About the Authors

Alex R. Hastie

Affiliation BioNano Genomics, San Diego, California, United States of America

Lingli Dong

Affiliations Genomics and Gene Discovery Research Unit, United States Department of Agriculture - Agricultural Research Service, Albany, California, United States of America, Department of Plant Sciences, University of California Davis, Davis, California, United States of America

Alexis Smith

Affiliation BioNano Genomics, San Diego, California, United States of America

Jeff Finklestein

Affiliation BioNano Genomics, San Diego, California, United States of America

Ernest T. Lam

Affiliation BioNano Genomics, San Diego, California, United States of America

Naxin Huo

Affiliations Genomics and Gene Discovery Research Unit, United States Department of Agriculture - Agricultural Research Service, Albany, California, United States of America, Department of Plant Sciences, University of California Davis, Davis, California, United States of America

Han Cao

Affiliation BioNano Genomics, San Diego, California, United States of America

Pui-Yan Kwok

Affiliation Institute for Human Genetics, University of California San Francisco, San Francisco, California, United States of America

Karin R. Deal

Affiliation Department of Plant Sciences, University of California Davis, Davis, California, United States of America

Jan Dvorak

Affiliation Department of Plant Sciences, University of California Davis, Davis, California, United States of America

Ming-Cheng Luo

Affiliation Department of Plant Sciences, University of California Davis, Davis, California, United States of America

Yong Gu

ming.xiao@drexel.edu (MX); yong.gu@ars.usda.gov (YG)

Affiliations Genomics and Gene Discovery Research Unit, United States Department of Agriculture - Agricultural Research Service, Albany, California, United States of America, Department of Plant Sciences, University of California Davis, Davis, California, United States of America

Ming Xiao

ming.xiao@drexel.edu (MX); yong.gu@ars.usda.gov (YG)

Current address: Drexel University, Philadelphia, Pennsylvania, United States of America

Affiliation BioNano Genomics, San Diego, California, United States of America

Competing Interests

The authors have the following interests. Alex R Hastie, Alexis Smith, Jeff Finklestein, Ernest Lam, Han Cao and Ming Xiao were employees of BioNano Genomics at the time of the study, and they own company stock options. Alex R Hastie, Han Cao, and Ming Xiao are inventors of several patents owned by BioNano Genomics. The authors have a patent application with inventors Ming Xiao and Alex R Hastie (application number 13/606,819) relating to this work, “PHYSICAL MAP CONSTRUCTION OF WHOLE GENOME AND POOLED CLONE MAPPING IN NANOCHANNEL ARRAY. The technology platform (BioNano Genomics IrysTM) described in this paper was developed by BioNano Genomics. There are no further patents, products in development or marketed products to declare. This does not alter the authors' adherence to all the PLOS ONE policies on sharing data and materials, as detailed online in the guide for authors.

Author Contributions

Conceived and designed the experiments: AH HC MCL YG MX. Performed the experiments: AH LD AS JF NH KRD. Analyzed the data: AH LD JD MCL YG MX. Contributed reagents/materials/analysis tools: ETL PYK. Wrote the paper: AH LD ETL KRD JD HC MCL YG MX.