About the Authors

Jason Li

Contributed equally to this work with: Jason Li, Maria A. Doyle

Jason.Li@petermac.org

Affiliations Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Department of Mechanical Engineering, The University of Melbourne, Parkville, VIC, Australia

Maria A. Doyle

Contributed equally to this work with: Jason Li, Maria A. Doyle

Affiliation Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Isaam Saeed

Affiliations Department of Mechanical Engineering, The University of Melbourne, Parkville, VIC, Australia, YourGene Biosciences Australia, Southbank, VIC, Australia

Stephen Q. Wong

Affiliation Molecular Pathology Research and Development Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Victoria Mar

Affiliations Victorian Melanoma Service, Alfred Hospital, Prahran, VIC, Australia, Department of Epidemiology and Preventive Medicine, Monash University, Clayton, VIC, Australia, Molecular Oncology Laboratory, Oncogenic Signaling and Growth Control Program, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

David L. Goode

Affiliations Sarcoma Genetics and Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia, Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Franco Caramia

Affiliation Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Ken Doig

Affiliation Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Georgina L. Ryland

Affiliation Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Ella R. Thompson

Affiliation Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Sally M. Hunter

Affiliation Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Saman K. Halgamuge

Affiliation Department of Mechanical Engineering, The University of Melbourne, Parkville, VIC, Australia

Jason Ellul

Affiliation Bioinformatics, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Alexander Dobrovic

Affiliations Molecular Pathology Research and Development Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Translational Genomics & Epigenomics Laboratory, Ludwig Institute for Cancer Research, Heidelberg, VIC, Australia

Ian G. Campbell

Affiliations Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia

Anthony T. Papenfuss

Affiliations Bioinformatics division, The Walter and Eliza Hall Institute for Medical Research, Parkville, VIC, Australia, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia, Bioinformatics and Cancer Genomics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia

Grant A. McArthur

Affiliations Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, Australia, Molecular Oncology Laboratory, Oncogenic Signaling and Growth Control Program, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Translational Research Laboratory, Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Department of Medicine, St. Vincent’s Hospital, Fitzroy, VIC, Australia, Department of Pathology, University of Melbourne, Parkville, VIC, Australia

Richard W. Tothill

Affiliations Translational Research Laboratory, Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia, Department of Pathology, University of Melbourne, Parkville, VIC, Australia

Competing Interests

YourGene Biosciences Australia has provided support on cloud technology, Virtual Machine development, and drafting of manuscript (through author Isaam Saeed). This does not alter our adherence to PLOS ONE policies on sharing data and materials.

Author Contributions

Conceived and designed the experiments: JL MD RT. Performed the experiments: JL MD JE FC DG KD IS SKH. Analyzed the data: JL MD. Contributed reagents/materials/analysis tools: SW VM GR ET SMH IC RT AD AP GM. Wrote the paper: JL IS AP MD RT.