, P adjusted = 0.185849
7057 THBS1 thrombospondin 1
51232 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like)
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
6318 SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
12 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
8710 SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
718 C3 complement component 3
6317 SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3
5272 SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9
6590 SLPI secretory leukocyte peptidase inhibitor


MSCs batch 3 repressed and GO:0009887: 21 genes, expected 6.52371, P=2.87387e-06, P adjusted = 0.334553
2247 FGF2 fibroblast growth factor 2 (basic)
1948 EFNB2 ephrin-B2
1284 COL4A2 collagen, type IV, alpha 2
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
388 RHOB ras homolog gene family, member B
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
2627 GATA6 GATA binding protein 6
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
10468 FST follistatin
284 ANGPT1 angiopoietin 1
6347 CCL2 chemokine (C-C motif) ligand 2
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
7049 TGFBR3 transforming growth factor, beta receptor III
2273 FHL1 four and a half LIM domains 1
2619 GAS1 growth arrest-specific 1
1634 DCN decorin
7046 TGFBR1 transforming growth factor, beta receptor 1
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0019838: 9 genes, expected 1.24475, P=4.23805e-06, P adjusted = 0.49336
1490 CTGF connective tissue growth factor
8839 WISP2 WNT1 inducible signaling pathway protein 2
51232 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like)
1439 CSF2RB colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)
7049 TGFBR3 transforming growth factor, beta receptor III
4856 NOV nephroblastoma overexpressed gene
3485 IGFBP2 insulin-like growth factor binding protein 2, 36kDa
3575 IL7R interleukin 7 receptor
7046 TGFBR1 transforming growth factor, beta receptor 1


MSCs batch 3 repressed and GO:0004857: 15 genes, expected 3.68927, P=5.00303e-06, P adjusted = 0.582413
7057 THBS1 thrombospondin 1
5570 PKIB protein kinase (cAMP-dependent, catalytic) inhibitor beta
51232 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like)
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
6318 SERPINB4 serpin peptidase inhibitor, clade B (ovalbumin), member 4
8434 RECK reversion-inducing-cysteine-rich protein with kazal motifs
12 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
8710 SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
80183 C13orf18 chromosome 13 open reading frame 18
718 C3 complement component 3
9749 PHACTR2 phosphatase and actin regulator 2
6317 SERPINB3 serpin peptidase inhibitor, clade B (ovalbumin), member 3
5272 SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9
6590 SLPI secretory leukocyte peptidase inhibitor


MSCs batch 3 repressed and GO:0005540: 5 genes, expected 0.269947, P=5.35806e-06, P adjusted = 0.623743
1404 HAPLN1 hyaluronan and proteoglycan link protein 1
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
176 ACAN aggrecan
1462 VCAN versican
143903 LAYN layilin


MSCs batch 3 repressed and GO:0008544: 11 genes, expected 2.09958, P=8.78675e-06, P adjusted = 1
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
10468 FST follistatin
1277 COL1A1 collagen, type I, alpha 1
3861 KRT14 keratin 14
1281 COL3A1 collagen, type III, alpha 1
7357 UGCG UDP-glucose ceramide glucosyltransferase
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2
3885 KRT34 keratin 34


MSCs batch 3 repressed and GO:0005615: 21 genes, expected 7.0636, P=9.75746e-06, P adjusted = 1
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
2247 FGF2 fibroblast growth factor 2 (basic)
11341 SCRG1 scrapie responsive protein 1
2192 FBLN1 fibulin 1
2200 FBN1 fibrillin 1
652 BMP4 bone morphogenetic protein 4
6424 SFRP4 secreted frizzled-related protein 4
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
7412 VCAM1 vascular cell adhesion molecule 1
4653 MYOC myocilin, trabecular meshwork inducible glucocorticoid response
55801 IL26 interleukin 26
3929 LBP lipopolysaccharide binding protein
10875 FGL2 fibrinogen-like 2
6347 CCL2 chemokine (C-C motif) ligand 2
7049 TGFBR3 transforming growth factor, beta receptor III
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
1281 COL3A1 collagen, type III, alpha 1
3485 IGFBP2 insulin-like growth factor binding protein 2, 36kDa
6372 CXCL6 chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
23213 SULF1 sulfatase 1
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0048514: 12 genes, expected 2.57949, P=1.16353e-05, P adjusted = 1
2247 FGF2 fibroblast growth factor 2 (basic)
1284 COL4A2 collagen, type IV, alpha 2
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
388 RHOB ras homolog gene family, member B
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
284 ANGPT1 angiopoietin 1
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
7046 TGFBR1 transforming growth factor, beta receptor 1
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0001502: 4 genes, expected 0.164967, P=1.50615e-05, P adjusted = 1
1301 COL11A1 collagen, type XI, alpha 1
1490 CTGF connective tissue growth factor
176 ACAN aggrecan
4256 MGP matrix Gla protein


MSCs batch 3 repressed and GO:0007398: 11 genes, expected 2.24955, P=1.69008e-05, P adjusted = 1
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
10468 FST follistatin
1277 COL1A1 collagen, type I, alpha 1
3861 KRT14 keratin 14
1281 COL3A1 collagen, type III, alpha 1
7357 UGCG UDP-glucose ceramide glucosyltransferase
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
3918 LAMC2 laminin, gamma 2
1290 COL5A2 collagen, type V, alpha 2
3885 KRT34 keratin 34


MSCs batch 3 repressed and GO:0007229: 7 genes, expected 0.839834, P=1.96778e-05, P adjusted = 1
1490 CTGF connective tissue growth factor
9358 ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains)
80332 ADAM33 ADAM metallopeptidase domain 33
1281 COL3A1 collagen, type III, alpha 1
3696 ITGB8 integrin, beta 8
22801 ITGA11 integrin, alpha 11
4739 NEDD9 neural precursor cell expressed, developmentally down-regulated 9


MSCs batch 3 repressed and GO:0051216: 6 genes, expected 0.599881, P=2.7058e-05, P adjusted = 1
1301 COL11A1 collagen, type XI, alpha 1
1490 CTGF connective tissue growth factor
652 BMP4 bone morphogenetic protein 4
176 ACAN aggrecan
4256 MGP matrix Gla protein
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0005520: 5 genes, expected 0.374926, P=3.04828e-05, P adjusted = 1
1490 CTGF connective tissue growth factor
8839 WISP2 WNT1 inducible signaling pathway protein 2
51232 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like)
4856 NOV nephroblastoma overexpressed gene
3485 IGFBP2 insulin-like growth factor binding protein 2, 36kDa


MSCs batch 3 repressed and GO:0006928: 18 genes, expected 6.16378, P=5.34203e-05, P adjusted = 1
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
7412 VCAM1 vascular cell adhesion molecule 1
9201 DCLK1 doublecortin-like kinase 1
150 ADRA2A adrenergic, alpha-2A-, receptor
5168 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2
6347 CCL2 chemokine (C-C motif) ligand 2
7168 TPM1 tropomyosin 1 (alpha)
8613 PPAP2B phosphatidic acid phosphatase type 2B
7049 TGFBR3 transforming growth factor, beta receptor III
9369 NRXN3 neurexin 3
288 ANK3 ankyrin 3, node of Ranvier (ankyrin G)
800 CALD1 caldesmon 1
7046 TGFBR1 transforming growth factor, beta receptor 1
22801 ITGA11 integrin, alpha 11
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0051674: 18 genes, expected 6.16378, P=5.34203e-05, P adjusted = 1
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
10894 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1
183 AGT angiotensinogen (serpin peptidase inhibitor, clade A, member 8)
7412 VCAM1 vascular cell adhesion molecule 1
9201 DCLK1 doublecortin-like kinase 1
150 ADRA2A adrenergic, alpha-2A-, receptor
5168 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2
6347 CCL2 chemokine (C-C motif) ligand 2
7168 TPM1 tropomyosin 1 (alpha)
8613 PPAP2B phosphatidic acid phosphatase type 2B
7049 TGFBR3 transforming growth factor, beta receptor III
9369 NRXN3 neurexin 3
288 ANK3 ankyrin 3, node of Ranvier (ankyrin G)
800 CALD1 caldesmon 1
7046 TGFBR1 transforming growth factor, beta receptor 1
22801 ITGA11 integrin, alpha 11
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0001525: 10 genes, expected 2.12958, P=5.76531e-05, P adjusted = 1
2247 FGF2 fibroblast growth factor 2 (basic)
1284 COL4A2 collagen, type IV, alpha 2
182 JAG1 jagged 1 (Alagille syndrome)
1490 CTGF connective tissue growth factor
388 RHOB ras homolog gene family, member B
1306 COL15A1 collagen, type XV, alpha 1
652 BMP4 bone morphogenetic protein 4
284 ANGPT1 angiopoietin 1
5054 SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
1906 EDN1 endothelin 1


MSCs batch 3 repressed and GO:0006959: 7 genes, expected 1.0048, P=6.41091e-05, P adjusted = 1
629 CFB complement factor B
5648 MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
6347 CCL2 chemokine (C-C motif) ligand 2
718 C3 complement component 3
716 C1S complement component 1, s subcomponent
715 C1R complement component 1, r subcomponent
683 BST1 bone marrow stromal cell antigen 1


MSCs batch 3 repressed and GO:0002526: 7 genes, expected 1.04979, P=8.50514e-05, P adjusted = 1
629 CFB complement factor B
5648 MASP1 mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
12 SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
3929 LBP lipopolysaccharide binding protein
718 C3 complement component 3
716 C1S complement component 1, s subcomponent
715 C1R complement component 1, r subcomponent


MSCs batch 3 induced and GO:0006950: 50 genes, expected 26.0057, P=7.02667e-06, P adjusted = 0.817988
26353 HSPB8 heat shock 22kDa protein 8
650 BMP2 bone morphogenetic protein 2
3162 HMOX1 heme oxygenase (decycling) 1
10344 CCL26 chemokine (C-C motif) ligand 26
3303 HSPA1A heat shock 70kDa protein 1A
8942 KYNU kynureninase (L-kynurenine hydrolase)
5328 PLAU plasminogen activator, urokinase
7056 THBD thrombomodulin
64764 CREB3L2 cAMP responsive element binding protein 3-like 2
3576 IL8 interleukin 8
54962 TIPIN TIMELESS interacting protein
3553 IL1B interleukin 1, beta
9616 RNF7 ring finger protein 7
10808 HSPH1 heat shock 105kDa/110kDa protein 1
3310 HSPA6 heat shock 70kDa protein 6 (HSP70B')
133396 IL31RA interleukin 31 receptor A
3301 DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1
140809 SRXN1 sulfiredoxin 1 homolog (S. cerevisiae)
2167 FABP4 fatty acid binding protein 4, adipocyte
6421 SFPQ splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated)
7980 TFPI2 tissue factor pathway inhibitor 2
10912 GADD45G growth arrest and DNA-damage-inducible, gamma
9448 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
81035 COLEC12 collectin sub-family member 12
3320 HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
2878 GPX3 glutathione peroxidase 3 (plasma)
1839 HBEGF heparin-binding EGF-like growth factor
5743 PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
84525 HOPX HOP homeobox
23645 PPP1R15A protein phosphatase 1, regulatory (inhibitor) subunit 15A
3656 IRAK2 interleukin-1 receptor-associated kinase 2
1728 NQO1 NAD(P)H dehydrogenase, quinone 1
8893 EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa
3589 IL11 interleukin 11
4864 NPC1 Niemann-Pick disease, type C1
2069 EREG epiregulin
10963 STIP1 stress-induced-phosphoprotein 1
1909 EDNRA endothelin receptor type A
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
3673 ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)
1649 DDIT3 DNA-damage-inducible transcript 3
3783 KCNN4 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
9577 BRE brain and reproductive organ-expressed (TNFRSF1A modulator)
133746 JMY junction-mediating and regulatory protein
8111 GPR68 G protein-coupled receptor 68
3337 DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1
3106 HLA-B major histocompatibility complex, class I, B
11057 ABHD2 abhydrolase domain containing 2
22824 HSPA4L heat shock 70kDa protein 4-like


