Determining Physical Constraints in Transcriptional Initiation Complexes Using DNA Sequence Analysis

Ryan K. Shultzaberger; Derek Y. Chiang; Alan M. Moses; Michael B. Eisen

doi:10.1371/journal.pone.0001199

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Open Access

Peer-reviewed

Research Article

Determining Physical Constraints in Transcriptional Initiation Complexes Using DNA Sequence Analysis

Ryan K. Shultzaberger,

Affiliation Department of Molecular and Cell Biology, University of California, Berkeley, United States of America
⨯
Derek Y. Chiang,

Affiliation Department of Molecular and Cell Biology, University of California, Berkeley, United States of America
⨯
Alan M. Moses,

Affiliation Graduate Group in Biophysics, University of California, Berkeley, United States of America
⨯
Michael B. Eisen

*To whom correspondence should be addressed. E-mail: mbeisen@lbl.gov

Affiliations Department of Molecular and Cell Biology, University of California, Berkeley, United States of America, Department of Genome Sciences, Genomic Division, Ernest Orlando Lawrence Berkeley National Lab, Berkeley, California, United States of America
⨯

Determining Physical Constraints in Transcriptional Initiation Complexes Using DNA Sequence Analysis

Ryan K. Shultzaberger,
Derek Y. Chiang,
Alan M. Moses,
Michael B. Eisen

Published: November 21, 2007
https://doi.org/10.1371/journal.pone.0001199

About the Authors

Ryan K. Shultzaberger

Affiliation Department of Molecular and Cell Biology, University of California, Berkeley, United States of America

Derek Y. Chiang

Affiliation Department of Molecular and Cell Biology, University of California, Berkeley, United States of America

Alan M. Moses

Affiliation Graduate Group in Biophysics, University of California, Berkeley, United States of America

Michael B. Eisen

*To whom correspondence should be addressed. E-mail: mbeisen@lbl.gov

Affiliations Department of Molecular and Cell Biology, University of California, Berkeley, United States of America, Department of Genome Sciences, Genomic Division, Ernest Orlando Lawrence Berkeley National Lab, Berkeley, California, United States of America

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: DC AM RS. Performed the experiments: RS. Analyzed the data: DC RS. Contributed reagents/materials/analysis tools: RS. Wrote the paper: ME RS.

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Gene regulation
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Genomics
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Microarrays
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Gene expression
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Sulfur
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Transcription factors
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DNA-binding proteins
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DNA transcription
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