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Research Article

sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

  • Jayavel Sridhar,

    Affiliations: Centre of Excellence in Bioinformatics, School of Biotechnology, Madurai Kamaraj University, Madurai, Tamilnadu, India, Department of Infection, Immunity and Inflammation, University of Leicester, Leicester, United Kingdom

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  • Suryanarayanan Ramkumar Narmada,

    Affiliation: Bioinformatics Centre, Indian Institute of Science, Bangalore, Karnataka, India

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  • Radhakrishnan Sabarinathan,

    Affiliation: Bioinformatics Centre, Indian Institute of Science, Bangalore, Karnataka, India

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  • Hong-Yu Ou,

    Affiliation: Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiaotong University, Shanghai, People's Republic of China

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  • Zixin Deng,

    Affiliation: Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiaotong University, Shanghai, People's Republic of China

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  • Kanagaraj Sekar,

    Affiliation: Bioinformatics Centre, Indian Institute of Science, Bangalore, Karnataka, India

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  • Ziauddin Ahamed Rafi †,

    † Deceased.

    Affiliation: Centre of Excellence in Bioinformatics, School of Biotechnology, Madurai Kamaraj University, Madurai, Tamilnadu, India

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  • Kumar Rajakumar mail

    kr46@le.ac.uk

    Affiliations: Department of Infection, Immunity and Inflammation, University of Leicester, Leicester, United Kingdom, Department of Clinical Microbiology, University Hospitals of Leicester NHS Trust, Leicester, United Kingdom

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  • Published: August 05, 2010
  • DOI: 10.1371/journal.pone.0011970

About the Authors

Jayavel Sridhar, Ziauddin Ahamed Rafi
Centre of Excellence in Bioinformatics, School of Biotechnology, Madurai Kamaraj University, Madurai, Tamilnadu, India
Suryanarayanan Ramkumar Narmada, Radhakrishnan Sabarinathan, Kanagaraj Sekar
Bioinformatics Centre, Indian Institute of Science, Bangalore, Karnataka, India
Jayavel Sridhar, Kumar Rajakumar
Department of Infection, Immunity and Inflammation, University of Leicester, Leicester, United Kingdom
Kumar Rajakumar
Department of Clinical Microbiology, University Hospitals of Leicester NHS Trust, Leicester, United Kingdom
Hong-Yu Ou, Zixin Deng
Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiaotong University, Shanghai, People's Republic of China

Corresponding Author

Email: kr46@le.ac.uk

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: JS KR. Performed the experiments: JS ZAR. Analyzed the data: JS SRN RS HYO ZD KS ZAR KR. Contributed reagents/materials/analysis tools: KS ZAR KR. Wrote the paper: JS KR.