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Adsorptive and other losses

Posted by crlee on 06 May 2013 at 15:33 GMT

Interference by leachates from plastic components, which has been mentioned occasionally in the past, has recently been indentified as a cause of difficulty with several receptor systems. This may perhaps have distracted attention from a very common problem that has been known to analysts for 50 years or more: at low concentrations, the measured concentration of a compound tends to decrease more rapidly than the dilution. Examples I recall from the 1960s and early 1970s concerned the determination of steroids, and pharmacokinetic studies.

Frequently there is a fairly sharp threshold below which a compound just practically disappears. When this happens to a receptor ligand, one would obtain the expected sigmoid response, but the apparent IC50 would be a function of the loss threshold and not of the affinity of the receptor for the ligand.

"Saturable" losses might be due to traces of reactive impurities in solvents. Often, they are attributed to retention on the surface of glass or plastic pipettes, containers or stoppers. Losses could be adsorptive or by ion exchange. When I was running a GC/MS laboratory 2-3 decades ago, we would try a method out before taking the decision to silanise the glassware, a time consuming procedure. Sometimes, a suitable amount of a stable isotopically-labelled internal standard or an unlabelled close analogue was sufficient.

In liquid chromatography attention is paid to the materiels used for the septa of glass sample vials. Some workers simply avoid letting the sample solution coming into contact with the septum.

Saturable loss is usually easy to detect in the analytical field, because most kinds of calibration curve ought normally to pass through the origin.

In my experience, receptor pharmacologists would rarely ask for analytical support in order to verify the concentrations of in vitro media. Analytical method development used to be quite long and difficult. In any case, good practice is to repeat critical experiments on different days; this would likely catch serious problems over losses, which tend to be very variable. Nowadays, it could be argued that important data should be backed up by LC/MS determinations, for which "generic" rapid methods are available.

No competing interests declared.

RE: Adsorptive and other losses

jdolechno replied to crlee on 24 Jun 2013 at 21:42 GMT

@crlee. Thank you very much for the comments. I wanted to expand and comment on some of your statements.
You mentioned that steroids have been known to bind to surfaces. Many other people have also made similar statements and we do not doubt them. However, a number of people have extended the line of reasoning and stated that the problem is due completely (or most significantly) to hydrophobic binding of the analyte to surfaces. They then further suggest that since these very hydrophobic compounds fail to comply with Lipinski’s Rule of 5s we should not consider them anyway. As we showed in the article, correlation between logP and the ratio of IC50 values was low. The compound that appeared to be depleted from solution the most out of all we have seen has a logP of 2.87. While we agree that very hydrophobic compounds may become depleted during serial dilutions, this effect is seen with other compounds as well.
Silanization may well be a solution in some cases, but it should also increase hydrophobic binding. However, silanizing all the microplates and wettable surfaces would be extremely time-consuming and costly.
We agree that when one is looking at a single compound (or very small group) it is important, even essential, to develop calibration curves. However, in the case of high-throughput screening that is an impossible situation. Developing a million calibration curves would be far more difficult that switching to techniques that do not exhibit the problem. Finally, mass spectroscopy, while the gold standard for assays when a limited number of compounds are involved becomes impossible from a practical sense when one needs to screen millions of compounds. Even at 1 second per sample (considerably faster than any technology available today) it would take more than 4 months (running 24/7) to determine the concentration of analyte in each well of a 1 million compound screen (assuming 12-point curves). And this would not include the time to develop the original calibration curves. We do not know of any generic rapid methods that would overcome the concerns we outlined in the article.

Competing interests declared: I am a co-author on the paper and am employed by Labcyte.