MSCs batch 3 induced and GO:0006986: 8 genes, expected 1.12255, P=1.46978e-05, P adjusted = 1
64764 CREB3L2 cAMP responsive element binding protein 3-like 2
10808 HSPH1 heat shock 105kDa/110kDa protein 1
3310 HSPA6 heat shock 70kDa protein 6 (HSP70B')
3301 DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1
3320 HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
1649 DDIT3 DNA-damage-inducible transcript 3
3337 DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1
22824 HSPA4L heat shock 70kDa protein 4-like


MSCs batch 3 induced and GO:0051789: 8 genes, expected 1.12255, P=1.46978e-05, P adjusted = 1
64764 CREB3L2 cAMP responsive element binding protein 3-like 2
10808 HSPH1 heat shock 105kDa/110kDa protein 1
3310 HSPA6 heat shock 70kDa protein 6 (HSP70B')
3301 DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1
3320 HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
1649 DDIT3 DNA-damage-inducible transcript 3
3337 DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1
22824 HSPA4L heat shock 70kDa protein 4-like


MSCs batch 3 induced and GO:0042221: 27 genes, expected 11.9947, P=8.24229e-05, P adjusted = 1
3162 HMOX1 heme oxygenase (decycling) 1
10344 CCL26 chemokine (C-C motif) ligand 26
8942 KYNU kynureninase (L-kynurenine hydrolase)
5328 PLAU plasminogen activator, urokinase
64764 CREB3L2 cAMP responsive element binding protein 3-like 2
3576 IL8 interleukin 8
3553 IL1B interleukin 1, beta
9616 RNF7 ring finger protein 7
10808 HSPH1 heat shock 105kDa/110kDa protein 1
3310 HSPA6 heat shock 70kDa protein 6 (HSP70B')
3301 DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1
140809 SRXN1 sulfiredoxin 1 homolog (S. cerevisiae)
81035 COLEC12 collectin sub-family member 12
3320 HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1
2878 GPX3 glutathione peroxidase 3 (plasma)
10202 DHRS2 dehydrogenase/reductase (SDR family) member 2
5743 PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
4501 MT1X metallothionein 1X
5573 PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)
1728 NQO1 NAD(P)H dehydrogenase, quinone 1
2357 FPR1 formyl peptide receptor 1
8893 EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa
1645 AKR1C1 aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)
1649 DDIT3 DNA-damage-inducible transcript 3
5898 RALA v-ral simian leukemia viral oncogene homolog A (ras related)
3337 DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1
22824 HSPA4L heat shock 70kDa protein 4-like


MSCs batch 3 induced and GO:0048731: 59 genes, expected 35.6721, P=8.66654e-05, P adjusted = 1
650 BMP2 bone morphogenetic protein 2
56172 ANKH ankylosis, progressive homolog (mouse)
3162 HMOX1 heme oxygenase (decycling) 1
3400 ID4 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein
92737 DNER delta/notch-like EGF repeat containing
64399 HHIP hedgehog interacting protein
3909 LAMA3 laminin, alpha 3
29116 MYLIP myosin regulatory light chain interacting protein
23210 JMJD6 jumonji domain containing 6
4929 NR4A2 nuclear receptor subfamily 4, group A, member 2
10763 NES nestin
3576 IL8 interleukin 8
50861 STMN3 stathmin-like 3
25937 WWTR1 WW domain containing transcription regulator 1
6926 TBX3 T-box 3
133396 IL31RA interleukin 31 receptor A
1382 CRABP2 cellular retinoic acid binding protein 2
83478 ARHGAP24 Rho GTPase activating protein 24
4884 NPTX1 neuronal pentraxin I
8877 SPHK1 sphingosine kinase 1
23184 MESDC2 mesoderm development candidate 2
9118 INA internexin neuronal intermediate filament protein, alpha
4860 NP nucleoside phosphorylase
30812 SOX8 SRY (sex determining region Y)-box 8
10202 DHRS2 dehydrogenase/reductase (SDR family) member 2
1839 HBEGF heparin-binding EGF-like growth factor
94234 FOXQ1 forkhead box Q1
55859 BEX1 brain expressed, X-linked 1
6526 SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3
5228 PGF placental growth factor
4207 MEF2B myocyte enhancer factor 2B
5743 PTGS2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
84525 HOPX HOP homeobox
10439 OLFM1 olfactomedin 1
2294 FOXF1 forkhead box F1
1427 CRYGS crystallin, gamma S
5573 PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
3475 IFRD1 interferon-related developmental regulator 1
6809 STX3 syntaxin 3
10018 BCL2L11 BCL2-like 11 (apoptosis facilitator)
56243 KIAA1217 KIAA1217
8893 EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa
10019 SH2B3 SH2B adaptor protein 3
23237 ARC activity-regulated cytoskeleton-associated protein
23462 HEY1 hairy/enhancer-of-split related with YRPW motif 1
3589 IL11 interleukin 11
2069 EREG epiregulin
3910 LAMA4 laminin, alpha 4
3976 LIF leukemia inhibitory factor (cholinergic differentiation factor)
1305 COL13A1 collagen, type XIII, alpha 1
6696 SPP1 secreted phosphoprotein 1
1909 EDNRA endothelin receptor type A
3673 ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)
2047 EPHB1 EPH receptor B1
4693 NDP Norrie disease (pseudoglioma)
10253 SPRY2 sprouty homolog 2 (Drosophila)
3897 L1CAM L1 cell adhesion molecule
1746 DLX2 distal-less homeobox 2


MSCs batch 3 induced and GO:0042060: 11 genes, expected 2.70244, P=8.71762e-05, P adjusted = 1
3162 HMOX1 heme oxygenase (decycling) 1
5328 PLAU plasminogen activator, urokinase
7056 THBD thrombomodulin
7980 TFPI2 tissue factor pathway inhibitor 2
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
1839 HBEGF heparin-binding EGF-like growth factor
84525 HOPX HOP homeobox
3589 IL11 interleukin 11
2069 EREG epiregulin
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
3673 ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)


MSCs batch 4 repressed and GO:0007565: 6 genes, expected 0.330529, P=9.63851e-07, P adjusted = 0.112204
5676 PSG7 pregnancy specific beta-1-glycoprotein 7
5021 OXTR oxytocin receptor
5673 PSG5 pregnancy specific beta-1-glycoprotein 5
5678 PSG9 pregnancy specific beta-1-glycoprotein 9
5675 PSG6 pregnancy specific beta-1-glycoprotein 6
5672 PSG4 pregnancy specific beta-1-glycoprotein 4


MSCs batch 4 repressed and GO:0005576: 23 genes, expected 9.14987, P=2.94286e-05, P adjusted = 1
4057 LTF lactotransferrin
79875 THSD4 thrombospondin, type I, domain containing 4
1301 COL11A1 collagen, type XI, alpha 1
5676 PSG7 pregnancy specific beta-1-glycoprotein 7
3953 LEPR leptin receptor
8076 MFAP5 microfibrillar associated protein 5
5673 PSG5 pregnancy specific beta-1-glycoprotein 5
84171 LOXL4 lysyl oxidase-like 4
8492 PRSS12 protease, serine, 12 (neurotrypsin, motopsin)
222663 SCUBE3 signal peptide, CUB domain, EGF-like 3
2252 FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
5678 PSG9 pregnancy specific beta-1-glycoprotein 9
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
129804 FBLN7 fibulin 7
5649 RELN reelin
3488 IGFBP5 insulin-like growth factor binding protein 5
5675 PSG6 pregnancy specific beta-1-glycoprotein 6
5672 PSG4 pregnancy specific beta-1-glycoprotein 4
3484 IGFBP1 insulin-like growth factor binding protein 1
1303 COL12A1 collagen, type XII, alpha 1
3553 IL1B interleukin 1, beta
147372 CCBE1 collagen and calcium binding EGF domains 1
84623 KIRREL3 kin of IRRE like 3 (Drosophila)


MSCs batch 4 induced and GO:0005576: 71 genes, expected 22.2704, P=3.9445e-19, P adjusted = 4.59187e-14
8840 WISP1 WNT1 inducible signaling pathway protein 1
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
80144 FRAS1 Fraser syndrome 1
9241 NOG noggin
55118 CRTAC1 cartilage acidic protein 1
5730 PTGDS prostaglandin D2 synthase 21kDa (brain)
4147 MATN2 matrilin 2
11341 SCRG1 scrapie responsive protein 1
5122 PCSK1 proprotein convertase subtilisin/kexin type 1
2201 FBN2 fibrillin 2
5655 KLK10 kallikrein-related peptidase 10
3383 ICAM1 intercellular adhesion molecule 1
7425 VGF VGF nerve growth factor inducible
1191 CLU clusterin
652 BMP4 bone morphogenetic protein 4
157869 RPESP RPE-spondin
2487 FRZB frizzled-related protein
3671 ISLR immunoglobulin superfamily containing leucine-rich repeat
64399 HHIP hedgehog interacting protein
50509 COL5A3 collagen, type V, alpha 3
2 A2M alpha-2-macroglobulin
8788 DLK1 delta-like 1 homolog (Drosophila)
22854 NTNG1 netrin G1
64856 VWA1 von Willebrand factor A domain containing 1
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
55801 IL26 interleukin 26
55959 SULF2 sulfatase 2
89932 PAPLN papilin, proteoglycan-like sulfated glycoprotein
256691 MAMDC2 MAM domain containing 2
9244 CRLF1 cytokine receptor-like factor 1
348 APOE apolipoprotein E
5157 PDGFRL platelet-derived growth factor receptor-like
3589 IL11 interleukin 11
1299 COL9A3 collagen, type IX, alpha 3
10417 SPON2 spondin 2, extracellular matrix protein
8532 CPZ carboxypeptidase Z
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
1469 CST1 cystatin SN
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
1314 COPA coatomer protein complex, subunit alpha
4879 NPPB natriuretic peptide precursor B
3977 LIFR leukemia inhibitory factor receptor alpha
54360 CYTL1 cytokine-like 1
23671 TMEFF2 transmembrane protein with EGF-like and two follistatin-like domains 2
28514 DLL1 delta-like 1 (Drosophila)
9547 CXCL14 chemokine (C-X-C motif) ligand 14
374946 C1orf187 chromosome 1 open reading frame 187
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
3911 LAMA5 laminin, alpha 5
4885 NPTX2 neuronal pentraxin II
718 C3 complement component 3
58189 WFDC1 WAP four-disulfide core domain 1
50964 SOST sclerosteosis
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
2263 FGFR2 fibroblast growth factor receptor 2
84966 IGSF21 immunoglobin superfamily, member 21
1081 CGA glycoprotein hormones, alpha polypeptide
2690 GHR growth hormone receptor
90139 TSPAN18 tetraspanin 18
57124 CD248 CD248 molecule, endosialin
11009 IL24 interleukin 24
3955 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
1525 CXADR coxsackie virus and adenovirus receptor
9388 LIPG lipase, endothelial
1277 COL1A1 collagen, type I, alpha 1
1311 COMP cartilage oligomeric matrix protein
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
3730 KAL1 Kallmann syndrome 1 sequence
2042 EPHA3 EPH receptor A3
80310 PDGFD platelet derived growth factor D


