About the Authors
- Stéphane Vuilleumier
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Contributed equally to this work with: Stéphane Vuilleumier, Ludmila Chistoserdova
* E-mail: vuilleumier@unistra.fr (SV); milachis@u.washington.edu (LC)
Affiliation Département Micro-organismes, Génomes, Environnement, Université de Strasbourg, UMR7156 CNRS, Strasbourg, France
- Ludmila Chistoserdova
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Contributed equally to this work with: Stéphane Vuilleumier, Ludmila Chistoserdova
* E-mail: vuilleumier@unistra.fr (SV); milachis@u.washington.edu (LC)
Affiliation Department of Chemical Engineering, University of Washington, Seattle, Washington, United States of America
- Ming-Chun Lee
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Affiliation Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America
- Françoise Bringel
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Affiliation Département Micro-organismes, Génomes, Environnement, Université de Strasbourg, UMR7156 CNRS, Strasbourg, France
- Aurélie Lajus
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Affiliation Institut de Génomique, Laboratoire de Génomique Comparative, CEA and UMR8030 CNRS, Génoscope, Evry, France
- Yang Zhou
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Affiliation Genome Center, University of Washington, Seattle, Washington, United States of America
- Benjamin Gourion
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Affiliation Institute of Microbiology, ETH Zurich, Zurich, Switzerland
- Valérie Barbe
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Affiliation Institut de Génomique, CEA, Génoscope, Evry, France
- Jean Chang
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Affiliation Genome Center, University of Washington, Seattle, Washington, United States of America
- Stéphane Cruveiller
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Affiliation Institut de Génomique, Laboratoire de Génomique Comparative, CEA and UMR8030 CNRS, Génoscope, Evry, France
- Carole Dossat
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Affiliation Institut de Génomique, CEA, Génoscope, Evry, France
- Will Gillett
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Affiliation Genome Center, University of Washington, Seattle, Washington, United States of America
- Christelle Gruffaz
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Affiliation Département Micro-organismes, Génomes, Environnement, Université de Strasbourg, UMR7156 CNRS, Strasbourg, France
- Eric Haugen
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Affiliation Genome Center, University of Washington, Seattle, Washington, United States of America
- Edith Hourcade
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Affiliation Département Micro-organismes, Génomes, Environnement, Université de Strasbourg, UMR7156 CNRS, Strasbourg, France
- Ruth Levy
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Affiliation Genome Center, University of Washington, Seattle, Washington, United States of America
- Sophie Mangenot
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Affiliation Institut de Génomique, CEA, Génoscope, Evry, France
- Emilie Muller
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Affiliation Département Micro-organismes, Génomes, Environnement, Université de Strasbourg, UMR7156 CNRS, Strasbourg, France
- Thierry Nadalig
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Affiliation Département Micro-organismes, Génomes, Environnement, Université de Strasbourg, UMR7156 CNRS, Strasbourg, France
- Marco Pagni
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Affiliation Swiss Institute of Bioinformatics, Vital-IT group, Lausanne, Switzerland
- Christian Penny
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Affiliation Département Micro-organismes, Génomes, Environnement, Université de Strasbourg, UMR7156 CNRS, Strasbourg, France
- Rémi Peyraud
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Affiliation Institute of Microbiology, ETH Zurich, Zurich, Switzerland
- David G. Robinson
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Affiliation Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America
- David Roche
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Affiliation Institut de Génomique, Laboratoire de Génomique Comparative, CEA and UMR8030 CNRS, Génoscope, Evry, France
- Zoé Rouy
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Affiliation Institut de Génomique, Laboratoire de Génomique Comparative, CEA and UMR8030 CNRS, Génoscope, Evry, France
- Channakhone Saenampechek
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Affiliation Genome Center, University of Washington, Seattle, Washington, United States of America
- Grégory Salvignol
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Affiliation Institut de Génomique, Laboratoire de Génomique Comparative, CEA and UMR8030 CNRS, Génoscope, Evry, France
- David Vallenet
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Affiliation Institut de Génomique, Laboratoire de Génomique Comparative, CEA and UMR8030 CNRS, Génoscope, Evry, France
- Zaining Wu
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Affiliation Genome Center, University of Washington, Seattle, Washington, United States of America
- Christopher J. Marx
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Affiliation Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America
- Julia A. Vorholt
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Affiliation Institute of Microbiology, ETH Zurich, Zurich, Switzerland
- Maynard V. Olson
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Affiliations Genome Center, University of Washington, Seattle, Washington, United States of America, Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America, Department of Medicine, University of Washington, Seattle, Washington, United States of America
- Rajinder Kaul
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Affiliations Genome Center, University of Washington, Seattle, Washington, United States of America, Department of Medicine, University of Washington, Seattle, Washington, United States of America
- Jean Weissenbach
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Affiliation Institut de Génomique, Laboratoire de Génomique Comparative, CEA and UMR8030 CNRS, Génoscope, Evry, France
- Claudine Médigue
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Affiliation Institut de Génomique, Laboratoire de Génomique Comparative, CEA and UMR8030 CNRS, Génoscope, Evry, France
- Mary E. Lidstrom
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Affiliations Department of Chemical Engineering, University of Washington, Seattle, Washington, United States of America, Department of Microbiology, University of Washington, Seattle, Washington, United States of America
Competing Interests
The authors have declared that no competing interests exist.
Author Contributions
Analyzed the data: SV LC MCL FB AL YZ BG SC RP DR. Contributed reagents/materials/analysis tools: SC WG MP DGR DR GS DV. Wrote the paper: SV LC MCL FB BG MP RP CJM JAV CM. Designed the initial project: SV LC MVO JW MEL. Contributed to the manual expert annotation of the two strains: SV LC MCL FB BG CG EHourcade EM TN CP RP. Comparative genomic analyses: SV LC MCL FB RP DR. Designed Figure 1: SV LC RP JAV. Designed Figure 2: ZR. Designed Figure 3: GS. Designed Figure 4: SV LC. Designed Figure 5: MCL. Designed Figure 6: SV. Secured funds to support the study: SV JW CM MEL. Shotgun sequencing and assembly: YZ VB JC CD RL SM CS ZW RK. Managed informatics resources of the project: CD EHaugen MP GS DV.