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Research Article

Framing the Salmonidae Family Phylogenetic Portrait: A More Complete Picture from Increased Taxon Sampling

  • Alexis Crête-Lafrenière,

    Affiliation: Institut de Biologie Intégrative et des Systèmes, Pavillon Charles-Eugène-Marchand, Université Laval, Québec, Québec, Canada

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  • Laura K. Weir mail,

    lweir@zoology.ubc.ca

    Affiliations: Institut de Biologie Intégrative et des Systèmes, Pavillon Charles-Eugène-Marchand, Université Laval, Québec, Québec, Canada, Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada

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  • Louis Bernatchez

    Affiliation: Institut de Biologie Intégrative et des Systèmes, Pavillon Charles-Eugène-Marchand, Université Laval, Québec, Québec, Canada

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  • Published: October 05, 2012
  • DOI: 10.1371/journal.pone.0046662

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Chronogram (fig 6) tree file

Posted by acretelaf on 12 Oct 2012 at 15:38 GMT

((((((Thymalus_arcticus_99:10.000922,Thymalus_arcticus_100:10.000922):1.525199,(Thymalus_brevirostris_103:6.029409,Thymalus_baicalensis_101:6.029409):5.496712):3.057733,(Thymalus_thymalus_107:5.288958,Thymalus_thymalus_106:5.288958):9.294896):3.533333,Thymalus_thymalus_104:18.117188):2.426394,Thymalus_thymalus_105:20.543581):38.595123,(((((((((((Coregonus_albula_6:0.307866,Coregonus_albula_5:0.307866):0.492201,Coregonus_peled_25:0.800067):0.589331,Coregonus_sardinella_28:1.389398):0.166991,Coregonus_sardinella_29:1.556389):6.819306,(((((Coregonus_clupeaformis_12:2.545315,Coregonus_clupeaformis_11:2.545315):1.466540,((Coregonus_pidschian_26:0.512649,Coregonus_muksun_21:0.512649):0.775212,Coregonus_lavaretus_19:1.287861):2.723993):0.303539,Coregonus_migratorius_20:4.315394):0.385484,Coregonus_ussuriensis_31:4.700878):0.168828,(Coregonus_nasus_23:0.568320,Coregonus_nasus_22:0.568320):4.301387):3.505989):1.058207,Coregonus_tugun_30:9.433902):1.699338,(((Coregonus_hoyi_14:0.460179,Coregonus_artedi_8:0.460179):1.243633,Coregonus_autumnalis_10:1.703812):2.105496,(Coregonus_laurettae_18:1.450826,Coregonus_laurettae_17:1.450826):2.358482):7.323933):1.693182,Stenodus_leucichthys_98:12.826422):1.551174,Coregonus_huntsmani_15:14.377596):25.666662,(((((Prosopium_spilonotus_66:0.590696,Prosopium_abyssicola_58:0.590696):0.110761,Prosopium_gemmifer_63:0.701457):4.138604,Prosopium_williamsoni_68:4.840061):8.733292,(Prosopium_cylindraceum_62:0.791167,Prosopium_cylindraceum_61:0.791167):12.782187):17.997988,(Prosopium_coulterii_60:1.592232,Prosopium_coulterii_59:1.592232):29.979110):8.472916):9.955742,((((Brachymystax_lenok_2:0.434018,Brachymystax_lenok_1:0.434018):8.373684,(Brachymystax_savinovi_4:0.768479,Brachymystax_savinovi_3:0.768479):8.039223):11.069262,((Hucho_taimen_34:4.036199,Hucho_taimen_35:4.036199):3.926953,Hucho_hucho_33:7.963152):11.913812):14.576212,((((Salmo_ohridanus_73:3.046972,Salmo_obtusirostris_71:3.046972):1.985429,(Salmo_platycephalus_74:3.152555,Salmo_trutta_77:3.152555):1.879846):6.873842,(Salmo_salar_76:1.212719,Salmo_salar_75:1.212719):10.693524):16.162800,(((((((Oncorhynchus_gilae_40:0.521807,Oncorhynchus_apache_36:0.521807):0.663891,(Oncorhynchus_mykiss_51:0.459113,Oncorhynchus_chrysogaster_37:0.459113):0.726585):0.077239,Oncorhynchus_mykiss_50:1.262936):9.707575,(Oncorhynchus_clarkii_39:2.214537,Oncorhynchus_clarkii_38:2.214537):8.755975)LACUSTRIS:4.680267,(((((Oncorhynchus_gorbuscha_42:0.398120,Oncorhynchus_gorbuscha_41:0.398120):6.065447,Oncorhynchus_keta_43:6.463567):4.819348,(Oncorhynchus_nerka_53:0.810988,Oncorhynchus_nerka_52:0.810988):10.471927)KEPTOSIS:3.194756,((Oncorhynchus_masou_48:0.349536,Oncorhynchus_masou_47:0.349536):0.427847,Oncorhynchus_rhodurus_54:0.777383):13.700288)RASTROTUS:0.523092,((Oncorhynchus_kisutch_46:0.507205,Oncorhynchus_kisutch_45:0.507205):9.014882,(Oncorhynchus_tshawytscha_56:0.817365,Oncorhynchus_tshawytscha_55:0.817365):8.704722):5.478675):0.650016):9.446099,((((((Salvelinus_malma_94:0.261009,Salvelinus_albus_81:0.261009):2.399045,(Salvelinus_alpinus_84:1.063169,Salvelinus_alpinus_82:1.063169):1.596884):1.952732,((Salvelinus_elgyticus_88:0.756760,Salvelinus_boganidae_85:0.756760):1.081889,(Salvelinus_confluentus_87:0.991342,Salvelinus_confluentus_86:0.991342):0.847306):2.774137):2.565695,Salvethymus_svetovidovi_97:7.178481):1.263343,((Salvelinus_fontinalis_90:0.566425,Salvelinus_fontinalis_89:0.566425):6.509016,(Salvelinus_namaycush_96:1.036098,Salvelinus_namaycush_95:1.036098):6.039343):1.366382):1.485215,(Salvelinus_leucomaenis_91:0.571836,Salvelinus_leucomaenis_92:0.571836):9.355203):15.169839)PALEOLOX:1.732990,Parahucho_perryi_57:26.829868):1.239174):6.384132):15.546825)EOSALMO:9.138704)ROOT;

No competing interests declared.