MSCs batch 4 induced and GO:0044421: 42 genes, expected 9.43684, P=3.40484e-16, P adjusted = 3.96364e-11
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
80144 FRAS1 Fraser syndrome 1
9241 NOG noggin
4147 MATN2 matrilin 2
11341 SCRG1 scrapie responsive protein 1
5122 PCSK1 proprotein convertase subtilisin/kexin type 1
2201 FBN2 fibrillin 2
3383 ICAM1 intercellular adhesion molecule 1
7425 VGF VGF nerve growth factor inducible
1191 CLU clusterin
652 BMP4 bone morphogenetic protein 4
50509 COL5A3 collagen, type V, alpha 3
8788 DLK1 delta-like 1 homolog (Drosophila)
22854 NTNG1 netrin G1
64856 VWA1 von Willebrand factor A domain containing 1
55801 IL26 interleukin 26
55959 SULF2 sulfatase 2
89932 PAPLN papilin, proteoglycan-like sulfated glycoprotein
9244 CRLF1 cytokine receptor-like factor 1
348 APOE apolipoprotein E
3589 IL11 interleukin 11
1299 COL9A3 collagen, type IX, alpha 3
10417 SPON2 spondin 2, extracellular matrix protein
8532 CPZ carboxypeptidase Z
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
1314 COPA coatomer protein complex, subunit alpha
4879 NPPB natriuretic peptide precursor B
54360 CYTL1 cytokine-like 1
9547 CXCL14 chemokine (C-X-C motif) ligand 14
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
3911 LAMA5 laminin, alpha 5
58189 WFDC1 WAP four-disulfide core domain 1
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
90139 TSPAN18 tetraspanin 18
57124 CD248 CD248 molecule, endosialin
11009 IL24 interleukin 24
1277 COL1A1 collagen, type I, alpha 1
1311 COMP cartilage oligomeric matrix protein
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0048731: 61 genes, expected 21.9129, P=1.16613e-13, P adjusted = 1.35752e-08
84525 HOPX HOP homeobox
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
10439 OLFM1 olfactomedin 1
9241 NOG noggin
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
11341 SCRG1 scrapie responsive protein 1
1397 CRIP2 cysteine-rich protein 2
26508 HEYL hairy/enhancer-of-split related with YRPW motif-like
7425 VGF VGF nerve growth factor inducible
2824 GPM6B glycoprotein M6B
652 BMP4 bone morphogenetic protein 4
6599 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
92737 DNER delta/notch-like EGF repeat containing
4761 NEUROD2 neurogenic differentiation 2
2487 FRZB frizzled-related protein
7852 CXCR4 chemokine (C-X-C motif) receptor 4
64399 HHIP hedgehog interacting protein
50509 COL5A3 collagen, type V, alpha 3
22854 NTNG1 netrin G1
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
10763 NES nestin
348 APOE apolipoprotein E
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3589 IL11 interleukin 11
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
9355 LHX2 LIM homeobox 2
596 BCL2 B-cell CLL/lymphoma 2
6347 CCL2 chemokine (C-C motif) ligand 2
6840 SVIL supervillin
2069 EREG epiregulin
5076 PAX2 paired box 2
1382 CRABP2 cellular retinoic acid binding protein 2
4879 NPPB natriuretic peptide precursor B
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
54360 CYTL1 cytokine-like 1
5493 PPL periplakin
28514 DLL1 delta-like 1 (Drosophila)
7098 TLR3 toll-like receptor 3
3911 LAMA5 laminin, alpha 5
6664 SOX11 SRY (sex determining region Y)-box 11
6591 SNAI2 snail homolog 2 (Drosophila)
2047 EPHB1 EPH receptor B1
50964 SOST sclerosteosis
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
30812 SOX8 SRY (sex determining region Y)-box 8
2690 GHR growth hormone receptor
3955 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
3800 KIF5C kinesin family member 5C
1277 COL1A1 collagen, type I, alpha 1
1311 COMP cartilage oligomeric matrix protein
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence
3897 L1CAM L1 cell adhesion molecule
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
4744 NEFH neurofilament, heavy polypeptide
1400 CRMP1 collapsin response mediator protein 1


MSCs batch 4 induced and GO:0031226: 47 genes, expected 14.6469, P=1.00692e-12, P adjusted = 1.17217e-07
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
9289 GPR56 G protein-coupled receptor 56
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
6326 SCN2A sodium channel, voltage-gated, type II, alpha subunit
3655 ITGA6 integrin, alpha 6
3383 ICAM1 intercellular adhesion molecule 1
2043 EPHA4 EPH receptor A4
7852 CXCR4 chemokine (C-X-C motif) receptor 4
6533 SLC6A6 solute carrier family 6 (neurotransmitter transporter, taurine), member 6
64399 HHIP hedgehog interacting protein
6330 SCN4B sodium channel, voltage-gated, type IV, beta
22854 NTNG1 netrin G1
358 AQP1 aquaporin 1 (Colton blood group)
6572 SLC18A3 solute carrier family 18 (vesicular acetylcholine), member 3
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3759 KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2
2069 EREG epiregulin
3752 KCND3 potassium voltage-gated channel, Shal-related subfamily, member 3
3977 LIFR leukemia inhibitory factor receptor alpha
2261 FGFR3 fibroblast growth factor receptor 3
28514 DLL1 delta-like 1 (Drosophila)
9427 ECEL1 endothelin converting enzyme-like 1
7098 TLR3 toll-like receptor 3
1942 EFNA1 ephrin-A1
2047 EPHB1 EPH receptor B1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
5733 PTGER3 prostaglandin E receptor 3 (subtype EP3)
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
5099 PCDH7 protocadherin 7
50632 CALY calcyon neuron-specific vesicular protein
10723 SLC12A7 solute carrier family 12 (potassium/chloride transporters), member 7
23531 MMD monocyte to macrophage differentiation-associated
6529 SLC6A1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1
7433 VIPR1 vasoactive intestinal peptide receptor 1
3680 ITGA9 integrin, alpha 9
2690 GHR growth hormone receptor
5789 PTPRD protein tyrosine phosphatase, receptor type, D
1903 S1PR3 sphingosine-1-phosphate receptor 3
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
55890 GPRC5C G protein-coupled receptor, family C, group 5, member C
1525 CXADR coxsackie virus and adenovirus receptor
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
2042 EPHA3 EPH receptor A3
7805 LAPTM5 lysosomal multispanning membrane protein 5


MSCs batch 4 induced and GO:0005887: 46 genes, expected 14.4681, P=2.52228e-12, P adjusted = 2.93623e-07
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
9289 GPR56 G protein-coupled receptor 56
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
6326 SCN2A sodium channel, voltage-gated, type II, alpha subunit
3655 ITGA6 integrin, alpha 6
3383 ICAM1 intercellular adhesion molecule 1
2043 EPHA4 EPH receptor A4
7852 CXCR4 chemokine (C-X-C motif) receptor 4
6533 SLC6A6 solute carrier family 6 (neurotransmitter transporter, taurine), member 6
64399 HHIP hedgehog interacting protein
6330 SCN4B sodium channel, voltage-gated, type IV, beta
358 AQP1 aquaporin 1 (Colton blood group)
6572 SLC18A3 solute carrier family 18 (vesicular acetylcholine), member 3
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3759 KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2
2069 EREG epiregulin
3752 KCND3 potassium voltage-gated channel, Shal-related subfamily, member 3
3977 LIFR leukemia inhibitory factor receptor alpha
2261 FGFR3 fibroblast growth factor receptor 3
28514 DLL1 delta-like 1 (Drosophila)
9427 ECEL1 endothelin converting enzyme-like 1
7098 TLR3 toll-like receptor 3
1942 EFNA1 ephrin-A1
2047 EPHB1 EPH receptor B1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
5733 PTGER3 prostaglandin E receptor 3 (subtype EP3)
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
5099 PCDH7 protocadherin 7
50632 CALY calcyon neuron-specific vesicular protein
10723 SLC12A7 solute carrier family 12 (potassium/chloride transporters), member 7
23531 MMD monocyte to macrophage differentiation-associated
6529 SLC6A1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1
7433 VIPR1 vasoactive intestinal peptide receptor 1
3680 ITGA9 integrin, alpha 9
2690 GHR growth hormone receptor
5789 PTPRD protein tyrosine phosphatase, receptor type, D
1903 S1PR3 sphingosine-1-phosphate receptor 3
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
55890 GPRC5C G protein-coupled receptor, family C, group 5, member C
1525 CXADR coxsackie virus and adenovirus receptor
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
2042 EPHA3 EPH receptor A3
7805 LAPTM5 lysosomal multispanning membrane protein 5


MSCs batch 4 induced and GO:0044459: 57 genes, expected 22.3343, P=3.01106e-11, P adjusted = 3.50523e-06
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
9289 GPR56 G protein-coupled receptor 56
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
6326 SCN2A sodium channel, voltage-gated, type II, alpha subunit
3655 ITGA6 integrin, alpha 6
3383 ICAM1 intercellular adhesion molecule 1
2043 EPHA4 EPH receptor A4
7852 CXCR4 chemokine (C-X-C motif) receptor 4
6533 SLC6A6 solute carrier family 6 (neurotransmitter transporter, taurine), member 6
64399 HHIP hedgehog interacting protein
360 AQP3 aquaporin 3 (Gill blood group)
6330 SCN4B sodium channel, voltage-gated, type IV, beta
22854 NTNG1 netrin G1
358 AQP1 aquaporin 1 (Colton blood group)
6572 SLC18A3 solute carrier family 18 (vesicular acetylcholine), member 3
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3759 KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2
2069 EREG epiregulin
3123 HLA-DRB1 major histocompatibility complex, class II, DR beta 1
3752 KCND3 potassium voltage-gated channel, Shal-related subfamily, member 3
3977 LIFR leukemia inhibitory factor receptor alpha
2261 FGFR3 fibroblast growth factor receptor 3
3728 JUP junction plakoglobin
5493 PPL periplakin
28514 DLL1 delta-like 1 (Drosophila)
9427 ECEL1 endothelin converting enzyme-like 1
7098 TLR3 toll-like receptor 3
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
1942 EFNA1 ephrin-A1
2047 EPHB1 EPH receptor B1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
5733 PTGER3 prostaglandin E receptor 3 (subtype EP3)
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
5099 PCDH7 protocadherin 7
50632 CALY calcyon neuron-specific vesicular protein
10723 SLC12A7 solute carrier family 12 (potassium/chloride transporters), member 7
23531 MMD monocyte to macrophage differentiation-associated
6529 SLC6A1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1
7433 VIPR1 vasoactive intestinal peptide receptor 1
3680 ITGA9 integrin, alpha 9
2690 GHR growth hormone receptor
5789 PTPRD protein tyrosine phosphatase, receptor type, D
23504 RIMBP2 RIMS binding protein 2
8913 CACNA1G calcium channel, voltage-dependent, T type, alpha 1G subunit
1903 S1PR3 sphingosine-1-phosphate receptor 3
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
55890 GPRC5C G protein-coupled receptor, family C, group 5, member C
1525 CXADR coxsackie virus and adenovirus receptor
9783 RIMS3 regulating synaptic membrane exocytosis 3
9368 SLC9A3R1 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
2042 EPHA3 EPH receptor A3
58480 RHOU ras homolog gene family, member U
7805 LAPTM5 lysosomal multispanning membrane protein 5


