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Research Article

AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses

  • Jiantao Shi,

    Affiliations: Key Laboratory of Stem Cell Biology, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China, Graduate School of the Chinese Academy of Sciences, Shanghai, China

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  • Wentao Yang,

    Affiliation: Shanghai Institute of Hematology and Sino-French Center for Life Science and Genomics, Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China

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  • Mingjie Chen,

    Affiliation: Shanghai Institute of Hematology and Sino-French Center for Life Science and Genomics, Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China

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  • Yanzhi Du,

    Affiliation: Key Laboratory of Stem Cell Biology, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China

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  • Ji Zhang mail,

    jizhang@sibs.ac.cn

    Affiliations: Key Laboratory of Stem Cell Biology, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China, Shanghai Institute of Hematology and Sino-French Center for Life Science and Genomics, Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China

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  • Kankan Wang

    Affiliation: Shanghai Institute of Hematology and Sino-French Center for Life Science and Genomics, Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China

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  • Published: September 12, 2011
  • DOI: 10.1371/journal.pone.0024576

About the Authors

Jiantao Shi, Yanzhi Du, Ji Zhang
Key Laboratory of Stem Cell Biology, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
Wentao Yang, Mingjie Chen, Ji Zhang, Kankan Wang
Shanghai Institute of Hematology and Sino-French Center for Life Science and Genomics, Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
Jiantao Shi
Graduate School of the Chinese Academy of Sciences, Shanghai, China

Corresponding Author

Email: jizhang@sibs.ac.cn

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: JZ KW JS. Performed the experiments: MC YD. Analyzed the data: JS WY. Wrote the paper: JZ KW JS.