Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment

• Jason Li ,

  Contributed equally to this work with: Jason Li, Maria A. Doyle

  * E-mail: Jason.Li@petermac.org

  Affiliations Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Department of Mechanical Engineering, The University of Melbourne, Parkville, VIC, Australia

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• Maria A. Doyle ,

  Contributed equally to this work with: Jason Li, Maria A. Doyle

  Affiliation Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Isaam Saeed,

  Affiliations Department of Mechanical Engineering, The University of Melbourne, Parkville, VIC, Australia, YourGene Biosciences Australia, Southbank, VIC, Australia

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• Stephen Q. Wong,

  Affiliation Molecular Pathology Research and Development Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Victoria Mar,

  Affiliations Victorian Melanoma Service, Alfred Hospital, Prahran, VIC, Australia, Department of Epidemiology and Preventive Medicine, Monash University, Clayton, VIC, Australia, Molecular Oncology Laboratory, Oncogenic Signaling and Growth Control Program, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• David L. Goode,

  Affiliations Sarcoma Genetics and Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia, Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Franco Caramia,

  Affiliation Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Ken Doig,

  Affiliation Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Georgina L. Ryland,

  Affiliation Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Ella R. Thompson,

  Affiliation Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Sally M. Hunter,

  Affiliation Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Saman K. Halgamuge,

  Affiliation Department of Mechanical Engineering, The University of Melbourne, Parkville, VIC, Australia

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• Jason Ellul,

  Affiliation Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Alexander Dobrovic,

  Affiliations Molecular Pathology Research and Development Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Translational Genomics & Epigenomics Laboratory, Ludwig Institute for Cancer Research, Heidelberg, VIC, Australia

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• Ian G. Campbell,

  Affiliations Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia

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• Anthony T. Papenfuss,

  Affiliations Bioinformatics division, The Walter and Eliza Hall Institute for Medical Research, Parkville, VIC, Australia, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia, Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

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• Grant A. McArthur,

  Affiliations Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia, Molecular Oncology Laboratory, Oncogenic Signaling and Growth Control Program, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Translational Research Laboratory, Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Department of Medicine, St. Vincent’s Hospital, Fitzroy, VIC, Australia, Department of Pathology, University of Melbourne, Parkville, VIC, Australia

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•  [ ... ],
• Richard W. Tothill

  Affiliations Translational Research Laboratory, Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Department of Pathology, University of Melbourne, Parkville, VIC, Australia

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