MSCs batch 4 induced and GO:0007166: 49 genes, expected 18.1841, P=1.57437e-10, P adjusted = 1.83275e-05
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
8840 WISP1 WNT1 inducible signaling pathway protein 1
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
9241 NOG noggin
9289 GPR56 G protein-coupled receptor 56
1949 EFNB3 ephrin-B3
23220 DTX4 deltex 4 homolog (Drosophila)
3655 ITGA6 integrin, alpha 6
26508 HEYL hairy/enhancer-of-split related with YRPW motif-like
57007 CXCR7 chemokine (C-X-C motif) receptor 7
652 BMP4 bone morphogenetic protein 4
2043 EPHA4 EPH receptor A4
27065 D4S234E DNA segment on chromosome 4 (unique) 234 expressed sequence
92737 DNER delta/notch-like EGF repeat containing
2487 FRZB frizzled-related protein
7852 CXCR4 chemokine (C-X-C motif) receptor 4
57537 SORCS2 sortilin-related VPS10 domain containing receptor 2
64399 HHIP hedgehog interacting protein
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
8651 SOCS1 suppressor of cytokine signaling 1
348 APOE apolipoprotein E
3875 KRT18 keratin 18
8532 CPZ carboxypeptidase Z
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
51655 RASD1 RAS, dexamethasone-induced 1
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
1028 CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
4879 NPPB natriuretic peptide precursor B
3977 LIFR leukemia inhibitory factor receptor alpha
2261 FGFR3 fibroblast growth factor receptor 3
28514 DLL1 delta-like 1 (Drosophila)
9427 ECEL1 endothelin converting enzyme-like 1
2047 EPHB1 EPH receptor B1
718 C3 complement component 3
5733 PTGER3 prostaglandin E receptor 3 (subtype EP3)
84634 KISS1R KISS1 receptor
50964 SOST sclerosteosis
50632 CALY calcyon neuron-specific vesicular protein
2263 FGFR2 fibroblast growth factor receptor 2
7433 VIPR1 vasoactive intestinal peptide receptor 1
3680 ITGA9 integrin, alpha 9
9021 SOCS3 suppressor of cytokine signaling 3
5789 PTPRD protein tyrosine phosphatase, receptor type, D
1903 S1PR3 sphingosine-1-phosphate receptor 3
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
55890 GPRC5C G protein-coupled receptor, family C, group 5, member C
9368 SLC9A3R1 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
2042 EPHA3 EPH receptor A3


MSCs batch 4 induced and GO:0007399: 33 genes, expected 9.25807, P=2.53531e-10, P adjusted = 2.9514e-05
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
10439 OLFM1 olfactomedin 1
9241 NOG noggin
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
11341 SCRG1 scrapie responsive protein 1
26508 HEYL hairy/enhancer-of-split related with YRPW motif-like
2824 GPM6B glycoprotein M6B
652 BMP4 bone morphogenetic protein 4
92737 DNER delta/notch-like EGF repeat containing
4761 NEUROD2 neurogenic differentiation 2
7852 CXCR4 chemokine (C-X-C motif) receptor 4
64399 HHIP hedgehog interacting protein
22854 NTNG1 netrin G1
10763 NES nestin
348 APOE apolipoprotein E
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
9355 LHX2 LIM homeobox 2
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
6664 SOX11 SRY (sex determining region Y)-box 11
2047 EPHB1 EPH receptor B1
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
30812 SOX8 SRY (sex determining region Y)-box 8
3800 KIF5C kinesin family member 5C
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence
3897 L1CAM L1 cell adhesion molecule
4744 NEFH neurofilament, heavy polypeptide
1400 CRMP1 collapsin response mediator protein 1


MSCs batch 4 induced and GO:0005615: 26 genes, expected 6.01455, P=4.19841e-10, P adjusted = 4.88745e-05
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
9241 NOG noggin
11341 SCRG1 scrapie responsive protein 1
5122 PCSK1 proprotein convertase subtilisin/kexin type 1
3383 ICAM1 intercellular adhesion molecule 1
7425 VGF VGF nerve growth factor inducible
1191 CLU clusterin
652 BMP4 bone morphogenetic protein 4
8788 DLK1 delta-like 1 homolog (Drosophila)
55801 IL26 interleukin 26
55959 SULF2 sulfatase 2
9244 CRLF1 cytokine receptor-like factor 1
348 APOE apolipoprotein E
3589 IL11 interleukin 11
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
1314 COPA coatomer protein complex, subunit alpha
4879 NPPB natriuretic peptide precursor B
54360 CYTL1 cytokine-like 1
9547 CXCL14 chemokine (C-X-C motif) ligand 14
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
58189 WFDC1 WAP four-disulfide core domain 1
90139 TSPAN18 tetraspanin 18
11009 IL24 interleukin 24
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0031012: 20 genes, expected 3.84369, P=2.10197e-09, P adjusted = 0.000244695
80144 FRAS1 Fraser syndrome 1
4147 MATN2 matrilin 2
2201 FBN2 fibrillin 2
652 BMP4 bone morphogenetic protein 4
50509 COL5A3 collagen, type V, alpha 3
22854 NTNG1 netrin G1
64856 VWA1 von Willebrand factor A domain containing 1
89932 PAPLN papilin, proteoglycan-like sulfated glycoprotein
1299 COL9A3 collagen, type IX, alpha 3
10417 SPON2 spondin 2, extracellular matrix protein
8532 CPZ carboxypeptidase Z
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
3911 LAMA5 laminin, alpha 5
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
57124 CD248 CD248 molecule, endosialin
1277 COL1A1 collagen, type I, alpha 1
1311 COMP cartilage oligomeric matrix protein
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0005578: 19 genes, expected 3.67769, P=6.04837e-09, P adjusted = 0.000704103
80144 FRAS1 Fraser syndrome 1
4147 MATN2 matrilin 2
2201 FBN2 fibrillin 2
652 BMP4 bone morphogenetic protein 4
50509 COL5A3 collagen, type V, alpha 3
22854 NTNG1 netrin G1
64856 VWA1 von Willebrand factor A domain containing 1
89932 PAPLN papilin, proteoglycan-like sulfated glycoprotein
1299 COL9A3 collagen, type IX, alpha 3
10417 SPON2 spondin 2, extracellular matrix protein
8532 CPZ carboxypeptidase Z
1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39)
3911 LAMA5 laminin, alpha 5
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
57124 CD248 CD248 molecule, endosialin
1277 COL1A1 collagen, type I, alpha 1
1311 COMP cartilage oligomeric matrix protein
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0005509: 33 genes, expected 11.2885, P=3.40011e-08, P adjusted = 0.00395813
11240 PADI2 peptidyl arginine deiminase, type II
80144 FRAS1 Fraser syndrome 1
57685 CACHD1 cache domain containing 1
55118 CRTAC1 cartilage acidic protein 1
1013 CDH15 cadherin 15, M-cadherin (myotubule)
4147 MATN2 matrilin 2
5122 PCSK1 proprotein convertase subtilisin/kexin type 1
2201 FBN2 fibrillin 2
3655 ITGA6 integrin, alpha 6
92737 DNER delta/notch-like EGF repeat containing
5101 PCDH9 protocadherin 9
55033 FKBP14 FK506 binding protein 14, 22 kDa
9254 CACNA2D2 calcium channel, voltage-dependent, alpha 2/delta subunit 2
8788 DLK1 delta-like 1 homolog (Drosophila)
55959 SULF2 sulfatase 2
1008 CDH10 cadherin 10, type 2 (T2-cadherin)
6840 SVIL supervillin
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
94015 TTYH2 tweety homolog 2 (Drosophila)
1314 COPA coatomer protein complex, subunit alpha
5979 RET ret proto-oncogene
28514 DLL1 delta-like 1 (Drosophila)
4885 NPTX2 neuronal pentraxin II
164633 CABP7 calcium binding protein 7
1953 MEGF6 multiple EGF-like-domains 6
81035 COLEC12 collectin sub-family member 12
5099 PCDH7 protocadherin 7
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
3680 ITGA9 integrin, alpha 9
57124 CD248 CD248 molecule, endosialin
8913 CACNA1G calcium channel, voltage-dependent, T type, alpha 1G subunit
1311 COMP cartilage oligomeric matrix protein
80303 EFHD1 EF-hand domain family, member D1


MSCs batch 4 induced and GO:0007155: 29 genes, expected 9.20699, P=5.12269e-08, P adjusted = 0.00596342
8840 WISP1 WNT1 inducible signaling pathway protein 1
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
9241 NOG noggin
9289 GPR56 G protein-coupled receptor 56
1013 CDH15 cadherin 15, M-cadherin (myotubule)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
4162 MCAM melanoma cell adhesion molecule
3655 ITGA6 integrin, alpha 6
3383 ICAM1 intercellular adhesion molecule 1
5101 PCDH9 protocadherin 9
3671 ISLR immunoglobulin superfamily containing leucine-rich repeat
50509 COL5A3 collagen, type V, alpha 3
199731 CADM4 cell adhesion molecule 4
10154 PLXNC1 plexin C1
10417 SPON2 spondin 2, extracellular matrix protein
6347 CCL2 chemokine (C-C motif) ligand 2
1008 CDH10 cadherin 10, type 2 (T2-cadherin)
5979 RET ret proto-oncogene
3728 JUP junction plakoglobin
28514 DLL1 delta-like 1 (Drosophila)
3911 LAMA5 laminin, alpha 5
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
5099 PCDH7 protocadherin 7
3680 ITGA9 integrin, alpha 9
1525 CXADR coxsackie virus and adenovirus receptor
1311 COMP cartilage oligomeric matrix protein
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
3730 KAL1 Kallmann syndrome 1 sequence
3897 L1CAM L1 cell adhesion molecule


MSCs batch 4 induced and GO:0022610: 29 genes, expected 9.20699, P=5.12269e-08, P adjusted = 0.00596342
8840 WISP1 WNT1 inducible signaling pathway protein 1
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
9241 NOG noggin
9289 GPR56 G protein-coupled receptor 56
1013 CDH15 cadherin 15, M-cadherin (myotubule)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
4162 MCAM melanoma cell adhesion molecule
3655 ITGA6 integrin, alpha 6
3383 ICAM1 intercellular adhesion molecule 1
5101 PCDH9 protocadherin 9
3671 ISLR immunoglobulin superfamily containing leucine-rich repeat
50509 COL5A3 collagen, type V, alpha 3
199731 CADM4 cell adhesion molecule 4
10154 PLXNC1 plexin C1
10417 SPON2 spondin 2, extracellular matrix protein
6347 CCL2 chemokine (C-C motif) ligand 2
1008 CDH10 cadherin 10, type 2 (T2-cadherin)
5979 RET ret proto-oncogene
3728 JUP junction plakoglobin
28514 DLL1 delta-like 1 (Drosophila)
3911 LAMA5 laminin, alpha 5
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
5099 PCDH7 protocadherin 7
3680 ITGA9 integrin, alpha 9
1525 CXADR coxsackie virus and adenovirus receptor
1311 COMP cartilage oligomeric matrix protein
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
3730 KAL1 Kallmann syndrome 1 sequence
3897 L1CAM L1 cell adhesion molecule


