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Research Article

SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins

  • Richard J. Edwards mail,

    To whom correspondence should be addressed. E-mail: r.edwards@soton.ac.uk

    Affiliations: University College Dublin Complex and Adaptive Systems Laboratory, University College Dublin Conway Institute of Biomolecular and Biomedical Sciences, University College Dublin, Dublin, Ireland, School of Biological Sciences, University of Southampton, Southampton, United Kingdom

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  • Norman E. Davey,

    Affiliation: University College Dublin Complex and Adaptive Systems Laboratory, University College Dublin Conway Institute of Biomolecular and Biomedical Sciences, University College Dublin, Dublin, Ireland

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  • Denis C. Shields

    Affiliation: University College Dublin Complex and Adaptive Systems Laboratory, University College Dublin Conway Institute of Biomolecular and Biomedical Sciences, University College Dublin, Dublin, Ireland

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  • Published: October 03, 2007
  • DOI: 10.1371/journal.pone.0000967

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