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Research Article

Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies

  • Andreas Sundquist mail,

    To whom correspondence should be addressed. E-mail: asundqui@cs.stanford.edu

    Affiliation: Department of Computer Science, Stanford University, Stanford, California, United States of America

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  • Mostafa Ronaghi,

    Affiliation: Stanford Genome Technology Center, Stanford, California, United States of America

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  • Haixu Tang,

    Affiliation: School of Informatics, Indiana University, Bloomington, Indiana, United States of America

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  • Pavel Pevzner,

    Affiliation: Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California, United States of America

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  • Serafim Batzoglou

    Affiliation: Department of Computer Science, Stanford University, Stanford, California, United States of America

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  • Published: May 30, 2007
  • DOI: 10.1371/journal.pone.0000484

About the Authors

Andreas Sundquist, Serafim Batzoglou
Department of Computer Science, Stanford University, Stanford, California, United States of America
Mostafa Ronaghi
Stanford Genome Technology Center, Stanford, California, United States of America
Haixu Tang
School of Informatics, Indiana University, Bloomington, Indiana, United States of America
Pavel Pevzner
Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California, United States of America

Corresponding Author

Email: asundqui@cs.stanford.edu

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: SB MR AS. Performed the experiments: AS. Analyzed the data: AS. Contributed reagents/materials/analysis tools: PP HT. Wrote the paper: PP SB AS.