MSCs batch 4 induced and GO:0005102: 29 genes, expected 9.539, P=1.089e-07, P adjusted = 0.0126773
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
1949 EFNB3 ephrin-B3
7425 VGF VGF nerve growth factor inducible
652 BMP4 bone morphogenetic protein 4
27065 D4S234E DNA segment on chromosome 4 (unique) 234 expressed sequence
92737 DNER delta/notch-like EGF repeat containing
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
8651 SOCS1 suppressor of cytokine signaling 1
55801 IL26 interleukin 26
10154 PLXNC1 plexin C1
348 APOE apolipoprotein E
3589 IL11 interleukin 11
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
1314 COPA coatomer protein complex, subunit alpha
4879 NPPB natriuretic peptide precursor B
54360 CYTL1 cytokine-like 1
28514 DLL1 delta-like 1 (Drosophila)
9547 CXCL14 chemokine (C-X-C motif) ligand 14
3911 LAMA5 laminin, alpha 5
1942 EFNA1 ephrin-A1
718 C3 complement component 3
50632 CALY calcyon neuron-specific vesicular protein
1081 CGA glycoprotein hormones, alpha polypeptide
11009 IL24 interleukin 24
9368 SLC9A3R1 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
80310 PDGFD platelet derived growth factor D


MSCs batch 4 induced and GO:0048699: 17 genes, expected 3.53722, P=1.11154e-07, P adjusted = 0.0129397
9241 NOG noggin
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
92737 DNER delta/notch-like EGF repeat containing
4761 NEUROD2 neurogenic differentiation 2
7852 CXCR4 chemokine (C-X-C motif) receptor 4
64399 HHIP hedgehog interacting protein
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
3800 KIF5C kinesin family member 5C
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0048468: 22 genes, expected 6.19333, P=3.11133e-07, P adjusted = 0.0362196
9241 NOG noggin
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
652 BMP4 bone morphogenetic protein 4
92737 DNER delta/notch-like EGF repeat containing
4761 NEUROD2 neurogenic differentiation 2
7852 CXCR4 chemokine (C-X-C motif) receptor 4
64399 HHIP hedgehog interacting protein
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
2069 EREG epiregulin
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
3911 LAMA5 laminin, alpha 5
30812 SOX8 SRY (sex determining region Y)-box 8
3800 KIF5C kinesin family member 5C
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0022008: 17 genes, expected 3.80539, P=3.1443e-07, P adjusted = 0.0366034
9241 NOG noggin
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
92737 DNER delta/notch-like EGF repeat containing
4761 NEUROD2 neurogenic differentiation 2
7852 CXCR4 chemokine (C-X-C motif) receptor 4
64399 HHIP hedgehog interacting protein
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
3800 KIF5C kinesin family member 5C
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0048513: 39 genes, expected 16.358, P=3.85273e-07, P adjusted = 0.0448505
84525 HOPX HOP homeobox
9241 NOG noggin
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
1397 CRIP2 cysteine-rich protein 2
7425 VGF VGF nerve growth factor inducible
652 BMP4 bone morphogenetic protein 4
6599 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
92737 DNER delta/notch-like EGF repeat containing
2487 FRZB frizzled-related protein
7852 CXCR4 chemokine (C-X-C motif) receptor 4
64399 HHIP hedgehog interacting protein
50509 COL5A3 collagen, type V, alpha 3
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3589 IL11 interleukin 11
9355 LHX2 LIM homeobox 2
596 BCL2 B-cell CLL/lymphoma 2
6347 CCL2 chemokine (C-C motif) ligand 2
6840 SVIL supervillin
2069 EREG epiregulin
5076 PAX2 paired box 2
1382 CRABP2 cellular retinoic acid binding protein 2
4879 NPPB natriuretic peptide precursor B
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
54360 CYTL1 cytokine-like 1
5493 PPL periplakin
28514 DLL1 delta-like 1 (Drosophila)
7098 TLR3 toll-like receptor 3
3911 LAMA5 laminin, alpha 5
6591 SNAI2 snail homolog 2 (Drosophila)
50964 SOST sclerosteosis
2690 GHR growth hormone receptor
3955 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
1277 COL1A1 collagen, type I, alpha 1
1311 COMP cartilage oligomeric matrix protein
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain


MSCs batch 4 induced and GO:0004872: 40 genes, expected 17.0732, P=4.19603e-07, P adjusted = 0.0488468
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
79971 GPR177 G protein-coupled receptor 177
9289 GPR56 G protein-coupled receptor 56
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3655 ITGA6 integrin, alpha 6
3383 ICAM1 intercellular adhesion molecule 1
57007 CXCR7 chemokine (C-X-C motif) receptor 7
2043 EPHA4 EPH receptor A4
92737 DNER delta/notch-like EGF repeat containing
7852 CXCR4 chemokine (C-X-C motif) receptor 4
57537 SORCS2 sortilin-related VPS10 domain containing receptor 2
10154 PLXNC1 plexin C1
9244 CRLF1 cytokine receptor-like factor 1
90249 UNC5A unc-5 homolog A (C. elegans)
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
5157 PDGFRL platelet-derived growth factor receptor-like
3977 LIFR leukemia inhibitory factor receptor alpha
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
7098 TLR3 toll-like receptor 3
3911 LAMA5 laminin, alpha 5
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
2047 EPHB1 EPH receptor B1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
5733 PTGER3 prostaglandin E receptor 3 (subtype EP3)
84634 KISS1R KISS1 receptor
81035 COLEC12 collectin sub-family member 12
2263 FGFR2 fibroblast growth factor receptor 2
23531 MMD monocyte to macrophage differentiation-associated
7433 VIPR1 vasoactive intestinal peptide receptor 1
3680 ITGA9 integrin, alpha 9
2690 GHR growth hormone receptor
5789 PTPRD protein tyrosine phosphatase, receptor type, D
1903 S1PR3 sphingosine-1-phosphate receptor 3
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
55890 GPRC5C G protein-coupled receptor, family C, group 5, member C
1525 CXADR coxsackie virus and adenovirus receptor
2042 EPHA3 EPH receptor A3


MSCs batch 4 induced and GO:0004888: 29 genes, expected 10.4457, P=7.13354e-07, P adjusted = 0.083043
9289 GPR56 G protein-coupled receptor 56
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3383 ICAM1 intercellular adhesion molecule 1
2043 EPHA4 EPH receptor A4
92737 DNER delta/notch-like EGF repeat containing
7852 CXCR4 chemokine (C-X-C motif) receptor 4
57537 SORCS2 sortilin-related VPS10 domain containing receptor 2
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
5157 PDGFRL platelet-derived growth factor receptor-like
3977 LIFR leukemia inhibitory factor receptor alpha
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
7098 TLR3 toll-like receptor 3
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
2047 EPHB1 EPH receptor B1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
5733 PTGER3 prostaglandin E receptor 3 (subtype EP3)
84634 KISS1R KISS1 receptor
81035 COLEC12 collectin sub-family member 12
2263 FGFR2 fibroblast growth factor receptor 2
7433 VIPR1 vasoactive intestinal peptide receptor 1
2690 GHR growth hormone receptor
5789 PTPRD protein tyrosine phosphatase, receptor type, D
1903 S1PR3 sphingosine-1-phosphate receptor 3
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
55890 GPRC5C G protein-coupled receptor, family C, group 5, member C
2042 EPHA3 EPH receptor A3


MSCs batch 4 induced and GO:0048523: 36 genes, expected 14.9023, P=8.41039e-07, P adjusted = 0.097907
84525 HOPX HOP homeobox
9241 NOG noggin
1917 EEF1A2 eukaryotic translation elongation factor 1 alpha 2
3280 HES1 hairy and enhancer of split 1, (Drosophila)
5655 KLK10 kallikrein-related peptidase 10
652 BMP4 bone morphogenetic protein 4
2487 FRZB frizzled-related protein
9774 BCLAF1 BCL2-associated transcription factor 1
64399 HHIP hedgehog interacting protein
199731 CADM4 cell adhesion molecule 4
10643 IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3
8651 SOCS1 suppressor of cytokine signaling 1
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
348 APOE apolipoprotein E
3589 IL11 interleukin 11
50861 STMN3 stathmin-like 3
3875 KRT18 keratin 18
596 BCL2 B-cell CLL/lymphoma 2
6347 CCL2 chemokine (C-C motif) ligand 2
6840 SVIL supervillin
2069 EREG epiregulin
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
5076 PAX2 paired box 2
1028 CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
4879 NPPB natriuretic peptide precursor B
2261 FGFR3 fibroblast growth factor receptor 3
28514 DLL1 delta-like 1 (Drosophila)
7098 TLR3 toll-like receptor 3
6591 SNAI2 snail homolog 2 (Drosophila)
84634 KISS1R KISS1 receptor
58189 WFDC1 WAP four-disulfide core domain 1
50964 SOST sclerosteosis
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
5296 PIK3R2 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
9021 SOCS3 suppressor of cytokine signaling 3
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain


MSCs batch 4 induced and GO:0030154: 36 genes, expected 14.9406, P=8.93187e-07, P adjusted = 0.103978
84525 HOPX HOP homeobox
9241 NOG noggin
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2824 GPM6B glycoprotein M6B
652 BMP4 bone morphogenetic protein 4
92737 DNER delta/notch-like EGF repeat containing
4761 NEUROD2 neurogenic differentiation 2
2487 FRZB frizzled-related protein
7852 CXCR4 chemokine (C-X-C motif) receptor 4
64399 HHIP hedgehog interacting protein
360 AQP3 aquaporin 3 (Gill blood group)
22854 NTNG1 netrin G1
8651 SOCS1 suppressor of cytokine signaling 1
348 APOE apolipoprotein E
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3589 IL11 interleukin 11
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
2069 EREG epiregulin
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
54360 CYTL1 cytokine-like 1
5493 PPL periplakin
28514 DLL1 delta-like 1 (Drosophila)
7098 TLR3 toll-like receptor 3
3911 LAMA5 laminin, alpha 5
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
30812 SOX8 SRY (sex determining region Y)-box 8
3800 KIF5C kinesin family member 5C
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence
3897 L1CAM L1 cell adhesion molecule
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain


MSCs batch 4 induced and GO:0048666: 13 genes, expected 2.42625, P=1.06192e-06, P adjusted = 0.12362
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
4761 NEUROD2 neurogenic differentiation 2
7852 CXCR4 chemokine (C-X-C motif) receptor 4
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
3800 KIF5C kinesin family member 5C
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0051093: 18 genes, expected 4.64819, P=1.13158e-06, P adjusted = 0.13173
84525 HOPX HOP homeobox
9241 NOG noggin
1917 EEF1A2 eukaryotic translation elongation factor 1 alpha 2
3280 HES1 hairy and enhancer of split 1, (Drosophila)
652 BMP4 bone morphogenetic protein 4
348 APOE apolipoprotein E
3875 KRT18 keratin 18
596 BCL2 B-cell CLL/lymphoma 2
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
4879 NPPB natriuretic peptide precursor B
28514 DLL1 delta-like 1 (Drosophila)
7098 TLR3 toll-like receptor 3
50964 SOST sclerosteosis
5296 PIK3R2 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
9021 SOCS3 suppressor of cytokine signaling 3
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain


