BCL::Score—Knowledge Based Energy Potentials for Ranking Protein Models Represented by Idealized Secondary Structure Elements

Nils Woetzel; Mert Karakaş; Rene Staritzbichler; Ralf Müller; Brian E. Weiner; Jens Meiler

doi:10.1371/journal.pone.0049242

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Open Access

Peer-reviewed

Research Article

BCL::Score—Knowledge Based Energy Potentials for Ranking Protein Models Represented by Idealized Secondary Structure Elements

Nils Woetzel,

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America
⨯
Mert Karakaş,

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America
⨯
Rene Staritzbichler,

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America
⨯
Ralf Müller,

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America
⨯
Brian E. Weiner,

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America
⨯
Jens Meiler

* E-mail: * E-mail: jens.meiler@vanderbilt.edu

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America
⨯

BCL::Score—Knowledge Based Energy Potentials for Ranking Protein Models Represented by Idealized Secondary Structure Elements

Nils Woetzel,
Mert Karakaş,
Rene Staritzbichler,
Ralf Müller,
Brian E. Weiner,
Jens Meiler

Published: November 16, 2012
https://doi.org/10.1371/journal.pone.0049242

About the Authors

Nils Woetzel

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America

Mert Karakaş

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America

Rene Staritzbichler

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America

Ralf Müller

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America

Brian E. Weiner

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America

Jens Meiler

* E-mail: * E-mail: jens.meiler@vanderbilt.edu

Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: NW MK RS JM. Performed the experiments: NW. Analyzed the data: NW MK JM. Contributed reagents/materials/analysis tools: NW MK RM RS. Wrote the paper: NW MK BW JM.

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Protein structure
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Protein structure prediction
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Protein folding
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Protein structure determination
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Protein structure databases
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Potential energy
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Protein sequencing
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Free energy
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