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Research Article

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins

  • Zabrina L. Brumme equal contributor mail,

    equal contributor Contributed equally to this work with: Zabrina L. Brumme, Mina John

    zbrumme@partners.org

    Affiliations: Ragon Institute of MGH, MIT and Harvard, Charlestown, Massachusetts, United States of America, Simon Fraser University, Burnaby, British Columbia, Canada

    X
  • Mina John equal contributor,

    equal contributor Contributed equally to this work with: Zabrina L. Brumme, Mina John

    Affiliation: Center for Clinical Immunology and Biomedical Statistics, Royal Perth Hospital, Murdoch University, Perth, Australia

    X
  • Jonathan M. Carlson,

    Affiliation: Microsoft Research, Redmond, Washington, United States of America

    X
  • Chanson J. Brumme,

    Affiliation: Ragon Institute of MGH, MIT and Harvard, Charlestown, Massachusetts, United States of America

    X
  • Dennison Chan,

    Affiliation: BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada

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  • Mark A. Brockman,

    Affiliations: Ragon Institute of MGH, MIT and Harvard, Charlestown, Massachusetts, United States of America, Simon Fraser University, Burnaby, British Columbia, Canada

    X
  • Luke C. Swenson,

    Affiliation: BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada

    X
  • Iris Tao,

    Affiliation: BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada

    X
  • Sharon Szeto,

    Affiliation: BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada

    X
  • Pamela Rosato,

    Affiliation: Ragon Institute of MGH, MIT and Harvard, Charlestown, Massachusetts, United States of America

    X
  • Jennifer Sela,

    Affiliation: Ragon Institute of MGH, MIT and Harvard, Charlestown, Massachusetts, United States of America

    X
  • Carl M. Kadie,

    Affiliation: Microsoft Research, Redmond, Washington, United States of America

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  • Nicole Frahm,

    Affiliation: Ragon Institute of MGH, MIT and Harvard, Charlestown, Massachusetts, United States of America

    Current address: Fred Hutchinson Cancer Research Center and University of Washington, Seattle, Washington, United States of America

    X
  • Christian Brander,

    Affiliations: Ragon Institute of MGH, MIT and Harvard, Charlestown, Massachusetts, United States of America, AIDS Research Institute irsiCaixa - HIVACAT, Hospital Germans Trias i Pujol, Badalona, Spain, Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain

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  • David W. Haas,

    Affiliation: Vanderbilt University School of Medicine, Nashville, Tennessee, United States of America

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  • Sharon A. Riddler,

    Affiliation: University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

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  • Richard Haubrich,

    Affiliation: University of California San Diego, San Diego, California, United States of America

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  • Bruce D. Walker,

    Affiliations: Ragon Institute of MGH, MIT and Harvard, Charlestown, Massachusetts, United States of America, Howard Hughes Medical Institute, Chevy Chase, Maryland, United States of America

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  • P. Richard Harrigan,

    Affiliations: BC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada, University of British Columbia, Vancouver, British Columbia, Canada

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  • David Heckerman,

    Affiliation: Microsoft Research, Redmond, Washington, United States of America

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  • Simon Mallal

    Affiliation: Center for Clinical Immunology and Biomedical Statistics, Royal Perth Hospital, Murdoch University, Perth, Australia

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  • Published: August 19, 2009
  • DOI: 10.1371/journal.pone.0006687

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