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The pattern of quinolone resistance in E. coli does not mirror that of chloroquine use in West Africa

Posted by iokeke on 28 Sep 2008 at 18:43 GMT

A question raised by NJWhite remains open. If the hypothesis can be extended beyond the study area then, “the epidemiological pattern of fluoroquinolone resistance in enteric bacteria (before the introduction of inexpensive fluoroquinolones) should have mirrored that of chloroquine use, with high levels in parts of Africa and Asia.” Available data are few but suggest that they do not. We screened for nalidixic acid resistance in fecal Escherichia coli isolates in south west Nigeria between 1986 and 1998 (Okeke, IN, Fayinka, ST and Lamikanra, A (2000) Antibiotic resistance trends in Escherichia coli from apparently healthy Nigerian students (1986-1998). Emerging Infectious Diseases. 6, 393-396). This is a part of the world where chloroquine was used intensively at that time and continues to exert heavy selection pressure. Our unpublished data reveal that in the formal health system, 97% of febrile patients received chloroquine in the 1980s. Moreover, chloroquine was used intensively in the 60s and 70s as part of, and following the first malaria eradication initiative. The authors are right in presupposing that very few investigators screened for quinolone resistance, however we needed to do so because we used nalidixic acid-resistant recipients in conjugation experiments. We found that nalidixic acid resistance was low/absent during between 1986 and 1998. Other studies involving fecal isolates recovered before 2000, performed by us and other workers, make similar findings (for example Okeke, et al. Journal of Infectious Diseases, 181, 252-260) More recently, we screened samples from the same location isolated in 2005 and find that resistance to nalidixic acid approaches 20% and ciprofloxacin resistance has emerged. Coincident with this emergence is the introduction and now widespread use of ciprofloxacin and perfloxacin. (Before 2000, quinolone antimicrobials were available but too expensive to be accessed by most of the population. They were rarely used outside secondary and tertiary care institutions, and even there only as second-line therapies).

Overall, these data do not support a role for chloroquine selection in the emergence of quinolone resistance in that region. Instead, they suggest that the recent introduction and indiscriminate of quinolone antibacterials as the primary source of selective pressure. We are currently studying the mechanisms of resistance in recent isolates from Nigeria and Ghana and will report our findings when these studies are completed. We however think the study was rigorously performed and find the data intriguing, raising important questions that should be addressed before the likely ‘bringing back’ of chloroquine as a front-runner antimalarial. Are there other factors that combine with chloroquine use to select for QREC in South America that were absent from West Africa in the 1980s? If so, what are they and what is the prognosis for selective pressure in other parts of the world? Is there a metabolite at play, that present in one population and not in the other?

RE: The pattern of quinolone resistance in E. coli does not mirror that of chloroquine use in West Africa

Michael_Silverman replied to iokeke on 05 Oct 2008 at 22:24 GMT

We appreciate the comments of Dr Okeke et al. regarding the experience from Nigeria.

Although the Journal of Infectious Diseases study of enteroaggregative E.coli did not demonstrate quinolone resistance, the larger study of Nigerian students did demonstrate nalidixic acid resistance within the range which we saw in malaria non-epidemic years in Guyana. We demonstrated resistance prevalences of 3.0% and 3.3% in non-epidemic years and Okeke et al. demonstrated rates of nalidixic acid resistance of 0-3.2% in various years, despite no local quinolone useage. In our experience, it was during the vivax epidemic period of 2002 when quinolone resistance rates rose to 10.2%. During this period there was a 1270% increase in the incidence of P.vivax, allowing us to identify more clearly the effect of chloroquine on quinolone resistance. As the prevalence fell back to baseline within 2 years after the epidemic, timing of testing is critical and may have led to differences between the findings in Guyana and Nigeria.
Drinking water quality may also differ between the two sites. Our finding of both chloroquine and quinolone resistant E.coli within the drinking water, suggest an ideal environment for both transmission of resistant strains, and ongoing antimicrobial pressure that can maintain them in the community.

RE: RE: The pattern of quinolone resistance in E. coli does not mirror that of chloroquine use in West Africa

iokeke replied to Michael_Silverman on 07 Mar 2012 at 23:01 GMT

I write to mention that we have since elucidated resistance mechanisms in commensal Escherichia coli isolates described in our 2008 post. We find that prior to introduction of antibacterial fluoroquinolones, when quinolone resistance was seen in bacteria, it was low level and due to efflux. Upon the introduction of fluoroquinolone selection pressure, we began to recover isolates with mutations in the quinolone-resistance determining regions of genes encoding E. coli quinolone targets GyrA and ParC, including specific mutations seen by Davidson et al in the 2008 Guyana study, as well as plasmid-encoded quinolone resistance genes. We did track antimicrobial and antibacterial use over the three decades that we have monitored resistance and find that chloroquine was used intensively through out but appearance of quinolone-specific resistant mechanisms coincided with introduction of ciprofloxacin. Our study is of long duration but is small and was performed in a Nigerian University town. While we don’t have the benefit of ‘before and after’ data from elsewhere, we note that we see similar resistance trends and mechanisms in isolates obtained from Ghana’s capital city Accra. We have published the data from Nigeria (1 http://www.biomedcentral.... ), as well as the data I refer to from Ghana (2 http://www.biomedcentral.... ). Both papers are Open Access.

Overall, the pattern of chloroquine use is not reflective of E. coli fluoroquinlone resistance patterns in the settings in which we work. In those settings, commensal E. coli resistance patterns do reflect resistance profiles in pathogens and therefore it is important to understand risk factors underlying evolution to resistance. Our group feels that the other possible selection sites proposed by the Davidson et al group and N.J. White should be explored, in particular by researchers working in malaria-endemic middle-income countries. If chloroquine (or some chloroquine derivative) in the water supply or sewage disposal systems could have enhanced the impact of what should be weak selective pressure, they will have fundamental consequences for West Africa as infrastructure develops and antimicrobials continue to be threatened by resistance. A better understanding of how to mitigate this type of selection could be valuable for African health care systems in the years to come.

Iruka Okeke

Literature cited
1: Lamikanra A, et al.Rapid evolution of fluoroquinolone-resistant Escherichia coli in Nigeria is temporally associated with fluoroquinolone use. BMC Infect Dis. 2011;11:312. http://www.biomedcentral....


2: Namboodiri SS, et al. Quinolone resistance in Escherichia coli from Accra, Ghana. BMC Microbiol. 2011;11:44. http://www.biomedcentral....

No competing interests declared.