IMSA: Integrated Metagenomic Sequence Analysis for Identification of Exogenous Reads in a Host Genomic Background

Michelle T. Dimon; Henry M. Wood; Pamela H. Rabbitts; Sarah T. Arron

doi:10.1371/journal.pone.0064546

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Open Access

Peer-reviewed

Research Article

IMSA: Integrated Metagenomic Sequence Analysis for Identification of Exogenous Reads in a Host Genomic Background

Michelle T. Dimon,

Affiliation Department of Dermatology, University of California San Francisco, San Francisco, California, United States of America
⨯
Henry M. Wood,

Affiliation Leeds Institute of Molecular Medicine, St James’s University Hospital, Leeds, United Kingdom
⨯
Pamela H. Rabbitts,

Affiliation Leeds Institute of Molecular Medicine, St James’s University Hospital, Leeds, United Kingdom
⨯
Sarah T. Arron

* E-mail: arrons@derm.ucsf.edu

Affiliation Department of Dermatology, University of California San Francisco, San Francisco, California, United States of America
⨯

IMSA: Integrated Metagenomic Sequence Analysis for Identification of Exogenous Reads in a Host Genomic Background

Michelle T. Dimon,
Henry M. Wood,
Pamela H. Rabbitts,
Sarah T. Arron

Published: May 23, 2013
https://doi.org/10.1371/journal.pone.0064546

About the Authors

Michelle T. Dimon

Affiliation Department of Dermatology, University of California San Francisco, San Francisco, California, United States of America

Henry M. Wood

Affiliation Leeds Institute of Molecular Medicine, St James’s University Hospital, Leeds, United Kingdom

Pamela H. Rabbitts

Affiliation Leeds Institute of Molecular Medicine, St James’s University Hospital, Leeds, United Kingdom

Sarah T. Arron

* E-mail: arrons@derm.ucsf.edu

Affiliation Department of Dermatology, University of California San Francisco, San Francisco, California, United States of America

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: MTD STA. Performed the experiments: MTD. Analyzed the data: MTD STA. Contributed reagents/materials/analysis tools: MTD HMW PHR STA. Wrote the paper: MTD STA.

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Sequence alignment
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Metagenomics
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Taxonomy
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HPV-16
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Multiple alignment calculation
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Human genomics
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Genomic databases
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Sequence analysis
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