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Research Article

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

  • Marcus J. Claesson mail,

    mclaesson@bioinfo.ucc.ie

    Affiliations: Department of Microbiology, University College Cork, Cork, Ireland, Alimentary Pharmabiotic Centre, University College Cork, Cork, Ireland

    X
  • Orla O'Sullivan,

    Affiliation: Teagasc, Moorepark Food Research Centre, Moorepark, Fermoy, Co. Cork, Ireland

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  • Qiong Wang,

    Affiliation: Center for Microbial Ecology and Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, United States of America

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  • Janne Nikkil√§,

    Affiliation: Department of Basic Veterinary Medicine, Division of Microbiology and Epidemiology, University of Helsinki, Helsinki, Finland

    X
  • Julian R. Marchesi,

    Affiliations: Department of Microbiology, University College Cork, Cork, Ireland, Alimentary Pharmabiotic Centre, University College Cork, Cork, Ireland

    Current address: Cardiff School of Biosciences, Cardiff, United Kingdom

    X
  • Hauke Smidt,

    Affiliation: Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands

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  • Willem M. de Vos,

    Affiliations: Department of Basic Veterinary Medicine, Division of Microbiology and Epidemiology, University of Helsinki, Helsinki, Finland, Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands

    X
  • R. Paul Ross,

    Affiliations: Alimentary Pharmabiotic Centre, University College Cork, Cork, Ireland, Teagasc, Moorepark Food Research Centre, Moorepark, Fermoy, Co. Cork, Ireland

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  • Paul W. O'Toole

    Affiliations: Department of Microbiology, University College Cork, Cork, Ireland, Alimentary Pharmabiotic Centre, University College Cork, Cork, Ireland

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  • Published: August 20, 2009
  • DOI: 10.1371/journal.pone.0006669

Reader Comments (1)

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Sequencing reads

Posted by shirleyogan on 02 Oct 2013 at 11:10 GMT

Very interesting paper. Would it be possible to upload the sequencing reads to SRA or some other servers? Thank you

No competing interests declared.

RE: Sequencing reads

MarcusClaesson replied to shirleyogan on 04 Oct 2013 at 14:55 GMT

Thanks. Please find the trimmed reads here
http://eldermet.ucc.ie/te...
Unfortunately these do not include B-V4-0.5, C-V4-0.1 or D-V4-0.1 as I couldn't recover them at this time.

No competing interests declared.