MSCs batch 4 induced and GO:0048519: 37 genes, expected 15.9239, P=1.46842e-06, P adjusted = 0.170942
84525 HOPX HOP homeobox
9241 NOG noggin
1917 EEF1A2 eukaryotic translation elongation factor 1 alpha 2
3280 HES1 hairy and enhancer of split 1, (Drosophila)
5655 KLK10 kallikrein-related peptidase 10
652 BMP4 bone morphogenetic protein 4
2487 FRZB frizzled-related protein
9774 BCLAF1 BCL2-associated transcription factor 1
64399 HHIP hedgehog interacting protein
199731 CADM4 cell adhesion molecule 4
10643 IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3
8651 SOCS1 suppressor of cytokine signaling 1
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
348 APOE apolipoprotein E
3589 IL11 interleukin 11
50861 STMN3 stathmin-like 3
3875 KRT18 keratin 18
596 BCL2 B-cell CLL/lymphoma 2
6347 CCL2 chemokine (C-C motif) ligand 2
6840 SVIL supervillin
2069 EREG epiregulin
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
5076 PAX2 paired box 2
1028 CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
4879 NPPB natriuretic peptide precursor B
2261 FGFR3 fibroblast growth factor receptor 3
28514 DLL1 delta-like 1 (Drosophila)
7098 TLR3 toll-like receptor 3
6591 SNAI2 snail homolog 2 (Drosophila)
84634 KISS1R KISS1 receptor
58189 WFDC1 WAP four-disulfide core domain 1
50964 SOST sclerosteosis
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
7138 TNNT1 troponin T type 1 (skeletal, slow)
5296 PIK3R2 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
9021 SOCS3 suppressor of cytokine signaling 3
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain


MSCs batch 4 induced and GO:0007167: 17 genes, expected 4.29064, P=1.65764e-06, P adjusted = 0.19297
9241 NOG noggin
1949 EFNB3 ephrin-B3
652 BMP4 bone morphogenetic protein 4
2043 EPHA4 EPH receptor A4
64399 HHIP hedgehog interacting protein
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
8651 SOCS1 suppressor of cytokine signaling 1
2069 EREG epiregulin
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
1028 CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
2261 FGFR3 fibroblast growth factor receptor 3
2047 EPHB1 EPH receptor B1
50964 SOST sclerosteosis
2263 FGFR2 fibroblast growth factor receptor 2
9021 SOCS3 suppressor of cytokine signaling 3
5789 PTPRD protein tyrosine phosphatase, receptor type, D
2042 EPHA3 EPH receptor A3


MSCs batch 4 induced and GO:0004714: 8 genes, expected 0.855573, P=2.1587e-06, P adjusted = 0.251298
1949 EFNB3 ephrin-B3
2043 EPHA4 EPH receptor A4
5157 PDGFRL platelet-derived growth factor receptor-like
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
2047 EPHB1 EPH receptor B1
2263 FGFR2 fibroblast growth factor receptor 2
2042 EPHA3 EPH receptor A3


MSCs batch 4 induced and GO:0048869: 37 genes, expected 16.3964, P=2.90434e-06, P adjusted = 0.3381
84525 HOPX HOP homeobox
9241 NOG noggin
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2824 GPM6B glycoprotein M6B
652 BMP4 bone morphogenetic protein 4
92737 DNER delta/notch-like EGF repeat containing
4761 NEUROD2 neurogenic differentiation 2
2487 FRZB frizzled-related protein
7852 CXCR4 chemokine (C-X-C motif) receptor 4
64399 HHIP hedgehog interacting protein
360 AQP3 aquaporin 3 (Gill blood group)
22854 NTNG1 netrin G1
8651 SOCS1 suppressor of cytokine signaling 1
348 APOE apolipoprotein E
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3589 IL11 interleukin 11
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
2069 EREG epiregulin
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
54360 CYTL1 cytokine-like 1
5493 PPL periplakin
28514 DLL1 delta-like 1 (Drosophila)
7098 TLR3 toll-like receptor 3
3911 LAMA5 laminin, alpha 5
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
30812 SOX8 SRY (sex determining region Y)-box 8
3800 KIF5C kinesin family member 5C
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence
3897 L1CAM L1 cell adhesion molecule
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
58480 RHOU ras homolog gene family, member U


MSCs batch 4 induced and GO:0030182: 14 genes, expected 3.11582, P=3.30292e-06, P adjusted = 0.384499
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
4761 NEUROD2 neurogenic differentiation 2
7852 CXCR4 chemokine (C-X-C motif) receptor 4
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
3800 KIF5C kinesin family member 5C
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0009888: 16 genes, expected 4.17571, P=5.16138e-06, P adjusted = 0.600846
84525 HOPX HOP homeobox
9241 NOG noggin
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
652 BMP4 bone morphogenetic protein 4
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
9355 LHX2 LIM homeobox 2
596 BCL2 B-cell CLL/lymphoma 2
1382 CRABP2 cellular retinoic acid binding protein 2
2261 FGFR3 fibroblast growth factor receptor 3
54360 CYTL1 cytokine-like 1
5493 PPL periplakin
28514 DLL1 delta-like 1 (Drosophila)
6591 SNAI2 snail homolog 2 (Drosophila)
50964 SOST sclerosteosis
1277 COL1A1 collagen, type I, alpha 1


MSCs batch 4 induced and GO:0042613: 4 genes, expected 0.140467, P=7.98962e-06, P adjusted = 0.930087
3123 HLA-DRB1 major histocompatibility complex, class II, DR beta 1
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1


MSCs batch 4 induced and GO:0031175: 11 genes, expected 2.13255, P=1.03853e-05, P adjusted = 1
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
7852 CXCR4 chemokine (C-X-C motif) receptor 4
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
50861 STMN3 stathmin-like 3
10417 SPON2 spondin 2, extracellular matrix protein
5076 PAX2 paired box 2
3800 KIF5C kinesin family member 5C
80303 EFHD1 EF-hand domain family, member D1
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0019199: 8 genes, expected 1.05989, P=1.095e-05, P adjusted = 1
1949 EFNB3 ephrin-B3
2043 EPHA4 EPH receptor A4
5157 PDGFRL platelet-derived growth factor receptor-like
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
2047 EPHB1 EPH receptor B1
2263 FGFR2 fibroblast growth factor receptor 2
2042 EPHA3 EPH receptor A3


MSCs batch 4 induced and GO:0004871: 44 genes, expected 22.5003, P=1.24093e-05, P adjusted = 1
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
79971 GPR177 G protein-coupled receptor 177
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
9289 GPR56 G protein-coupled receptor 56
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3655 ITGA6 integrin, alpha 6
3383 ICAM1 intercellular adhesion molecule 1
57007 CXCR7 chemokine (C-X-C motif) receptor 7
652 BMP4 bone morphogenetic protein 4
2043 EPHA4 EPH receptor A4
92737 DNER delta/notch-like EGF repeat containing
7852 CXCR4 chemokine (C-X-C motif) receptor 4
57537 SORCS2 sortilin-related VPS10 domain containing receptor 2
10154 PLXNC1 plexin C1
9244 CRLF1 cytokine receptor-like factor 1
90249 UNC5A unc-5 homolog A (C. elegans)
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
5157 PDGFRL platelet-derived growth factor receptor-like
6347 CCL2 chemokine (C-C motif) ligand 2
3977 LIFR leukemia inhibitory factor receptor alpha
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
7098 TLR3 toll-like receptor 3
3911 LAMA5 laminin, alpha 5
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
2047 EPHB1 EPH receptor B1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
5733 PTGER3 prostaglandin E receptor 3 (subtype EP3)
84634 KISS1R KISS1 receptor
81035 COLEC12 collectin sub-family member 12
2263 FGFR2 fibroblast growth factor receptor 2
23531 MMD monocyte to macrophage differentiation-associated
7433 VIPR1 vasoactive intestinal peptide receptor 1
3680 ITGA9 integrin, alpha 9
2690 GHR growth hormone receptor
5789 PTPRD protein tyrosine phosphatase, receptor type, D
1903 S1PR3 sphingosine-1-phosphate receptor 3
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
55890 GPRC5C G protein-coupled receptor, family C, group 5, member C
1525 CXADR coxsackie virus and adenovirus receptor
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
2042 EPHA3 EPH receptor A3


MSCs batch 4 induced and GO:0060089: 44 genes, expected 22.5003, P=1.24093e-05, P adjusted = 1
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
79971 GPR177 G protein-coupled receptor 177
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
9289 GPR56 G protein-coupled receptor 56
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3655 ITGA6 integrin, alpha 6
3383 ICAM1 intercellular adhesion molecule 1
57007 CXCR7 chemokine (C-X-C motif) receptor 7
652 BMP4 bone morphogenetic protein 4
2043 EPHA4 EPH receptor A4
92737 DNER delta/notch-like EGF repeat containing
7852 CXCR4 chemokine (C-X-C motif) receptor 4
57537 SORCS2 sortilin-related VPS10 domain containing receptor 2
10154 PLXNC1 plexin C1
9244 CRLF1 cytokine receptor-like factor 1
90249 UNC5A unc-5 homolog A (C. elegans)
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
5157 PDGFRL platelet-derived growth factor receptor-like
6347 CCL2 chemokine (C-C motif) ligand 2
3977 LIFR leukemia inhibitory factor receptor alpha
5979 RET ret proto-oncogene
2261 FGFR3 fibroblast growth factor receptor 3
7098 TLR3 toll-like receptor 3
3911 LAMA5 laminin, alpha 5
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
2047 EPHB1 EPH receptor B1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
5733 PTGER3 prostaglandin E receptor 3 (subtype EP3)
84634 KISS1R KISS1 receptor
81035 COLEC12 collectin sub-family member 12
2263 FGFR2 fibroblast growth factor receptor 2
23531 MMD monocyte to macrophage differentiation-associated
7433 VIPR1 vasoactive intestinal peptide receptor 1
3680 ITGA9 integrin, alpha 9
2690 GHR growth hormone receptor
5789 PTPRD protein tyrosine phosphatase, receptor type, D
1903 S1PR3 sphingosine-1-phosphate receptor 3
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
55890 GPRC5C G protein-coupled receptor, family C, group 5, member C
1525 CXADR coxsackie virus and adenovirus receptor
23767 FLRT3 fibronectin leucine rich transmembrane protein 3
2042 EPHA3 EPH receptor A3


MSCs batch 4 induced and GO:0050793: 27 genes, expected 10.8926, P=1.40904e-05, P adjusted = 1
84525 HOPX HOP homeobox
9241 NOG noggin
1917 EEF1A2 eukaryotic translation elongation factor 1 alpha 2
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
652 BMP4 bone morphogenetic protein 4
9774 BCLAF1 BCL2-associated transcription factor 1
9540 TP53I3 tumor protein p53 inducible protein 3
360 AQP3 aquaporin 3 (Gill blood group)
348 APOE apolipoprotein E
3875 KRT18 keratin 18
596 BCL2 B-cell CLL/lymphoma 2
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
4879 NPPB natriuretic peptide precursor B
2261 FGFR3 fibroblast growth factor receptor 3
28514 DLL1 delta-like 1 (Drosophila)
7098 TLR3 toll-like receptor 3
3911 LAMA5 laminin, alpha 5
50964 SOST sclerosteosis
5296 PIK3R2 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
9806 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
114769 CARD16 caspase recruitment domain family, member 16
9021 SOCS3 suppressor of cytokine signaling 3
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
58480 RHOU ras homolog gene family, member U


MSCs batch 4 induced and GO:0001657: 5 genes, expected 0.344783, P=2.09535e-05, P adjusted = 1
9241 NOG noggin
652 BMP4 bone morphogenetic protein 4
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
3911 LAMA5 laminin, alpha 5


