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Research Article

DNA-COMPACT: DNA COMpression Based on a Pattern-Aware Contextual Modeling Technique

  • Pinghao Li mail,

    pinghaoli1989@gmail.com

    Affiliations: Division of Biomedical Informatics, University of California San Diego, La Jolla, California, United States of America, Department of Electronic Engineering, Shanghai Jiao Tong University, Shanghai, China

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  • Shuang Wang,

    Affiliation: Division of Biomedical Informatics, University of California San Diego, La Jolla, California, United States of America

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  • Jihoon Kim,

    Affiliation: Division of Biomedical Informatics, University of California San Diego, La Jolla, California, United States of America

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  • Hongkai Xiong,

    Affiliation: Department of Electronic Engineering, Shanghai Jiao Tong University, Shanghai, China

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  • Lucila Ohno-Machado,

    Affiliation: Division of Biomedical Informatics, University of California San Diego, La Jolla, California, United States of America

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  • Xiaoqian Jiang

    Affiliation: Division of Biomedical Informatics, University of California San Diego, La Jolla, California, United States of America

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  • Published: November 25, 2013
  • DOI: 10.1371/journal.pone.0080377

About the Authors

Pinghao Li, Shuang Wang, Jihoon Kim, Lucila Ohno-Machado, Xiaoqian Jiang
Division of Biomedical Informatics, University of California San Diego, La Jolla, California, United States of America
Pinghao Li, Hongkai Xiong
Department of Electronic Engineering, Shanghai Jiao Tong University, Shanghai, China

Corresponding Author

Email: pinghaoli1989@gmail.com

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: PHL HKX XQJ. Performed the experiments: PHL. Analyzed the data: PHL SW XQJ. Contributed reagents/materials/analysis tools: SW JK LOM. Wrote the paper: PHL SW JK HKX LOM XQJ. Designed the software: PHL SW XQJ.