AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses

Open Access

Peer-reviewed

Research Article

Jiantao Shi,

Affiliations Key Laboratory of Stem Cell Biology, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China, Graduate School of the Chinese Academy of Sciences, Shanghai, China
⨯
Wentao Yang,

Affiliation Shanghai Institute of Hematology and Sino-French Center for Life Science and Genomics, Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
⨯
Mingjie Chen,

Affiliation Shanghai Institute of Hematology and Sino-French Center for Life Science and Genomics, Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
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Yanzhi Du,

Affiliation Key Laboratory of Stem Cell Biology, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
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Ji Zhang ,

* E-mail: jizhang@sibs.ac.cn

Affiliations Key Laboratory of Stem Cell Biology, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China, Shanghai Institute of Hematology and Sino-French Center for Life Science and Genomics, Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
⨯
Kankan Wang

Affiliation Shanghai Institute of Hematology and Sino-French Center for Life Science and Genomics, Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
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Motif
http://plosone.org/article/info:doi/10.1371/journal.pone.0024576#article1.front1.article-meta1.abstract1.p1

KK Wang, the last author of the manuscript, is an additional corresponding author. KK Wang's email address is: kankanwang@shsmu.edu.cn

No competing interests declared.

Sequence motif analysis
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Yeast
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Algorithms
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Sequence alignment
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Software tools
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Transcription factors
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