MSCs batch 4 induced and GO:0009790: 15 genes, expected 4.20125, P=2.34097e-05, P adjusted = 1
84525 HOPX HOP homeobox
9241 NOG noggin
2201 FBN2 fibrillin 2
652 BMP4 bone morphogenetic protein 4
7852 CXCR4 chemokine (C-X-C motif) receptor 4
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
3216 HOXB6 homeobox B6
5046 PCSK6 proprotein convertase subtilisin/kexin type 6
5076 PAX2 paired box 2
1382 CRABP2 cellular retinoic acid binding protein 2
5979 RET ret proto-oncogene
28514 DLL1 delta-like 1 (Drosophila)
3911 LAMA5 laminin, alpha 5
10742 RAI2 retinoic acid induced 2
30812 SOX8 SRY (sex determining region Y)-box 8


MSCs batch 4 induced and GO:0002504: 4 genes, expected 0.178776, P=2.35133e-05, P adjusted = 1
3123 HLA-DRB1 major histocompatibility complex, class II, DR beta 1
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1


MSCs batch 4 induced and GO:0042325: 8 genes, expected 1.23867, P=3.44099e-05, P adjusted = 1
894 CCND2 cyclin D2
652 BMP4 bone morphogenetic protein 4
8651 SOCS1 suppressor of cytokine signaling 1
3589 IL11 interleukin 11
5577 PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta
2069 EREG epiregulin
2261 FGFR3 fibroblast growth factor receptor 3
9021 SOCS3 suppressor of cytokine signaling 3


MSCs batch 4 induced and GO:0002376: 26 genes, expected 10.8415, P=3.58336e-05, P adjusted = 1
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
1397 CRIP2 cysteine-rich protein 2
3383 ICAM1 intercellular adhesion molecule 1
1191 CLU clusterin
652 BMP4 bone morphogenetic protein 4
7852 CXCR4 chemokine (C-X-C motif) receptor 4
360 AQP3 aquaporin 3 (Gill blood group)
55801 IL26 interleukin 26
3589 IL11 interleukin 11
10417 SPON2 spondin 2, extracellular matrix protein
596 BCL2 B-cell CLL/lymphoma 2
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
3123 HLA-DRB1 major histocompatibility complex, class II, DR beta 1
28514 DLL1 delta-like 1 (Drosophila)
9547 CXCL14 chemokine (C-X-C motif) ligand 14
7098 TLR3 toll-like receptor 3
3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1
3122 HLA-DRA major histocompatibility complex, class II, DR alpha
718 C3 complement component 3
81035 COLEC12 collectin sub-family member 12
7433 VIPR1 vasoactive intestinal peptide receptor 1
11009 IL24 interleukin 24
3113 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1
972 CD74 CD74 molecule, major histocompatibility complex, class II invariant chain
57580 PREX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1


MSCs batch 4 induced and GO:0000904: 10 genes, expected 2.03039, P=3.90361e-05, P adjusted = 1
9241 NOG noggin
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
7852 CXCR4 chemokine (C-X-C motif) receptor 4
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
10417 SPON2 spondin 2, extracellular matrix protein
5076 PAX2 paired box 2
3800 KIF5C kinesin family member 5C
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0001932: 7 genes, expected 0.944961, P=4.43167e-05, P adjusted = 1
894 CCND2 cyclin D2
652 BMP4 bone morphogenetic protein 4
8651 SOCS1 suppressor of cytokine signaling 1
3589 IL11 interleukin 11
5577 PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta
2261 FGFR3 fibroblast growth factor receptor 3
9021 SOCS3 suppressor of cytokine signaling 3


MSCs batch 4 induced and GO:0009887: 17 genes, expected 5.55484, P=4.78001e-05, P adjusted = 1
9241 NOG noggin
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
652 BMP4 bone morphogenetic protein 4
6599 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
7852 CXCR4 chemokine (C-X-C motif) receptor 4
64399 HHIP hedgehog interacting protein
50509 COL5A3 collagen, type V, alpha 3
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
5076 PAX2 paired box 2
4879 NPPB natriuretic peptide precursor B
3911 LAMA5 laminin, alpha 5
3955 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
1311 COMP cartilage oligomeric matrix protein


MSCs batch 4 induced and GO:0007267: 20 genes, expected 7.3043, P=4.97293e-05, P adjusted = 1
8840 WISP1 WNT1 inducible signaling pathway protein 1
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
9289 GPR56 G protein-coupled receptor 56
1949 EFNB3 ephrin-B3
5122 PCSK1 proprotein convertase subtilisin/kexin type 1
18 ABAT 4-aminobutyrate aminotransferase
10815 CPLX1 complexin 1
55801 IL26 interleukin 26
348 APOE apolipoprotein E
1134 CHRNA1 cholinergic receptor, nicotinic, alpha 1 (muscle)
3589 IL11 interleukin 11
2069 EREG epiregulin
9547 CXCL14 chemokine (C-X-C motif) ligand 14
1942 EFNA1 ephrin-A1
4885 NPTX2 neuronal pentraxin II
6591 SNAI2 snail homolog 2 (Drosophila)
6529 SLC6A1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1
7433 VIPR1 vasoactive intestinal peptide receptor 1
1081 CGA glycoprotein hormones, alpha polypeptide
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2


MSCs batch 4 induced and GO:0019220: 8 genes, expected 1.31528, P=5.30093e-05, P adjusted = 1
894 CCND2 cyclin D2
652 BMP4 bone morphogenetic protein 4
8651 SOCS1 suppressor of cytokine signaling 1
3589 IL11 interleukin 11
5577 PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta
2069 EREG epiregulin
2261 FGFR3 fibroblast growth factor receptor 3
9021 SOCS3 suppressor of cytokine signaling 3


MSCs batch 4 induced and GO:0051174: 8 genes, expected 1.31528, P=5.30093e-05, P adjusted = 1
894 CCND2 cyclin D2
652 BMP4 bone morphogenetic protein 4
8651 SOCS1 suppressor of cytokine signaling 1
3589 IL11 interleukin 11
5577 PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta
2069 EREG epiregulin
2261 FGFR3 fibroblast growth factor receptor 3
9021 SOCS3 suppressor of cytokine signaling 3


MSCs batch 4 induced and GO:0005003: 4 genes, expected 0.217086, P=5.42427e-05, P adjusted = 1
1949 EFNB3 ephrin-B3
2043 EPHA4 EPH receptor A4
2047 EPHB1 EPH receptor B1
2042 EPHA3 EPH receptor A3


MSCs batch 4 induced and GO:0007409: 9 genes, expected 1.74946, P=6.79321e-05, P adjusted = 1
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
7852 CXCR4 chemokine (C-X-C motif) receptor 4
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
10417 SPON2 spondin 2, extracellular matrix protein
5076 PAX2 paired box 2
3800 KIF5C kinesin family member 5C
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0009605: 21 genes, expected 8.12156, P=7.29892e-05, P adjusted = 1
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
84525 HOPX HOP homeobox
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
9241 NOG noggin
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
9435 CHST2 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2
1191 CLU clusterin
7852 CXCR4 chemokine (C-X-C motif) receptor 4
360 AQP3 aquaporin 3 (Gill blood group)
348 APOE apolipoprotein E
3589 IL11 interleukin 11
8534 CHST1 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
6347 CCL2 chemokine (C-C motif) ligand 2
2069 EREG epiregulin
9547 CXCL14 chemokine (C-X-C motif) ligand 14
7098 TLR3 toll-like receptor 3
718 C3 complement component 3
1036 CDO1 cysteine dioxygenase, type I
131566 DCBLD2 discoidin, CUB and LCCL domain containing 2
1903 S1PR3 sphingosine-1-phosphate receptor 3
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0048729: 7 genes, expected 1.02158, P=7.33113e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
652 BMP4 bone morphogenetic protein 4
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
596 BCL2 B-cell CLL/lymphoma 2
2261 FGFR3 fibroblast growth factor receptor 3
5493 PPL periplakin
28514 DLL1 delta-like 1 (Drosophila)


MSCs batch 4 induced and GO:0008544: 9 genes, expected 1.78776, P=8.03361e-05, P adjusted = 1
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
596 BCL2 B-cell CLL/lymphoma 2
1382 CRABP2 cellular retinoic acid binding protein 2
2261 FGFR3 fibroblast growth factor receptor 3
5493 PPL periplakin
28514 DLL1 delta-like 1 (Drosophila)
1277 COL1A1 collagen, type I, alpha 1


MSCs batch 4 induced and GO:0032268: 13 genes, expected 3.63938, P=8.16538e-05, P adjusted = 1
6387 CXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
894 CCND2 cyclin D2
652 BMP4 bone morphogenetic protein 4
10643 IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3
11076 TPPP tubulin polymerization promoting protein
8651 SOCS1 suppressor of cytokine signaling 1
348 APOE apolipoprotein E
3589 IL11 interleukin 11
5577 PRKAR2B protein kinase, cAMP-dependent, regulatory, type II, beta
6840 SVIL supervillin
2261 FGFR3 fibroblast growth factor receptor 3
340719 NANOS1 nanos homolog 1 (Drosophila)
9021 SOCS3 suppressor of cytokine signaling 3


MSCs batch 4 induced and GO:0048730: 6 genes, expected 0.727876, P=8.60499e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2304 FOXE1 forkhead box E1 (thyroid transcription factor 2)
596 BCL2 B-cell CLL/lymphoma 2
2261 FGFR3 fibroblast growth factor receptor 3
5493 PPL periplakin
28514 DLL1 delta-like 1 (Drosophila)


MSCs batch 4 induced and GO:0001656: 5 genes, expected 0.459711, P=8.909e-05, P adjusted = 1
9241 NOG noggin
652 BMP4 bone morphogenetic protein 4
5076 PAX2 paired box 2
5979 RET ret proto-oncogene
3911 LAMA5 laminin, alpha 5


MSCs batch 4 induced and GO:0048812: 9 genes, expected 1.83884, P=9.97893e-05, P adjusted = 1
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
7852 CXCR4 chemokine (C-X-C motif) receptor 4
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
10417 SPON2 spondin 2, extracellular matrix protein
5076 PAX2 paired box 2
3800 KIF5C kinesin family member 5C
3730 KAL1 Kallmann syndrome 1 sequence


MSCs batch 4 induced and GO:0048667: 9 genes, expected 1.83884, P=9.97893e-05, P adjusted = 1
1949 EFNB3 ephrin-B3
4804 NGFR nerve growth factor receptor (TNFR superfamily, member 16)
7852 CXCR4 chemokine (C-X-C motif) receptor 4
22854 NTNG1 netrin G1
348 APOE apolipoprotein E
10417 SPON2 spondin 2, extracellular matrix protein
5076 PAX2 paired box 2
3800 KIF5C kinesin family member 5C
3730 KAL1 Kallmann syndrome 1 sequence



MSC rank products repressed and GO:0005578: 5 genes, expected 0.456147, P=8.34973e-05, P adjusted = 1
1842 ECM2 extracellular matrix protein 2, female organ and adipocyte specific
1301 COL11A1 collagen, type XI, alpha 1
1303 COL12A1 collagen, type XII, alpha 1
4982 TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
8076 MFAP5 microfibrillar associated protein 5


