Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding Phage stx2

• Sanaa A. Ahmed,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Joy Awosika,

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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• Carson Baldwin,

  Affiliation United States Army Research Institute for Infectious Disease, Frederick, Maryland, United States of America

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• Kimberly A. Bishop-Lilly,

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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• Biswajit Biswas,

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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• Stacey Broomall,

  Affiliation United States Army Edgewood Chemical Biological Center, Aberdeen Proving Ground, Maryland, United States of America

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• Patrick S. G. Chain,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Olga Chertkov,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Otar Chokoshvili,

  Current address: Infectious Diseases, AIDS and Clinical Immunology Research Center, Tbilisi, Republic of Georgia

  Affiliation South Caucasus Field Epidemiology and Laboratory Training Program, National Center for Disease Control and Public Health, Tbilisi, Republic of Georgia

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• Susan Coyne,

  Affiliation United States Army Research Institute for Infectious Disease, Frederick, Maryland, United States of America

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• Karen Davenport,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• J. Chris Detter,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• William Dorman,

  Affiliation United States Army Research Institute for Infectious Disease, Frederick, Maryland, United States of America

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• Tracy H. Erkkila,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Jason P. Folster,

  Affiliation Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America

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• Kenneth G. Frey,

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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• Matroner George,

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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• Cheryl Gleasner,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Matthew Henry,

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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• Karen K. Hill,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Kyle Hubbard,

  Current address: United States Army Medical Research Institute for Chemical Defense, Aberdeen Proving Ground, Maryland, United States of America

  Affiliations United States Army Edgewood Chemical Biological Center, Aberdeen Proving Ground, Maryland, United States of America, Excet Inc, Springfield, Virginia, United States of America

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• Joseph Insalaco,

  Affiliations United States Army Edgewood Chemical Biological Center, Aberdeen Proving Ground, Maryland, United States of America, Science Applications International Corporation, Abingdon, Maryland, United States of America

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• Shannon Johnson,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Aaron Kitzmiller,

  Affiliation BioTeam, Inc., Middleton, Massachusetts, United States of America

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• Michael Krepps,

  Affiliations United States Army Edgewood Chemical Biological Center, Aberdeen Proving Ground, Maryland, United States of America, Excet Inc, Springfield, Virginia, United States of America

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• Chien-Chi Lo,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Truong Luu,

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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• Lauren A. McNew,

  Current address: Program Executive Office, C3T, Cryptographic Systems, Aberdeen Proving Ground, Maryland, United States of America

  Affiliation United States Army Edgewood Chemical Biological Center, Aberdeen Proving Ground, Maryland, United States of America

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• Timothy Minogue,

  Affiliation United States Army Research Institute for Infectious Disease, Frederick, Maryland, United States of America

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• Christine A. Munk,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Brian Osborne,

  Affiliation BioTeam, Inc., Middleton, Massachusetts, United States of America

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• Mohit Patel,

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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• Krista G. Reitenga,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• C. Nicole Rosenzweig,

  Affiliation United States Army Edgewood Chemical Biological Center, Aberdeen Proving Ground, Maryland, United States of America

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• April Shea,

  Affiliations United States Army Research Institute for Infectious Disease, Frederick, Maryland, United States of America, Team Ke’aki Tech, Frederick, Maryland, United States of America

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• Xiaohong Shen,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Nancy Strockbine,

  Affiliation Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America

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• Cheryl Tarr,

  Affiliation Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America

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• Hazuki Teshima,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Eric van Gieson,

  Affiliation Defense Threat Reduction Agency, Alexandria, Virginia, United States of America

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• Kathleen Verratti,

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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• Mark Wolcott,

  Affiliation United States Army Research Institute for Infectious Disease, Frederick, Maryland, United States of America

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• Gary Xie,

  Affiliation Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Shanmuga Sozhamannan ,

  Contributed equally to this work with: Shanmuga Sozhamannan, Henry S. Gibbons

  Affiliation Naval Medical Research Center and Henry M. Jackson Foundation for Military Medicine, Frederick, Maryland, United States of America

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•  [ ... ],
• Henry S. Gibbons, for the Threat Characterization Consortium

  Contributed equally to this work with: Shanmuga Sozhamannan, Henry S. Gibbons

  * E-mail: henry.s.gibbons.civ@mail.mil

  Affiliation United States Army Edgewood Chemical Biological Center, Aberdeen Proving Ground, Maryland, United States of America

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