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Research Article

Development of HuMiChip for Functional Profiling of Human Microbiomes

  • Qichao Tu,

    Affiliation: Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America

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  • Zhili He mail,

    jzhou@ou.edu (JZ); zhili.he@ou.edu (ZH)

    Affiliation: Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America

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  • Yan Li,

    Affiliation: State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China

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  • Yanfei Chen,

    Affiliation: State Key Laboratory for Diagnosis and Treatment of Infectious Disease, The First Affiliated Hospital, Zhejiang University, Hangzhou, China

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  • Ye Deng,

    Affiliation: Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America

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  • Lu Lin,

    Affiliation: Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology, Qingdao, Shandong, China

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  • Christopher L. Hemme,

    Affiliation: Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America

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  • Tong Yuan,

    Affiliation: Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America

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  • Joy D. Van Nostrand,

    Affiliation: Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America

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  • Liyou Wu,

    Affiliation: Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America

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  • Xuedong Zhou,

    Affiliation: State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China

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  • Wenyuan Shi,

    Affiliation: UCLA School of Dentistry, University of California Los Angeles, Los Angeles, California, United States of America

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  • Lanjuan Li,

    Affiliation: State Key Laboratory for Diagnosis and Treatment of Infectious Disease, The First Affiliated Hospital, Zhejiang University, Hangzhou, China

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  • Jian Xu,

    Affiliation: Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology, Qingdao, Shandong, China

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  • Jizhong Zhou mail

    jzhou@ou.edu (JZ); zhili.he@ou.edu (ZH)

    Affiliations: Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America, Earth Science Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China

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  • Published: March 04, 2014
  • DOI: 10.1371/journal.pone.0090546

About the Authors

Qichao Tu, Zhili He, Ye Deng, Christopher L. Hemme, Tong Yuan, Joy D. Van Nostrand, Liyou Wu, Jizhong Zhou
Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, United States of America
Yan Li, Xuedong Zhou
State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China
Yanfei Chen, Lanjuan Li
State Key Laboratory for Diagnosis and Treatment of Infectious Disease, The First Affiliated Hospital, Zhejiang University, Hangzhou, China
Lu Lin, Jian Xu
Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology, Qingdao, Shandong, China
Wenyuan Shi
UCLA School of Dentistry, University of California Los Angeles, Los Angeles, California, United States of America
Jizhong Zhou
Earth Science Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
Jizhong Zhou
State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China

Corresponding Authors

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: QT ZH YL YC YD L. Lin CH JV XZ WS L. Li JX JZ. Performed the experiments: YL YC YT. Analyzed the data: QT ZH YL YC TY. Contributed reagents/materials/analysis tools: JV LW XZ L. Li JZ. Wrote the paper: QT ZH JV JZ.