About the Authors

Nicolai Juul Birkbak

Affiliations Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark

Bose Kochupurakkal

Affiliation Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America

Jose M. G. Izarzugaza

Affiliation Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark

Aron C. Eklund

Affiliation Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark

Yang Li

Affiliation Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America

Joyce Liu

Affiliation Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America

Zoltan Szallasi

Affiliations Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark, Children's Hospital Informatics Program at the Harvard-Massachusetts Institutes of Technology Division of Health Sciences and Technology (CHIP@HST), Harvard Medical School, Boston, Massachusetts, United States of America

Ursula A. Matulonis

Affiliation Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America

Andrea L. Richardson

Affiliation Department of Pathology, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America

J. Dirk Iglehart

zhigang_wang@dfci.harvard.edu (ZCW); JIGLEHART@PARTNERS.ORG (JDI)

Affiliations Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, Department of Surgery, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America

Zhigang C. Wang

zhigang_wang@dfci.harvard.edu (ZCW); JIGLEHART@PARTNERS.ORG (JDI)

Affiliations Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America, Department of Surgery, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: ZCW NJB JDI ALR ZS. Performed the experiments: NJB BK. Analyzed the data: NJB ZCW BK ACE YL. Contributed reagents/materials/analysis tools: NJB JMI. Wrote the manuscript: JDI ZCW NJB ALR. Provided clinical expertise in analysis of treatment response and clinical outcome: UM JL.