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Research Article

STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

  • Konrad J. Karczewski mail,

    konradjkarczewski@gmail.com (KJK); joel.dudley@mssm.edu (JTD)

    Affiliations: Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, California, United States of America, Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America

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  • Guy Haskin Fernald,

    Affiliations: Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, California, United States of America, Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America

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  • Alicia R. Martin,

    Affiliations: Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, California, United States of America, Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America

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  • Michael Snyder,

    Affiliation: Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America

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  • Nicholas P. Tatonetti,

    Affiliation: Department of Biomedical Informatics, Columbia University, New York, New York, United States of America

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  • Joel T. Dudley mail

    konradjkarczewski@gmail.com (KJK); joel.dudley@mssm.edu (JTD)

    Affiliation: Department of Genetics and Genomic Sciences, Mount Sinai School of Medicine, New York, New York, United States of America

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  • Published: January 15, 2014
  • DOI: 10.1371/journal.pone.0084860

About the Authors

Konrad J. Karczewski, Guy Haskin Fernald, Alicia R. Martin
Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, California, United States of America
Konrad J. Karczewski, Guy Haskin Fernald, Alicia R. Martin, Michael Snyder
Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America
Nicholas P. Tatonetti
Department of Biomedical Informatics, Columbia University, New York, New York, United States of America
Joel T. Dudley
Department of Genetics and Genomic Sciences, Mount Sinai School of Medicine, New York, New York, United States of America

Corresponding Authors

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: KJK GHF ARM NPT JTD. Performed the experiments: KJK GHF ARM JTD. Contributed reagents/materials/analysis tools: KJK GHF ARM MS NPT JTD. Wrote the paper: KJK JTD.