MSC rank products induced and GO:0005576: 23 genes, expected 7.85508, P=1.95291e-06, P adjusted = 0.227342
8788 DLK1 delta-like 1 homolog (Drosophila)
650 BMP2 bone morphogenetic protein 2
55118 CRTAC1 cartilage acidic protein 1
28514 DLL1 delta-like 1 (Drosophila)
55959 SULF2 sulfatase 2
256691 MAMDC2 MAM domain containing 2
11009 IL24 interleukin 24
9244 CRLF1 cytokine receptor-like factor 1
4885 NPTX2 neuronal pentraxin II
9388 LIPG lipase, endothelial
2487 FRZB frizzled-related protein
3589 IL11 interleukin 11
3383 ICAM1 intercellular adhesion molecule 1
1191 CLU clusterin
1299 COL9A3 collagen, type IX, alpha 3
10417 SPON2 spondin 2, extracellular matrix protein
7292 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
157869 RPESP RPE-spondin
3977 LIFR leukemia inhibitory factor receptor alpha
7093 TLL2 tolloid-like 2
5228 PGF placental growth factor
50964 SOST sclerosteosis


MSC rank products induced and GO:0005887: 18 genes, expected 5.1031, P=2.51755e-06, P adjusted = 0.293073
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
2261 FGFR3 fibroblast growth factor receptor 3
358 AQP1 aquaporin 1 (Colton blood group)
9289 GPR56 G protein-coupled receptor 56
28514 DLL1 delta-like 1 (Drosophila)
3680 ITGA9 integrin, alpha 9
9143 SYNGR3 synaptogyrin 3
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
1903 S1PR3 sphingosine-1-phosphate receptor 3
6326 SCN2A sodium channel, voltage-gated, type II, alpha subunit
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
3383 ICAM1 intercellular adhesion molecule 1
3759 KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2
7292 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
3977 LIFR leukemia inhibitory factor receptor alpha
9120 SLC16A6 solute carrier family 16, member 6 (monocarboxylic acid transporter 7)
7805 LAPTM5 lysosomal multispanning membrane protein 5
7852 CXCR4 chemokine (C-X-C motif) receptor 4


MSC rank products induced and GO:0031226: 18 genes, expected 5.16616, P=2.9922e-06, P adjusted = 0.348328
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
2261 FGFR3 fibroblast growth factor receptor 3
358 AQP1 aquaporin 1 (Colton blood group)
9289 GPR56 G protein-coupled receptor 56
28514 DLL1 delta-like 1 (Drosophila)
3680 ITGA9 integrin, alpha 9
9143 SYNGR3 synaptogyrin 3
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
1903 S1PR3 sphingosine-1-phosphate receptor 3
6326 SCN2A sodium channel, voltage-gated, type II, alpha subunit
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
3383 ICAM1 intercellular adhesion molecule 1
3759 KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2
7292 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
3977 LIFR leukemia inhibitory factor receptor alpha
9120 SLC16A6 solute carrier family 16, member 6 (monocarboxylic acid transporter 7)
7805 LAPTM5 lysosomal multispanning membrane protein 5
7852 CXCR4 chemokine (C-X-C motif) receptor 4


MSC rank products induced and GO:0007399: 14 genes, expected 3.26544, P=4.28586e-06, P adjusted = 0.498925
2824 GPM6B glycoprotein M6B
9118 INA internexin neuronal intermediate filament protein, alpha
3280 HES1 hairy and enhancer of split 1, (Drosophila)
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
2261 FGFR3 fibroblast growth factor receptor 3
650 BMP2 bone morphogenetic protein 2
30812 SOX8 SRY (sex determining region Y)-box 8
10763 NES nestin
26508 HEYL hairy/enhancer-of-split related with YRPW motif-like
3897 L1CAM L1 cell adhesion molecule
10417 SPON2 spondin 2, extracellular matrix protein
9355 LHX2 LIM homeobox 2
51176 LEF1 lymphoid enhancer-binding factor 1
7852 CXCR4 chemokine (C-X-C motif) receptor 4


MSC rank products induced and GO:0048731: 22 genes, expected 7.72896, P=5.47141e-06, P adjusted = 0.636937
1382 CRABP2 cellular retinoic acid binding protein 2
2824 GPM6B glycoprotein M6B
9118 INA internexin neuronal intermediate filament protein, alpha
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
2261 FGFR3 fibroblast growth factor receptor 3
650 BMP2 bone morphogenetic protein 2
28514 DLL1 delta-like 1 (Drosophila)
30812 SOX8 SRY (sex determining region Y)-box 8
10763 NES nestin
26508 HEYL hairy/enhancer-of-split related with YRPW motif-like
2487 FRZB frizzled-related protein
3589 IL11 interleukin 11
3897 L1CAM L1 cell adhesion molecule
10417 SPON2 spondin 2, extracellular matrix protein
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
9355 LHX2 LIM homeobox 2
5228 PGF placental growth factor
51176 LEF1 lymphoid enhancer-binding factor 1
50964 SOST sclerosteosis
7852 CXCR4 chemokine (C-X-C motif) receptor 4


MSC rank products induced and GO:0048869: 18 genes, expected 5.78321, P=1.41663e-05, P adjusted = 1
2824 GPM6B glycoprotein M6B
9118 INA internexin neuronal intermediate filament protein, alpha
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
360 AQP3 aquaporin 3 (Gill blood group)
2261 FGFR3 fibroblast growth factor receptor 3
650 BMP2 bone morphogenetic protein 2
28514 DLL1 delta-like 1 (Drosophila)
30812 SOX8 SRY (sex determining region Y)-box 8
2487 FRZB frizzled-related protein
3589 IL11 interleukin 11
3897 L1CAM L1 cell adhesion molecule
10417 SPON2 spondin 2, extracellular matrix protein
7093 TLL2 tolloid-like 2
5228 PGF placental growth factor
58480 RHOU ras homolog gene family, member U
51176 LEF1 lymphoid enhancer-binding factor 1
7852 CXCR4 chemokine (C-X-C motif) receptor 4


MSC rank products induced and GO:0030154: 17 genes, expected 5.26975, P=1.61311e-05, P adjusted = 1
2824 GPM6B glycoprotein M6B
9118 INA internexin neuronal intermediate filament protein, alpha
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
360 AQP3 aquaporin 3 (Gill blood group)
2261 FGFR3 fibroblast growth factor receptor 3
650 BMP2 bone morphogenetic protein 2
28514 DLL1 delta-like 1 (Drosophila)
30812 SOX8 SRY (sex determining region Y)-box 8
2487 FRZB frizzled-related protein
3589 IL11 interleukin 11
3897 L1CAM L1 cell adhesion molecule
10417 SPON2 spondin 2, extracellular matrix protein
7093 TLL2 tolloid-like 2
5228 PGF placental growth factor
51176 LEF1 lymphoid enhancer-binding factor 1
7852 CXCR4 chemokine (C-X-C motif) receptor 4


MSC rank products induced and GO:0009888: 9 genes, expected 1.47283, P=1.66994e-05, P adjusted = 1
1382 CRABP2 cellular retinoic acid binding protein 2
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
2261 FGFR3 fibroblast growth factor receptor 3
650 BMP2 bone morphogenetic protein 2
28514 DLL1 delta-like 1 (Drosophila)
9355 LHX2 LIM homeobox 2
51176 LEF1 lymphoid enhancer-binding factor 1
50964 SOST sclerosteosis


MSC rank products induced and GO:0045608: 2 genes, expected 0.00900812, P=2.00646e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
28514 DLL1 delta-like 1 (Drosophila)


MSC rank products induced and GO:0045632: 2 genes, expected 0.00900812, P=2.00646e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
28514 DLL1 delta-like 1 (Drosophila)


MSC rank products induced and GO:0007417: 8 genes, expected 1.16655, P=2.22183e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
650 BMP2 bone morphogenetic protein 2
30812 SOX8 SRY (sex determining region Y)-box 8
10763 NES nestin
9355 LHX2 LIM homeobox 2
51176 LEF1 lymphoid enhancer-binding factor 1
7852 CXCR4 chemokine (C-X-C motif) receptor 4


MSC rank products induced and GO:0044459: 21 genes, expected 7.8776, P=2.54135e-05, P adjusted = 1
3785 KCNQ2 potassium voltage-gated channel, KQT-like subfamily, member 2
360 AQP3 aquaporin 3 (Gill blood group)
2261 FGFR3 fibroblast growth factor receptor 3
358 AQP1 aquaporin 1 (Colton blood group)
9289 GPR56 G protein-coupled receptor 56
28514 DLL1 delta-like 1 (Drosophila)
3680 ITGA9 integrin, alpha 9
9143 SYNGR3 synaptogyrin 3
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
1903 S1PR3 sphingosine-1-phosphate receptor 3
6326 SCN2A sodium channel, voltage-gated, type II, alpha subunit
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
3383 ICAM1 intercellular adhesion molecule 1
3759 KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2
7292 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
2706 GJB2 gap junction protein, beta 2, 26kDa
3977 LIFR leukemia inhibitory factor receptor alpha
9120 SLC16A6 solute carrier family 16, member 6 (monocarboxylic acid transporter 7)
58480 RHOU ras homolog gene family, member U
7805 LAPTM5 lysosomal multispanning membrane protein 5
7852 CXCR4 chemokine (C-X-C motif) receptor 4


MSC rank products induced and GO:0007166: 18 genes, expected 6.41378, P=5.58187e-05, P adjusted = 1
1028 CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
2261 FGFR3 fibroblast growth factor receptor 3
650 BMP2 bone morphogenetic protein 2
9289 GPR56 G protein-coupled receptor 56
28514 DLL1 delta-like 1 (Drosophila)
3680 ITGA9 integrin, alpha 9
2150 F2RL1 coagulation factor II (thrombin) receptor-like 1
1903 S1PR3 sphingosine-1-phosphate receptor 3
9568 GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2
26508 HEYL hairy/enhancer-of-split related with YRPW motif-like
2487 FRZB frizzled-related protein
3481 IGF2 insulin-like growth factor 2 (somatomedin A)
27065 D4S234E DNA segment on chromosome 4 (unique) 234 expressed sequence
3977 LIFR leukemia inhibitory factor receptor alpha
51176 LEF1 lymphoid enhancer-binding factor 1
50964 SOST sclerosteosis
7852 CXCR4 chemokine (C-X-C motif) receptor 4
51655 RASD1 RAS, dexamethasone-induced 1


MSC rank products induced and GO:0045631: 2 genes, expected 0.0135122, P=6.0017e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
28514 DLL1 delta-like 1 (Drosophila)


MSC rank products induced and GO:0045607: 2 genes, expected 0.0135122, P=6.0017e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
28514 DLL1 delta-like 1 (Drosophila)


MSC rank products induced and GO:0060113: 3 genes, expected 0.0810731, P=6.86791e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
28514 DLL1 delta-like 1 (Drosophila)


MSC rank products induced and GO:0042490: 3 genes, expected 0.0900812, P=9.53246e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
2261 FGFR3 fibroblast growth factor receptor 3
28514 DLL1 delta-like 1 (Drosophila)


MSC rank products induced and GO:0048518: 16 genes, expected 5.48144, P=9.77428e-05, P adjusted = 1
3280 HES1 hairy and enhancer of split 1, (Drosophila)
84525 HOPX HOP homeobox
1028 CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)
360 AQP3 aquaporin 3 (Gill blood group)
2261 FGFR3 fibroblast growth factor receptor 3
650 BMP2 bone morphogenetic protein 2
11076 TPPP tubulin polymerization promoting protein
30812 SOX8 SRY (sex determining region Y)-box 8
1903 S1PR3 sphingosine-1-phosphate receptor 3
894 CCND2 cyclin D2
3589 IL11 interleukin 11
1191 CLU clusterin
7292 TNFSF4 tumor necrosis factor (ligand) superfamily, member 4
3977 LIFR leukemia inhibitory factor receptor alpha
5228 PGF placental growth factor
51176 LEF1 lymphoid enhancer-binding factor 1