Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

Raquel S. Linheiro; Casey M. Bergman

doi:10.1371/journal.pone.0030008

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Open Access

Peer-reviewed

Research Article

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

Raquel S. Linheiro,

Affiliation Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom
⨯
Casey M. Bergman

* E-mail: casey.bergman@manchester.ac.uk

Affiliation Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom
⨯

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

Raquel S. Linheiro,
Casey M. Bergman

Published: February 9, 2012
https://doi.org/10.1371/journal.pone.0030008

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Code to detect non-reference TE insertions

Posted by caseybergman on 21 Feb 2013 at 11:12 GMT

We have released an implementation of the approach described in this paper to detect non-reference (aka de novo) TE insertions using next-generation sequencing data here: https://github.com/bergma...

No competing interests declared.

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Invertebrate genomics
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Drosophila melanogaster
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Transposable elements
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Retrotransposons
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Mutagenesis
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Sequence motif analysis
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Insertion mutation
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Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

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Code to detect non-reference TE insertions

Posted by caseybergman on 21 Feb 2013 at 11:12 GMT